Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002080

Physical Location & Seq

Genomic Coordinates Reverse (-)

35695964 .. 35701981

Gene Structure 6018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0310400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAACGGCGGCCCATCGGGTTTCCACAATGCTCCTGTTACCAGAGCCTTCGTTATTTCCAGCGCTCTCTTCACCGTATTCTTCGGGATCCAGGGCCGTTCAACCAAGCTTGGATTATCCTATCTGGATATTTTTGGGAAGTTTCGCCTTTGGAAGTTAATCGTGTCAGTTTTTGCCTTTTCATCTACACCAGAACTGATGTTTGGACTGTATCTGCTCTACTACTTCAGGGTCTTTGAGAGACAGATAGGTTCCAATAAGTATTCGGTCTTTATCTTGTTCTCAGTGATGGCATCATTGCTCTTTGAGATCCTTGCGATAGCATTCCTTAAAGATCCTGCAGTAAACCTAGTGACATCGGGACCTTATGGTCTTATATTTGCATCGTTTGTACCCTTTTTCTTTGACATTCCAGTTTCAACACGTTTTCGCGTGTTTGGCGTGCACTTCTCAGACAAGTCTTTTATATATCTAGCAGGCCTTCAGCTTCTTTTATCATCTTGGAAAAGATCAGTCTTACCAGGGATATGTGGCATCCTTTGTGGTTCCTTATATCATCTGAATGTCTTCTGTATCCGCAAAGCAAAGTTCCCAGAAGTCATTGCATCTTTCTTTTCACGACTTTCCTTGCCAACTATGGGGAGTCTGCCAGCAGCACCAACCAGAAATATTGCGGGAAGTGTACCATCATTCACAGCTCAGCAAGTGGAGAGAAATTATCCCTCGCCCATGTTGTCTACCACAGAGCCAACGGAGGACTCCATTGCTACCCTTGTTTCTATGGGTTTTGATAGGAACTCTGCCAGACAAGCACTAGTGCATGCCAGAAATGATGTCACTGCGGCGACAAACATCCTGTTAGAAGCACAGGCCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003725 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010468 GO:0010569 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

292

Amino Acids

32.29

Weight (kDa)

