Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016679

Physical Location & Seq

Genomic Coordinates Forward (+)

22205553 .. 22210362

Gene Structure 4810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGACAACAGTAATGGCAATGAGGAAGTTCCCTCAGCTCCTTCAACTCCAGTAACACCAGGCACTCCTGGTGCTCCTCTCTTTGGTGGGTTCAAGCCAGATCACAGATCAAGTGGGATTGGTAGGAAATCACTTCTCAAGAGCTGCAGCAAGTGCTTTACTGTTGATGATTGGGCTTTGGAAGAAGGAGCATTGCCTAAAGCTTTTTGTGCACTACCACCCCCTCCTGTCTCACTTGCAAGAAAGGTGGGAGCTGAATTCCTAGGCACTTTCATACTGATATTTGCTGGGACAGCAACAGCTATTGTGAACCAAAAGACAGAAGGCACGGAAAGCCTTGTAGGCCTTGCAGCCTCTACCGGACTCGCTGTTATGGTTGTGATTTTATCGACAGGTCACATCTCTGGAGCTCATCTGAACCCTGCTGTCACCATTGCCTTTGCTGCACTCAAGCATTTCTCATGGAAACTAGTACCGGTGTACATTGGAGCACAAGTGTTGGCATCTATGTGTTCTGCGTTTGCCTTGAAGGTGATATTTCACCCCATAATGGGGGGTGGAGTTACAGTTCCTTCAGGAAGTTATGGTCAGGCTTTTGCTTTGGAGTTCATCATCAGCTTCAACCTCATGTTTGTGGTCACTGCTGTTGCCACCGACACTAGAGCTGTTGGGGAATTGGCGGGAATCGCGGTCGGAGCAACTGTAATGCTTAACATACTCATTGCTGGGGAGACAACAGGAGCTTCGATGAACCCCGTGAGAACACTAGGACCAGCCATAGCTGCAAACAACTTCAAAGCCATATGGGTCTACCTCACTGCACCAGTTCTTGGGGCACTATGCGGGGCAGGAACCTACACAGCAGTCAAGCTGCCAGAGGAAGAAGGTGAAAAGCCTTTGACAAGGAGCTTCAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0007154 GO:0008150 GO:0008509 GO:0008643 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015144 GO:0015166 GO:0015168 GO:0015204 GO:0015238 GO:0015318 GO:0015698 GO:0015791 GO:0015793 GO:0015840 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034219 GO:0034220 GO:0035445 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071496 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080029 GO:0098656 GO:0098660 GO:0098661 GO:1901618

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

307

Amino Acids

31.59

Weight (kDa)

8.26

Isoelectric Point (pI)

