MD17G1221900.v1.1

XH domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
27034557 .. 27039920
5364 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1221900.v1.1.491

Sequence Viewer

Length: 1812 bp
ATGTATATGGTAAAGTGTCCTAATGGAGCTCTCAGATGCCCATTTTGTGTGGGGAAGAAGAAGCAGGATTACAAGTTTAAGGAACTGTTCCAGCATGCGTCTGGAGTGGCTAAGGGTTCTGCTAACAGGAGTGCGAAACAGAAGGCAAATCACCTTGCCTTGGCCATCTATTTGGAGACTGATCTAGCAAGTGAAGCAGACCCAACAGAACTTCCAGTTTTGCCTACACCTGTCGCTCACCAAGAGAAGGAAGAAGATCTCTACGTGTGGCCTTGGACTGGCATCATTGCAAACATAGTGAGCCAACCAAAGGACCCAAAAGATCTTGATTCTCGATACTGGTTGAGAAGGTTTGCTCAATTTAGACCTACCGAAGTTCATACATTGTGGACTGAAGAGGATCGAGCTACATGTGCTGTGGTTTACTTTAATGCAGATTGGACTGGTTTGGGGAATGCGACAGATTTTGAGAAAATGTTTGAAACAGATCATCACAGTAAAATGGATTGGAATACAAGAAAGCAACAGCCGGGCTCAAGCATCTATGGGTGGTGTGCACGTGCTGATGATTATCATTCCCAAGGGCCAATTGGGGAGTTTCTTCGCAAAACTGGAAAGTTAAGAACAGTATCCGACATTGTCCAGGAAGCAGCTCAAAACAGAAATGATGAGGTGGCCAACCTAGCCAACAAAATTGAGTTGACAAATGAAAACCTGTTGAAAGCACAGTACAAGTACAATGAGAAGACGATGTCTTTAAGTAGGATGCTTAAAGAAAAAGACAAGCTACACAATGACTTTGTTAAAGAAACGAAGAAGATACAGGACATAGCAAAACATAATGTCAAGAGAATATTAGAGGAACAAGAGAAACTGAATCATGAGTTGGAATATAAGAAAAAGAAACTTGATACCTGGAGCAAAGAATTAAACAAACGTGAAGCACTGACTGAGCGTGAGAGACAAAAACTTGATGAGGATAAGAAGAAGAATGATGAGAGAAACAATTCCCTTAATTTAGCTTCTGAGGAGCAGAAAAAGGCTGATGCGAGTGTCTTGAGGCTGGTTGAACAACAAAAGAGGGAAAAAGAGGATGCCTTAAATAAAATACTTGAGTTAGAAAAGCAGTTGGATGCTAAACAGAAGTTGGAAATGGAGATTGAAGAGATAAAAGGGAAATTAGAGGTGATGAAGCATCTTGGGGATCAAGATGATGATGCAGTTCAATCGAAGATCAAAAAAATGGAAGATGAATTGGGGGAAAAAGTTGATGAACTTGAGGATTTAGAATCACTAAATCAAACTCTAATCACCAAAGAACGCCAAAGCAATGATGAGTTACAAGAGGCTCGCAAAGTATTAATAGCAGGTTTAAGTGAATTGTTGAGTGGTCGATCTCATATTGGGATAAAGAGAATGGGTGATCTCGATCAGAAACCCTTCTTGAAAGCATGCAAGGAACGGTACTCTCTTGAGGAAGCAGAGATGCAGGCCTTCACTCAATGCTCCTTATGGCAAAATAATCTGACAAATTCAGAGTGGCATCCATTCAAGATTGTAACTGTTACTGAGCAGCCCGAGGAAATAGTCAATGAGGAAGATGAGAAACTGAGAAGTCTGAAGGAGGATTGGGGCACTGATATATATGAGTGTGTCGTGACAGCCCTGAAAGAACTCAATGAGTACAATCCAAGTGGGAGGTATGTTATCCCTGAACTGTGGAATTTTAAAGAAGGAAGGAAAGCCACGTTGAAGGAGGTTATCTCTTTTGTTTTAAAGAATATAAAGACACTCAAGCGAAAGAGAAAGTGA

Protein Analysis

604

Amino Acids

70.23

Weight (kDa)