9.64

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	49 - 187	3.6e-06	Rhomboid domain
UBA	PF00627	251 - 286	1e-10	UBA/TS-N domain
UBA_7	PF22562	252 - 290	2.9e-08	UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15910 AT4G00380 AT4G00380 AT4G00380
fragaria_vesca	FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780
malus_domestica	MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1
prunus_persica	Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621
rosa_laevigata	RLG00000019313 RLG00000019320
rosa_multiflora	Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111310 Rroxscaffold_2G00111340
rosa_rugosa	Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800
rosa_samantha	Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500
rosa_wichuraiana	Rw2G029490 Rw2G029510 Rw4G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	369
AccI	GTMKAC	1 cut(s)	737
AccII	CGCG	1 cut(s)	432
AciI	CCGC	4 cut(s)	9, 577, 674, 842
AclWI	GGATC	4 cut(s)	82, 95, 304, 329
AcuI	CTGAAG	2 cut(s)	211, 467
AfaI	GTAC	2 cut(s)	393, 684
AfeI	AGCGCT	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	638
AflIII	ACRYGT	1 cut(s)	422
AgsI	TTSAA	2 cut(s)	102, 420
AhlI	ACTAGT	1 cut(s)	814
AjnI	CCWGG	2 cut(s)	90, 520
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	3 cut(s)	109, 487, 698
AluI	AGCT	3 cut(s)	109, 487, 698
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	1 cut(s)	235
Alw44I	GTGCAC	1 cut(s)	443
AlwI	GGATC	4 cut(s)	82, 95, 304, 329
Aor51HI	AGCGCT	1 cut(s)	64
AoxI	GGCC	4 cut(s)	10, 94, 478, 870
ApaLI	GTGCAC	1 cut(s)	443
ApeKI	GCWGC	1 cut(s)	653
Asp700I	GAANNNNTTC	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	4 cut(s)	11, 94, 362, 871
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	362
BaeGI	GKGCMC	1 cut(s)	447
BamHI	GGATCC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	559
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	1 cut(s)	665
BccI	CCATC	3 cut(s)	22, 283, 694
BceAI	ACGGC	2 cut(s)	22, 81
BciT130I	CCWGG	2 cut(s)	92, 522
BciVI	GTATCC	1 cut(s)	584
BcoDI	GTCTC	1 cut(s)	235
BcuI	ACTAGT	1 cut(s)	814
BfaI	CTAG	3 cut(s)	350, 473, 815
BfmI	CTRYAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	584
BisI	GCNGC	3 cut(s)	10, 654, 843
BlpI	GCTNAGC	1 cut(s)	699
BlsI	GCNGC	3 cut(s)	11, 655, 844
Bme1390I	CCNGG	2 cut(s)	92, 522
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	4 cut(s)	11, 94, 362, 871
BmiI	GGNNCC	4 cut(s)	89, 253, 363, 547
BmrFI	CCNGG	2 cut(s)	92, 522
BmsI	GCATC	4 cut(s)	302, 392, 543, 614
BpiI	GAAGAC	1 cut(s)	559
Bpu1102I	GCTNAGC	1 cut(s)	699
BsaJI	CCNNGG	2 cut(s)	91, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse1I	ACTGG	1 cut(s)	413
Bse3DI	GCAATG	3 cut(s)	296, 600, 762
BseBI	CCWGG	2 cut(s)	92, 522
BseDI	CCNNGG	2 cut(s)	91, 521
BseGI	GGATG	2 cut(s)	534, 852
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMI	GCAATG	3 cut(s)	296, 600, 762
BseMII	CTCAG	3 cut(s)	297, 465, 713
BseNI	ACTGG	1 cut(s)	413
BseSI	GKGCMC	1 cut(s)	447
BseXI	GCAGC	1 cut(s)	665
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	4 cut(s)	12, 96, 480, 872
BsiHKAI	GWGCWC	1 cut(s)	447
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	375
BsmI	GAATGC	1 cut(s)	323
BsnI	GGCC	4 cut(s)	12, 96, 480, 872
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	4 cut(s)	87, 309, 334, 509
Bsp1720I	GCTNAGC	1 cut(s)	699
BspACI	CCGC	4 cut(s)	9, 577, 674, 842
BspANI	GGCC	4 cut(s)	12, 96, 480, 872
BspCNI	CTCAG	3 cut(s)	296, 464, 712
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	4 cut(s)	89, 253, 363, 547
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	4 cut(s)	82, 95, 304, 329
BsrDI	GCAATG	3 cut(s)	296, 600, 762
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	2 cut(s)	91, 521
BssMI	GATC	4 cut(s)	87, 309, 334, 509
Bst2UI	CCWGG	2 cut(s)	92, 522
Bst4CI	ACNGT	2 cut(s)	76, 210
Bst6I	CTCTTC	1 cut(s)	74
BstC8I	GCNNGC	4 cut(s)	443, 478, 651, 822
BstDEI	CTNAG	3 cut(s)	283, 451, 699
BstF5I	GGATG	2 cut(s)	534, 852
BstFNI	CGCG	1 cut(s)	432
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	4 cut(s)	90, 312, 337, 512
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	4 cut(s)	87, 309, 334, 509
BstMWI	GCNNNNNNNGC	2 cut(s)	438, 809
BstNI	CCWGG	2 cut(s)	92, 522
BstNSI	RCATGY	1 cut(s)	824
BstSCI	CCNGG	2 cut(s)	90, 520
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	447
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	665
BstV2I	GAAGAC	1 cut(s)	559
BstX2I	RGATCY	3 cut(s)	87, 309, 334
BstYI	RGATCY	3 cut(s)	87, 309, 334
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	4 cut(s)	12, 96, 480, 872
BtsCI	GGATG	2 cut(s)	534, 852
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	3 cut(s)	291, 837, 874