25.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	78 - 286	4.3e-51	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80760
fragaria_vesca	FvH4_6g28790
malus_domestica	MD17G1221800.v1.1
prunus_persica	Prupe.3G096600_v2.0.a1
pyrus_communis	pycom17g22580
rosa_chinensis	RchiOBHm_Chr2g0133211
rosa_laevigata	RLG00000019321
rosa_multiflora	Rmu_sc0000886.1_g000005
rosa_roxburghii	Rroxscaffold_2G00111300
rosa_rugosa	Rorug02G0310800
rosa_samantha	Rh2BG368900 Rh2CG346500 Rh2DG385900
rosa_wichuraiana	Rw2G029520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	830
AccI	GTMKAC	1 cut(s)	810
AccII	CGCG	1 cut(s)	689
AciI	CCGC	3 cut(s)	680, 689, 843
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	2 cut(s)	558, 895
AfaI	GTAC	2 cut(s)	474, 482
AfiI	CCNNNNNNNGG	5 cut(s)	83, 550, 551, 552, 830
AgeI	ACCGGT	1 cut(s)	475
AgsI	TTSAA	5 cut(s)	45, 94, 529, 622, 796
AhlI	ACTAGT	1 cut(s)	469
AjnI	CCWGG	2 cut(s)	58, 67
AloI	GAACNNNNNNTCC	2 cut(s)	552, 584
Alw21I	GWGCWC	4 cut(s)	76, 214, 412, 493
Alw26I	GTCTC	2 cut(s)	235, 725
Alw44I	GTGCAC	1 cut(s)	210
AoxI	GGCC	1 cut(s)	343
ApaLI	GTGCAC	1 cut(s)	210
ApeKI	GCWGC	6 cut(s)	144, 147, 350, 443, 782, 871
ApoI	RAATTY	1 cut(s)	257
AsiGI	ACCGGT	1 cut(s)	475
AspA2I	CCTAGG	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	770
AsuHPI	GGTGA	4 cut(s)	421, 533, 544, 899
AvaII	GGWCC	1 cut(s)	770
AvrII	CCTAGG	1 cut(s)	262
BaeGI	GKGCMC	2 cut(s)	214, 838
BanII	GRGCYC	1 cut(s)	412
Bbv12I	GWGCWC	4 cut(s)	76, 214, 412, 493
BbvCI	CCTCAGC	1 cut(s)	34
BbvI	GCAGC	6 cut(s)	131, 159, 362, 430, 769, 858
BciT130I	CCWGG	2 cut(s)	60, 69
BcoDI	GTCTC	2 cut(s)	235, 725
BcuI	ACTAGT	1 cut(s)	469
BfaI	CTAG	4 cut(s)	263, 470, 660, 767
BfmI	CTRYAG	1 cut(s)	145
BglI	GCCNNNNNGGC	1 cut(s)	342
BisI	GCNGC	6 cut(s)	145, 148, 351, 444, 783, 872
BlnI	CCTAGG	1 cut(s)	262
BlsI	GCNGC	6 cut(s)	146, 149, 352, 445, 784, 873
Bme1390I	CCNGG	2 cut(s)	60, 69
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	770
BmiI	GGNNCC	1 cut(s)	853
BmrFI	CCNGG	2 cut(s)	60, 69
BmsI	GCATC	1 cut(s)	512
BpmI	CTGGAG	2 cut(s)	33, 426
Bpu10I	CCTNAGC	1 cut(s)	34
BpuEI	CTTGAG	2 cut(s)	122, 434
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	2 cut(s)	359, 475
BsaXI	ACNNNNNCTCC	6 cut(s)	480, 510, 552, 582, 687, 717
Bsc4I	CCNNNNNNNGG	5 cut(s)	83, 550, 551, 552, 830
Bse118I	RCCGGY	1 cut(s)	475
Bse1I	ACTGG	2 cut(s)	50, 824
Bse3DI	GCAATG	4 cut(s)	25, 191, 432, 720
BseBI	CCWGG	2 cut(s)	60, 69
BseDI	CCNNGG	1 cut(s)	262
BseLI	CCNNNNNNNGG	5 cut(s)	83, 550, 551, 552, 830
BseMI	GCAATG	4 cut(s)	25, 191, 432, 720
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	50, 824
BseRI	GAGGAG	1 cut(s)	66
BseSI	GKGCMC	2 cut(s)	214, 838
BseXI	GCAGC	6 cut(s)	131, 159, 362, 430, 769, 858
BseYI	CCCAGC	2 cut(s)	287, 725
BsgI	GTGCAG	2 cut(s)	429, 804
Bsh1236I	CGCG	1 cut(s)	689
Bsh1285I	CGRYCG	1 cut(s)	693
BshFI	GGCC	1 cut(s)	345
BshTI	ACCGGT	1 cut(s)	475
BsiEI	CGRYCG	1 cut(s)	693
BsiHKAI	GWGCWC	4 cut(s)	76, 214, 412, 493
BsiSI	CCGG	2 cut(s)	360, 476
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	5 cut(s)	83, 550, 551, 552, 830