6.13

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-XS PF03470 13 - 55 1.1e-20 XS zinc finger domain
XS PF03468 85 - 192 4.2e-34 XS domain
XH PF03469 471 - 601 1e-56 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1358
AclWI GGATC 2 cut(s) 408, 1212
AcoI YGGCCR 2 cut(s) 162, 675
AcsI RAATTY 2 cut(s) 1531, 1723
AcuI CTGAAG 2 cut(s) 414, 1640
AcvI CACGTG 1 cut(s) 560
AfaI GTAC 4 cut(s) 731, 737, 1466, 1685
AfiI CCNNNNNNNGG 4 cut(s) 160, 247, 278, 310
AflIII ACRYGT 2 cut(s) 264, 410
AgsI TTSAA 8 cut(s) 482, 721, 1070, 1163, 1226, 1447, 1552, 1753
AjnI CCWGG 2 cut(s) 642, 914
AjuI GAANNNNNNNTTGG 2 cut(s) 869, 901
AluBI AGCT 5 cut(s) 29, 407, 653, 787, 1022
AluI AGCT 5 cut(s) 29, 407, 653, 787, 1022
Alw21I GWGCWC 2 cut(s) 31, 559
Alw26I GTCTC 2 cut(s) 170, 955
Alw44I GTGCAC 1 cut(s) 555
AlwI GGATC 2 cut(s) 408, 1212
Ama87I CYCGRG 1 cut(s) 1577
AoxI GGCC 5 cut(s) 162, 269, 584, 675, 1491
ApaLI GTGCAC 1 cut(s) 555
ApeKI GCWGC 2 cut(s) 650, 1573
ApoI RAATTY 2 cut(s) 1531, 1723
AseI ATTAAT 1 cut(s) 1361
Asp700I GAANNNNTTC 2 cut(s) 1006, 1439
AspS9I GGNCC 2 cut(s) 313, 584
AsuC2I CCSGG 1 cut(s) 531
AsuHPI GGTGA 5 cut(s) 143, 230, 1198, 1303, 1433
AvaI CYCGRG 1 cut(s) 1577
AvaII GGWCC 1 cut(s) 313
BaeGI GKGCMC 2 cut(s) 559, 1637
BalI TGGCCA 2 cut(s) 164, 677
BanII GRGCYC 2 cut(s) 31, 536
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
BbrPI CACGTG 1 cut(s) 560
BbsI GAAGAC 1 cut(s) 752
Bbv12I GWGCWC 2 cut(s) 31, 559
BbvI GCAGC 2 cut(s) 662, 1585
BccI CCATC 1 cut(s) 173
BcgI CGANNNNNNTGC 2 cut(s) 1209, 1243
BciT130I CCWGG 2 cut(s) 644, 916
BciVI GTATCC 1 cut(s) 640
BcnI CCSGG 1 cut(s) 531
BcoDI GTCTC 2 cut(s) 170, 955
BfaI CTAG 2 cut(s) 185, 683
BfuAI ACCTGC 1 cut(s) 1358
BfuI GTATCC 1 cut(s) 640
BglII AGATCT 2 cut(s) 256, 322
BisI GCNGC 2 cut(s) 651, 1574
BlsI GCNGC 2 cut(s) 652, 1575
Bme1390I CCNGG 3 cut(s) 531, 644, 916
Bme18I GGWCC 1 cut(s) 313
BmeT110I CYCGRG 1 cut(s) 1577
BmgT120I GGNCC 2 cut(s) 313, 584
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 3 cut(s) 531, 644, 916
BpiI GAAGAC 1 cut(s) 752
BplI GAGNNNNNCTC 2 cut(s) 1748, 1780
BpmI CTGGAG 2 cut(s) 123, 937
Bpu10I CCTNAGC 1 cut(s) 111
BpuEI CTTGAG 6 cut(s) 520, 1078, 1133, 1298, 1493, 1778
BpuMI CCSGG 1 cut(s) 531
BsaAI YACGTR 2 cut(s) 265, 560
BsaBI GATNNNNATC 2 cut(s) 570, 1428
BsaJI CCNNGG 4 cut(s) 159, 272, 580, 1578
Bsc4I CCNNNNNNNGG 4 cut(s) 160, 247, 278, 310