Cac8I	GCNNGC	4 cut(s)	443, 478, 651, 822
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	4 cut(s)	11, 94, 362, 871
Csp6I	GTAC	2 cut(s)	392, 683
CviAII	CATG	2 cut(s)	730, 821
CviJI	RGCY	9 cut(s)	12, 47, 96, 109, 480, 487, 698, 748, 872
CviKI_1	RGCY	9 cut(s)	12, 47, 96, 109, 480, 487, 698, 748, 872
CviQI	GTAC	2 cut(s)	392, 683
DdeI	CTNAG	3 cut(s)	283, 451, 699
DpnI	GATC	4 cut(s)	89, 311, 336, 511
DpnII	GATC	4 cut(s)	87, 309, 334, 509
DrdI	GACNNNNNNGTC	1 cut(s)	369
DseDI	GACNNNNNNGTC	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco147I	AGGCCT	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	362
Eco47III	AGCGCT	1 cut(s)	64
Eco57I	CTGAAG	2 cut(s)	211, 467
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	90, 520
FaeI	CATG	2 cut(s)	733, 824
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	2 cut(s)	729, 820
FauI	CCCGC	1 cut(s)	667
FblI	GTMKAC	1 cut(s)	737
Fnu4HI	GCNGC	3 cut(s)	10, 654, 843
FokI	GGATG	2 cut(s)	521, 839
Fsp4HI	GCNGC	3 cut(s)	10, 654, 843
FspBI	CTAG	3 cut(s)	350, 473, 815
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	3 cut(s)	10, 654, 843
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	4 cut(s)	12, 96, 480, 872
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	733, 824
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	2 cut(s)	643, 758
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	4 cut(s)	346, 445, 683, 738
Hpy188I	TCNGA	2 cut(s)	454, 561
Hpy188III	TCNNGA	4 cut(s)	85, 125, 360, 618
Hpy8I	GTNNAC	4 cut(s)	346, 445, 683, 738
HpyAV	CCTTC	2 cut(s)	58, 491
HpyCH4III	ACNGT	2 cut(s)	76, 210
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	5 cut(s)	341, 383, 445, 605, 820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	438, 809
HpyF3I	CTNAG	3 cut(s)	283, 451, 699
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	2 cut(s)	733, 824
HspAI	GCGC	1 cut(s)	63
Kzo9I	GATC	4 cut(s)	87, 309, 334, 509
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	1 cut(s)	665
LweI	GCATC	4 cut(s)	302, 392, 543, 614
MaeI	CTAG	3 cut(s)	350, 473, 815
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	3 cut(s)	37, 352, 835
MalI	GATC	4 cut(s)	89, 311, 336, 511
MboI	GATC	4 cut(s)	87, 309, 334, 509
MboII	GAAGA	3 cut(s)	61, 73, 559
MflI	RGATCY	3 cut(s)	87, 309, 334
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	1 cut(s)	715
MlyI	GAGTC	2 cut(s)	652, 752
MnlI	CCTC	2 cut(s)	733, 748
MroXI	GAANNNNTTC	1 cut(s)	566
MseI	TTAA	2 cut(s)	158, 330
MslI	CAYNNNNRTG	1 cut(s)	561
MspR9I	CCNGG	2 cut(s)	92, 522
Mva1269I	GAATGC	1 cut(s)	323
MvaI	CCWGG	2 cut(s)	92, 522
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	2 cut(s)	438, 809
NdeII	GATC	4 cut(s)	87, 309, 334, 509
NlaIII	CATG	2 cut(s)	733, 824
NlaIV	GGNNCC	4 cut(s)	89, 253, 363, 547
NmuCI	GTSAC	2 cut(s)	352, 835
NspI	RCATGY	1 cut(s)	824
PaeI	GCATGC	1 cut(s)	824
PceI	AGGCCT	1 cut(s)	480
PctI	GAATGC	1 cut(s)	323
PdmI	GAANNNNTTC	1 cut(s)	566
PkrI	GCNGC	3 cut(s)	11, 655, 844
PleI	GAGTC	2 cut(s)	651, 752
PpsI	GAGTC	2 cut(s)	651, 752
PpuMI	RGGWCCY	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	2 cut(s)	90, 520
PspGI	CCWGG	2 cut(s)	90, 520
PspN4I	GGNNCC	4 cut(s)	89, 253, 363, 547
PspPI	GGNCC	4 cut(s)	11, 94, 362, 871
PspPPI	RGGWCCY	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	3 cut(s)	87, 309, 334
RsaI	GTAC	2 cut(s)	393, 684
RsaNI	GTAC	2 cut(s)	392, 683
RseI	CAYNNNNRTG	1 cut(s)	561
SaqAI	TTAA	2 cut(s)	158, 330
SatI	GCNGC	3 cut(s)	10, 654, 843
Sau3AI	GATC	4 cut(s)	87, 309, 334, 509
Sau96I	GGNCC	4 cut(s)	11, 94, 362, 871
SchI	GAGTC	2 cut(s)	652, 752
ScrFI	CCNGG	2 cut(s)	92, 522
SduI	GDGCHC	1 cut(s)	447
SetI	ASST	7 cut(s)	111, 253, 351, 367, 427, 489, 700
SfaNI	GCATC	4 cut(s)	302, 392, 543, 614
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	561
SpeI	ACTAGT	1 cut(s)	814
SphI	GCATGC	1 cut(s)	824
Sse9I	AATT	1 cut(s)	715
SseBI	AGGCCT	1 cut(s)	480
SsiI	CCGC	4 cut(s)	9, 577, 674, 842
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	3 cut(s)	350, 473, 815
StuI	AGGCCT	1 cut(s)	480
StyD4I	CCNGG	2 cut(s)	90, 520
TaaI	ACNGT	2 cut(s)	76, 210
TaiI	ACGT	1 cut(s)	427
TaqII	GACCGA	1 cut(s)	256
TasI	AATT	1 cut(s)	715
TauI	GCSGC	2 cut(s)	12, 845
Tru1I	TTAA	2 cut(s)	158, 330
Tru9I	TTAA	2 cut(s)	158, 330
TscAI	CASTG	2 cut(s)	291, 844
TseFI	GTSAC	2 cut(s)	352, 835
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	2 cut(s)	352, 835
TspDTI	ATGAA	2 cut(s)	17, 171
TspGWI	ACGGA	1 cut(s)	767
TspRI	CASTG	2 cut(s)	291, 844
VneI	GTGCAC	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	362
XceI	RCATGY	1 cut(s)	824
XmiI	GTMKAC	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	566
XspI	CTAG	3 cut(s)	350, 473, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.