BsmAI	GTCTC	2 cut(s)	235, 725
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	345
Bsp1286I	GDGCHC	5 cut(s)	76, 214, 412, 493, 838
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	2 cut(s)	100, 107
BspACI	CCGC	3 cut(s)	680, 689, 843
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	689
BspLI	GGNNCC	1 cut(s)	853
BspMAI	CTGCAG	1 cut(s)	149
BsrDI	GCAATG	4 cut(s)	25, 191, 432, 720
BsrFI	RCCGGY	1 cut(s)	475
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	2 cut(s)	50, 824
BssAI	RCCGGY	1 cut(s)	475
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	2 cut(s)	100, 107
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	2 cut(s)	60, 69
Bst4CI	ACNGT	4 cut(s)	11, 163, 568, 703
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstAUI	TGTACA	1 cut(s)	480
BstDEI	CTNAG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	689
BstKTI	GATC	2 cut(s)	103, 110
BstMAI	GTCTC	2 cut(s)	235, 725
BstMBI	GATC	2 cut(s)	100, 107
BstMCI	CGRYCG	1 cut(s)	693
BstMWI	GCNNNNNNNGC	9 cut(s)	153, 209, 293, 333, 342, 443, 686, 695, 782
BstNI	CCWGG	2 cut(s)	60, 69
BstSCI	CCNGG	2 cut(s)	58, 67
BstSFI	CTRYAG	1 cut(s)	145
BstSLI	GKGCMC	2 cut(s)	214, 838
BstUI	CGCG	1 cut(s)	689
BstV1I	GCAGC	6 cut(s)	131, 159, 362, 430, 769, 858
BsuRI	GGCC	1 cut(s)	345
BtsI	GCAGTG	2 cut(s)	639, 816
BtsIMutI	CAGTG	2 cut(s)	639, 816
Cfr10I	RCCGGY	1 cut(s)	475
Cfr13I	GGNCC	1 cut(s)	770
Csp6I	GTAC	2 cut(s)	473, 481
CspAI	ACCGGT	1 cut(s)	475
CspCI	CAANNNNNGTGG	2 cut(s)	228, 263
CviAII	CATG	2 cut(s)	462, 628
CviQI	GTAC	2 cut(s)	473, 481
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	2 cut(s)	102, 109
DpnII	GATC	2 cut(s)	100, 107
Ecl136II	GAGCTC	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	262
Eco147I	AGGCCT	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	770
Eco53kI	GAGCTC	1 cut(s)	410
Eco57I	CTGAAG	2 cut(s)	558, 895
EcoICRI	GAGCTC	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	58, 67
EcoT14I	CCWWGG	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	2 cut(s)	465, 631
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	2 cut(s)	461, 627
FauI	CCCGC	2 cut(s)	673, 836
FauNDI	CATATG	1 cut(s)	803
FblI	GTMKAC	1 cut(s)	810
Fnu4HI	GCNGC	6 cut(s)	145, 148, 351, 444, 783, 872
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	6 cut(s)	145, 148, 351, 444, 783, 872
FspBI	CTAG	4 cut(s)	263, 470, 660, 767
GluI	GCNGC	6 cut(s)	145, 148, 351, 444, 783, 872
GsaI	CCCAGC	2 cut(s)	291, 729
GsuI	CTGGAG	2 cut(s)	33, 426
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	2 cut(s)	360, 476
Hin1II	CATG	2 cut(s)	465, 631
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	2 cut(s)	363, 684
HpaII	CCGG	2 cut(s)	360, 476
HphI	GGTGA	4 cut(s)	421, 533, 544, 899
Hpy166II	GTNNAC	4 cut(s)	212, 310, 481, 811
Hpy188I	TCNGA	3 cut(s)	417, 695, 914
Hpy188III	TCNNGA	3 cut(s)	139, 405, 576
Hpy8I	GTNNAC	4 cut(s)	212, 310, 481, 811
HpyAV	CCTTC	6 cut(s)	51, 179, 317, 523, 582, 878
HpyCH4III	ACNGT	4 cut(s)	11, 163, 568, 703
HpyCH4V	TGCA	7 cut(s)	147, 212, 239, 350, 446, 785, 821