Bse1I ACTGG 5 cut(s) 215, 283, 344, 448, 616
Bse3DI GCAATG 2 cut(s) 285, 1336
Bse8I GATNNNNATC 2 cut(s) 570, 1428
BseBI CCWGG 2 cut(s) 644, 916
BseDI CCNNGG 4 cut(s) 159, 272, 580, 1578
BseGI GGATG 4 cut(s) 771, 1099, 1138, 1543
BseJI GATNNNNATC 2 cut(s) 570, 1428
BseLI CCNNNNNNNGG 4 cut(s) 160, 247, 278, 310
BseMI GCAATG 2 cut(s) 285, 1336
BseMII CTCAG 5 cut(s) 46, 942, 1017, 1560, 1601
BseNI ACTGG 5 cut(s) 215, 283, 344, 448, 616
BseRI GAGGAG 1 cut(s) 1043
BseSI GKGCMC 2 cut(s) 559, 1637
BseXI GCAGC 2 cut(s) 662, 1585
BshFI GGCC 5 cut(s) 164, 271, 586, 677, 1493
BsiHKAI GWGCWC 2 cut(s) 31, 559
BsiHKCI CYCGRG 1 cut(s) 1577
BsiSI CCGG 1 cut(s) 530
BslI CCNNNNNNNGG 4 cut(s) 160, 247, 278, 310
BsmAI GTCTC 2 cut(s) 170, 955
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 5 cut(s) 164, 271, 586, 677, 1493
BsoBI CYCGRG 1 cut(s) 1577
Bsp1286I GDGCHC 4 cut(s) 31, 536, 559, 1637
BspANI GGCC 5 cut(s) 164, 271, 586, 677, 1493
BspCNI CTCAG 5 cut(s) 45, 943, 1018, 1561, 1602
BspHI TCATGA 1 cut(s) 880
BspLI GGNNCC 1 cut(s) 315
BspMI ACCTGC 1 cut(s) 1358
BspPI GGATC 2 cut(s) 408, 1212
BsrDI GCAATG 2 cut(s) 285, 1336
BsrI ACTGG 5 cut(s) 215, 283, 344, 448, 616
BssECI CCNNGG 4 cut(s) 159, 272, 580, 1578
BssT1I CCWWGG 3 cut(s) 159, 272, 580
Bst2UI CCWGG 2 cut(s) 644, 916
Bst4CI ACNGT 7 cut(s) 87, 497, 628, 729, 1464, 1564, 1719
Bst6I CTCTTC 2 cut(s) 390, 1158
BstBAI YACGTR 2 cut(s) 265, 560
BstC8I GCNNGC 4 cut(s) 96, 1351, 1453, 1491
BstDEI CTNAG 6 cut(s) 32, 111, 951, 1026, 1569, 1610
BstF5I GGATG 4 cut(s) 771, 1099, 1138, 1543
BstMAI GTCTC 2 cut(s) 170, 955
BstMWI GCNNNNNNNGC 3 cut(s) 194, 413, 683
BstNI CCWGG 2 cut(s) 644, 916
BstNSI RCATGY 3 cut(s) 98, 414, 1455
BstSCI CCNGG 3 cut(s) 529, 642, 914
BstSLI GKGCMC 2 cut(s) 559, 1637
BstV1I GCAGC 2 cut(s) 662, 1585
BstV2I GAAGAC 1 cut(s) 752
BstX2I RGATCY 2 cut(s) 256, 322
BstXI CCANNNNNNTGG 1 cut(s) 172
BstYI RGATCY 2 cut(s) 256, 322
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 5 cut(s) 164, 271, 586, 677, 1493
BtsCI GGATG 4 cut(s) 771, 1099, 1138, 1543
BtsIMutI CAGTG 2 cut(s) 944, 1635
BveI ACCTGC 1 cut(s) 1358
Cac8I GCNNGC 4 cut(s) 96, 1351, 1453, 1491
CciI TCATGA 1 cut(s) 880
Cfr13I GGNCC 2 cut(s) 313, 584
CseI GACGC 1 cut(s) 87
Csp6I GTAC 4 cut(s) 730, 736, 1465, 1684
CspCI CAANNNNNGTGG 2 cut(s) 1675, 1710
CviAII CATG 4 cut(s) 95, 411, 881, 1452
CviQI GTAC 4 cut(s) 730, 736, 1465, 1684
DdeI CTNAG 6 cut(s) 32, 111, 951, 1026, 1569, 1610
