Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002080

Physical Location & Seq

Genomic Coordinates Reverse (-)

35730354 .. 35734460

Gene Structure 4107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0310800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGCCTGAGAGAAAGCTAACGGCGGTGGCTGTGGTGGCCTTCCAAGAAGGGGTCGGGTTGGTTCTGTCGCGGTGGTCGGCGCTTCAATTGGCCGTCGATAACGAGTGGGGTGGCCGTGAATCGCGCCTCAAGGCCGAGCAACTGGTCTCTGATATCGTCTCCTGGGTCAATTTCTCCACCGAACCTCTTTATATAGATGATTTAGAAGAAATGCTCATTGAAGCTATGAGTTTTCTCAATACTGTGATAGAGGATGGTAGCATTGAGGAGGTAGCTGAAAAAATAATGATTATGCATGAAGAATGTTTGGATTGCAATTTCAAGTCTATTGAAAGCCTAAGGGAAGCCAATAGTCGAAGAGTTCCTACTCCTCATGTTAAACAGGTTGTCAATGATGAAGAAGACAGTGACGAGGATGATGATGATACTGATCCTAGCATGAATAAAGATGATTCATCAAACATGATTGTGGACAAACCAGAGTCTCATGCAGTAGAGCCAAAGACCAAGCAGGTAGTTGAAGCGGAAGATGGTTGGGAGGTAGTCGGAACAAGAAGAAGTAGGGGTAAAAGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0007154 GO:0008150 GO:0008509 GO:0008643 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015144 GO:0015166 GO:0015168 GO:0015204 GO:0015238 GO:0015318 GO:0015698 GO:0015791 GO:0015793 GO:0015840 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034219 GO:0034220 GO:0035445 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071496 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080029 GO:0098656 GO:0098660 GO:0098661 GO:1901618

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

193

Amino Acids

21.82

Weight (kDa)

4.37

Isoelectric Point (pI)

66.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WGG	PF10273	15 - 94	4.5e-24	Pre-rRNA-processing protein TSR2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15910 AT4G00380 AT4G00380 AT4G00380
fragaria_vesca	FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780
malus_domestica	MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1
prunus_persica	Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621
rosa_laevigata	RLG00000019313 RLG00000019320
rosa_multiflora	Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111310 Rroxscaffold_2G00111340
rosa_rugosa	Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800
rosa_samantha	Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500
rosa_wichuraiana	Rw2G029490 Rw2G029510 Rw4G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	505
AccII	CGCG	2 cut(s)	73, 127
AciI	CCGC	3 cut(s)	26, 73, 527
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	2 cut(s)	93, 115
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	5 cut(s)	89, 224, 325, 335, 524
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	3 cut(s)	19, 227, 278
AluI	AGCT	3 cut(s)	19, 227, 278
Alw26I	GTCTC	3 cut(s)	154, 166, 492
AlwI	GGATC	1 cut(s)	428
AoxI	GGCC	4 cut(s)	39, 93, 115, 135
AspLEI	GCGC	2 cut(s)	85, 129
AxyI	CCTNAGG	1 cut(s)	341
BarI	GAAGNNNNNNTAC	2 cut(s)	352, 384
BbsI	GAAGAC	1 cut(s)	411
BccI	CCATC	2 cut(s)	251, 527
BceAI	ACGGC	3 cut(s)	39, 80, 102
BciT130I	CCWGG	1 cut(s)	166
BcoDI	GTCTC	3 cut(s)	154, 166, 492
BfaI	CTAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	505
Bme1390I	CCNGG	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	432
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	150
Bse21I	CCTNAGG	1 cut(s)	341
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	2 cut(s)	262, 424
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	2 cut(s)	284, 363
Bsh1236I	CGCG	2 cut(s)	73, 127
BshFI	GGCC	4 cut(s)	41, 95, 117, 137
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	3 cut(s)	154, 166, 492
BsmBI	CGTCTC	1 cut(s)	166
BsnI	GGCC	4 cut(s)	41, 95, 117, 137
Bso31I	GGTCTC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	3 cut(s)	26, 73, 527
BspANI	GGCC	4 cut(s)	41, 95, 117, 137
BspFNI	CGCG	2 cut(s)	73, 127
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	247, 410
Bst6I	CTCTTC	1 cut(s)	355
BstDEI	CTNAG	2 cut(s)	9, 341
BstF5I	GGATG	2 cut(s)	262, 424
BstFNI	CGCG	2 cut(s)	73, 127
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	85, 129
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	3 cut(s)	154, 166, 492
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstUI	CGCG	2 cut(s)	73, 127
BstV2I	GAAGAC	1 cut(s)	411
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	4 cut(s)	41, 95, 117, 137
BtsCI	GGATG	2 cut(s)	262, 424
BtsIMutI	CAGTG	1 cut(s)	415
BveI	ACCTGC	1 cut(s)	505
CfoI	GCGC	2 cut(s)	85, 129
CviAII	CATG	5 cut(s)	299, 377, 442, 466, 491
DdeI	CTNAG	2 cut(s)	9, 341
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
EaeI	YGGCCR	2 cut(s)	93, 115
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	157
Eco81I	CCTNAGG	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	164
EcoRV	GATATC	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	5 cut(s)	302, 380, 445, 469, 494
FaiI	YATR	9 cut(s)	195, 197, 230, 296, 300, 378, 443, 467, 492
FatI	CATG	5 cut(s)	298, 376, 441, 465, 490
FokI	GGATG	2 cut(s)	269, 431
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	2 cut(s)	84, 128
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	4 cut(s)	41, 95, 117, 137
HhaI	GCGC	2 cut(s)	85, 129
Hin1II	CATG	5 cut(s)	302, 380, 445, 469, 494
Hin6I	GCGC	2 cut(s)	83, 127
HinP1I	GCGC	2 cut(s)	83, 127
HinfI	GANTC	3 cut(s)	122, 455, 485
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	2 cut(s)	154, 551
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	44, 52
HpyCH4III	ACNGT	2 cut(s)	247, 410
HpyCH4V	TGCA	3 cut(s)	298, 318, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	9, 341
Hsp92II	CATG	5 cut(s)	302, 380, 445, 469, 494
HspAI	GCGC	2 cut(s)	83, 127
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	21, 131, 151, 178, 371, 495, 500
MaeI	CTAG	1 cut(s)	438
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	7 cut(s)	221, 314, 372, 413, 416, 542, 570
MfeI	CAATTG	1 cut(s)	89
MluCI	AATT	4 cut(s)	89, 172, 319, 577
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	8 cut(s)	140, 198, 247, 262, 265, 384, 409, 535
Mph1103I	ATGCAT	1 cut(s)	300
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	166
MunI	CAATTG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	2 cut(s)	73, 127
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	5 cut(s)	302, 380, 445, 469, 494
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	410
NsiI	ATGCAT	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	122, 455
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	1 cut(s)	381
Sau3AI	GATC	1 cut(s)	433
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	8 cut(s)	21, 190, 229, 276, 280, 390, 519, 546
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	4 cut(s)	89, 172, 319, 577
SsiI	CCGC	3 cut(s)	26, 73, 527
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	247, 410
TaqI	TCGA	2 cut(s)	99, 358
TasI	AATT	4 cut(s)	89, 172, 319, 577
TfiI	GAWTC	2 cut(s)	122, 455
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	4 cut(s)	315, 414, 447, 458
TspRI	CASTG	1 cut(s)	415
XspI	CTAG	1 cut(s)	438
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.