HpyF10VI	GCNNNNNNNGC	9 cut(s)	153, 209, 293, 333, 342, 443, 686, 695, 782
HpyF3I	CTNAG	1 cut(s)	34
Hsp92II	CATG	2 cut(s)	465, 631
Kzo9I	GATC	2 cut(s)	100, 107
LmnI	GCTCC	9 cut(s)	43, 79, 188, 251, 407, 488, 695, 740, 906
Lsp1109I	GCAGC	6 cut(s)	131, 159, 362, 430, 769, 858
LweI	GCATC	1 cut(s)	512
MaeI	CTAG	4 cut(s)	263, 470, 660, 767
MaeIII	GTNAC	5 cut(s)	52, 395, 427, 562, 637
MalI	GATC	2 cut(s)	102, 109
MboI	GATC	2 cut(s)	100, 107
MboII	GAAGA	2 cut(s)	194, 893
MhlI	GDGCHC	5 cut(s)	76, 214, 412, 493, 838
MluCI	AATT	2 cut(s)	257, 674
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	673
MnlI	CCTC	8 cut(s)	16, 43, 87, 234, 364, 635, 824, 871
MseI	TTAA	1 cut(s)	711
MslI	CAYNNNNRTG	2 cut(s)	508, 632
MspI	CCGG	2 cut(s)	360, 476
MspR9I	CCNGG	2 cut(s)	60, 69
MvaI	CCWGG	2 cut(s)	60, 69
MvnI	CGCG	1 cut(s)	689
MwoI	GCNNNNNNNGC	9 cut(s)	153, 209, 293, 333, 342, 443, 686, 695, 782
NdeI	CATATG	1 cut(s)	803
NdeII	GATC	2 cut(s)	100, 107
NlaIII	CATG	2 cut(s)	465, 631
NlaIV	GGNNCC	1 cut(s)	853
NmuCI	GTSAC	3 cut(s)	395, 427, 637
PceI	AGGCCT	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	684
PflMI	CCANNNNNTGG	1 cut(s)	830
PinAI	ACCGGT	1 cut(s)	475
PkrI	GCNGC	6 cut(s)	146, 149, 352, 445, 784, 873
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
Psp124BI	GAGCTC	1 cut(s)	412
Psp6I	CCWGG	2 cut(s)	58, 67
PspFI	CCCAGC	2 cut(s)	287, 725
PspGI	CCWGG	2 cut(s)	58, 67
PspN4I	GGNNCC	1 cut(s)	853
PspPI	GGNCC	1 cut(s)	770
PstI	CTGCAG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	474, 482
RsaNI	GTAC	2 cut(s)	473, 481
RseI	CAYNNNNRTG	2 cut(s)	508, 632
SacI	GAGCTC	1 cut(s)	412
SaqAI	TTAA	1 cut(s)	711
SatI	GCNGC	6 cut(s)	145, 148, 351, 444, 783, 872
Sau3AI	GATC	2 cut(s)	100, 107
Sau96I	GGNCC	1 cut(s)	770
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	2 cut(s)	60, 69
SduI	GDGCHC	5 cut(s)	76, 214, 412, 493, 838
SfaNI	GCATC	1 cut(s)	512
SfcI	CTRYAG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	2 cut(s)	508, 632
SmlI	CTYRAG	2 cut(s)	137, 449
SmoI	CTYRAG	2 cut(s)	137, 449
SpeI	ACTAGT	1 cut(s)	469
Sse9I	AATT	2 cut(s)	257, 674
SseBI	AGGCCT	1 cut(s)	345
SsiI	CCGC	3 cut(s)	680, 689, 843
SspMI	CTAG	4 cut(s)	263, 470, 660, 767
SstI	GAGCTC	1 cut(s)	412
StuI	AGGCCT	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	58, 67
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	4 cut(s)	11, 163, 568, 703
TaqI	TCGA	2 cut(s)	389, 746
TasI	AATT	2 cut(s)	257, 674
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	1 cut(s)	684
Tru1I	TTAA	1 cut(s)	711
Tru9I	TTAA	1 cut(s)	711
TscAI	CASTG	2 cut(s)	646, 823
TseFI	GTSAC	3 cut(s)	395, 427, 637
TseI	GCWGC	6 cut(s)	144, 147, 350, 443, 782, 871
Tsp45I	GTSAC	3 cut(s)	395, 427, 637
TspDTI	ATGAA	3 cut(s)	262, 598, 764
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	646, 823
Van91I	CCANNNNNTGG	1 cut(s)	830
VneI	GTGCAC	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	1 cut(s)	257
XmaJI	CCTAGG	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	810
XspI	CTAG	4 cut(s)	263, 470, 660, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.