DraI TTTAAA 2 cut(s) 1729, 1776
EaeI YGGCCR 2 cut(s) 162, 675
Eam1104I CTCTTC 2 cut(s) 390, 1158
EarI CTCTTC 2 cut(s) 390, 1158
Ecl136II GAGCTC 1 cut(s) 29
Eco130I CCWWGG 3 cut(s) 159, 272, 580
Eco147I AGGCCT 1 cut(s) 1493
Eco24I GRGCYC 2 cut(s) 31, 536
Eco47I GGWCC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 29
Eco57I CTGAAG 2 cut(s) 414, 1640
Eco72I CACGTG 1 cut(s) 560
Eco88I CYCGRG 1 cut(s) 1577
EcoICRI GAGCTC 1 cut(s) 29
EcoO109I RGGNCCY 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 642, 914
EcoT14I CCWWGG 3 cut(s) 159, 272, 580
EcoT38I GRGCYC 2 cut(s) 31, 536
ErhI CCWWGG 3 cut(s) 159, 272, 580
FaeI CATG 4 cut(s) 98, 414, 884, 1455
FatI CATG 4 cut(s) 94, 410, 880, 1451
Fnu4HI GCNGC 2 cut(s) 651, 1574
FokI GGATG 4 cut(s) 778, 1106, 1145, 1530
FriOI GRGCYC 2 cut(s) 31, 536
Fsp4HI GCNGC 2 cut(s) 651, 1574
FspBI CTAG 2 cut(s) 185, 683
GluI GCNGC 2 cut(s) 651, 1574
GsuI CTGGAG 2 cut(s) 123, 937
HaeIII GGCC 5 cut(s) 164, 271, 586, 677, 1493
HapII CCGG 1 cut(s) 530
HgaI GACGC 1 cut(s) 87
Hin1II CATG 4 cut(s) 98, 414, 884, 1455
HincII GTYRAC 1 cut(s) 702
HindII GTYRAC 1 cut(s) 702
HinfI GANTC 3 cut(s) 329, 877, 1289
HpaII CCGG 1 cut(s) 530
HphI GGTGA 5 cut(s) 143, 230, 1198, 1303, 1433
Hpy166II GTNNAC 4 cut(s) 390, 424, 557, 702
Hpy188I TCNGA 7 cut(s) 35, 634, 1027, 1434, 1527, 1537, 1620
Hpy8I GTNNAC 4 cut(s) 390, 424, 557, 702
HpyAV CCTTC 9 cut(s) 136, 241, 342, 1450, 1504, 1615, 1727, 1731, 1747
HpyCH4III ACNGT 7 cut(s) 87, 497, 628, 729, 1464, 1564, 1719
HpyCH4IV ACGT 4 cut(s) 264, 559, 937, 1748
HpyCH4V TGCA 6 cut(s) 290, 434, 557, 1220, 1455, 1489
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 413, 683
HpyF3I CTNAG 6 cut(s) 32, 111, 951, 1026, 1569, 1610
HpySE526I ACGT 4 cut(s) 264, 559, 937, 1748
Hsp92II CATG 4 cut(s) 98, 414, 884, 1455
LmnI GCTCC 4 cut(s) 26, 918, 1030, 1511
Lsp1109I GCAGC 2 cut(s) 662, 1585
MaeI CTAG 2 cut(s) 185, 683
MaeII ACGT 4 cut(s) 264, 559, 937, 1748
MaeIII GTNAC 4 cut(s) 1338, 1558, 1564, 1657
MfeI CAATTG 1 cut(s) 588
MflI RGATCY 2 cut(s) 256, 322
MhlI GDGCHC 4 cut(s) 31, 536, 559, 1637
MlsI TGGCCA 2 cut(s) 164, 677
MluNI TGGCCA 2 cut(s) 164, 677
MmeI TCCRAC 4 cut(s) 657, 867, 1110, 1128
Mox20I TGGCCA 2 cut(s) 164, 677
MroXI GAANNNNTTC 2 cut(s) 1006, 1439
MscI TGGCCA 2 cut(s) 164, 677
Msp20I TGGCCA 2 cut(s) 164, 677
MspI CCGG 1 cut(s) 530
MspR9I CCNGG 3 cut(s) 531, 644, 916
MunI CAATTG 1 cut(s) 588
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 2 cut(s) 644, 916
MwoI GCNNNNNNNGC 3 cut(s) 194, 413, 683
NciI CCSGG 1 cut(s) 531
NlaIII CATG 4 cut(s) 98, 414, 884, 1455
NlaIV GGNNCC 1 cut(s) 315
NmuCI GTSAC 1 cut(s) 1657
NspI RCATGY 3 cut(s) 98, 414, 1455
PaeI GCATGC 2 cut(s) 98, 1455
PagI TCATGA 1 cut(s) 880
PceI AGGCCT 1 cut(s) 1493
PciI ACATGT 1 cut(s) 410
PctI GAATGC 1 cut(s) 460
PdmI GAANNNNTTC 2 cut(s) 1006, 1439
PfeI GAWTC 3 cut(s) 329, 877, 1289
PflFI GACNNNGTC 2 cut(s) 638, 751
PfoI TCCNGGA 1 cut(s) 642
PkrI GCNGC 2 cut(s) 652, 1575
PmaCI CACGTG 1 cut(s) 560
PmlI CACGTG 1 cut(s) 560
Ppu21I YACGTR 2 cut(s) 265, 560
PpuMI RGGWCCY 1 cut(s) 313
PscI ACATGT 1 cut(s) 410
PshBI ATTAAT 1 cut(s) 1361
Psp124BI GAGCTC 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 313
Psp6I CCWGG 2 cut(s) 642, 914
PspCI CACGTG 1 cut(s) 560
PspGI CCWGG 2 cut(s) 642, 914
PspN4I GGNNCC 1 cut(s) 315
PspPI GGNCC 2 cut(s) 313, 584
PspPPI RGGWCCY 1 cut(s) 313
PsuI RGATCY 2 cut(s) 256, 322
PsyI GACNNNGTC 2 cut(s) 638, 751
RsaI GTAC 4 cut(s) 731, 737, 1466, 1685
RsaNI GTAC 4 cut(s) 730, 736, 1465, 1684
SacI GAGCTC 1 cut(s) 31
SatI GCNGC 2 cut(s) 651, 1574
Sau96I GGNCC 2 cut(s) 313, 584
ScrFI CCNGG 3 cut(s) 531, 644, 916
SduI GDGCHC 4 cut(s) 31, 536, 559, 1637
SinI GGWCC 1 cut(s) 313
SmlI CTYRAG 6 cut(s) 535, 1057, 1112, 1277, 1472, 1793
SmoI CTYRAG 6 cut(s) 535, 1057, 1112, 1277, 1472, 1793
SphI GCATGC 2 cut(s) 98, 1455
SseBI AGGCCT 1 cut(s) 1493
SspI AATATT 1 cut(s) 855
SspMI CTAG 2 cut(s) 185, 683
SstI GAGCTC 1 cut(s) 31
StuI AGGCCT 1 cut(s) 1493
StyD4I CCNGG 3 cut(s) 529, 642, 914
StyI CCWWGG 3 cut(s) 159, 272, 580
TaaI ACNGT 7 cut(s) 87, 497, 628, 729, 1464, 1564, 1719
TaiI ACGT 4 cut(s) 267, 562, 940, 1751
TaqI TCGA 5 cut(s) 334, 403, 1229, 1393, 1428
TatI WGTACW 3 cut(s) 729, 735, 1683
TfiI GAWTC 3 cut(s) 329, 877, 1289
TscAI CASTG 2 cut(s) 951, 1642
TseFI GTSAC 1 cut(s) 1657
TseI GCWGC 2 cut(s) 650, 1573
Tsp45I GTSAC 1 cut(s) 1657
TspDTI ATGAA 5 cut(s) 368, 723, 1205, 1266, 1287
TspRI CASTG 2 cut(s) 951, 1642
Tth111I GACNNNGTC 2 cut(s) 638, 751
VneI GTGCAC 1 cut(s) 555
VpaK11BI GGWCC 1 cut(s) 313
VspI ATTAAT 1 cut(s) 1361
XapI RAATTY 2 cut(s) 1531, 1723
XceI RCATGY 3 cut(s) 98, 414, 1455
XcmI CCANNNNNNNNNTGG 2 cut(s) 98, 587
XmnI GAANNNNTTC 2 cut(s) 1006, 1439
XspI CTAG 2 cut(s) 185, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.