Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002080

Physical Location & Seq

Genomic Coordinates Reverse (-)

53748736 .. 53754051

Gene Structure 5316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG362900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGATGTCACAAGATAATGTTTGGAGAATAATAGAAGAGCGAGAGAAACTGAATGACGAGTTGGATGCTACGAAAAACGAACTGGATTCCCTGAGAAAAGAATTAAACAATCGTGAAGCACCAACTGAATATGAGAGGCAAAAACTTGACAGGGATAAAAAGAAGAATGATGAGAGAAACAAGTTACTTCAATTGGCTTCTGTGGAGCAGAAAAAGGCGGACGAGAGTGTCTTGAGGTGGGTTGAAGAGCTAAAGAGGGAAAAAGAGGATGCCTTGTATAAAATAATTCAGGTAGAAAGGGAAATTGAAGAATTAAATGGTAAATTAGAGGTGATGAAGCATCTTCGGGATGAAGATGAAGAACCCGTTAAAAAGAAGATTGAAGACATGAATCAAGAATTGGGGGAAAAAGCTAAAGAGCTTGAGGATTTGGAAATGCTGAATCAAACTCTGATCACCAAAGAGCGCCAGAGCAATGATGAGTTACAAGAAGCTCGTAAAGTGTTAATAGCAGGTTTGCCTGAAATGTTGGCTGGTCAATCTCATATTCGGATTAAAAGAATTGGAGATTTGGATCAAAAGCCCTTCCTCGACACATGCAAGTTAAGATTTCCTCTCGAGGAAGCACAGGTTCAGGCCTTCACTTTATGCTCCCTGTGGCAGGAAAATCTGAAAGATCCAAATTGGCTTCCTTTCAAGGTGATAGAGAAAGATGGGAATCATGAGGAAATTATCGACGAGGAGGATGAGAAGCTACAAAATCTGAAGGAAGAGTGGGGAATTAAAATACATGACTGTGTTGTTACAGCTTTGAAAGAGCTTAATGAATACAACCCCAGTGGGAGATATGCTATTTCTGAGCTCTGGAACCAAAAAGAAGGAAGAAAAGCCACATTGAAGGAGGTATTTTCCTTTATCTTGAAGAATATTAAGATACGCAAGCGAAAGAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003725 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010468 GO:0010569 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

318

Amino Acids

37.83

Weight (kDa)

5.22

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	186 - 316	7.8e-55	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15910 AT4G00380 AT4G00380 AT4G00380
fragaria_vesca	FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780
malus_domestica	MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1
prunus_persica	Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621
rosa_laevigata	RLG00000019313 RLG00000019320
rosa_multiflora	Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111310 Rroxscaffold_2G00111340
rosa_rugosa	Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800
rosa_samantha	Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500
rosa_wichuraiana	Rw2G029490 Rw2G029510 Rw4G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	503
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	2 cut(s)	582, 671
AcuI	CTGAAG	1 cut(s)	785
AfiI	CCNNNNNNNGG	1 cut(s)	661
AgsI	TTSAA	8 cut(s)	191, 245, 308, 383, 697, 814, 898, 922
AjuI	GAANNNNNNNTTGG	4 cut(s)	44, 76, 383, 415
AluBI	AGCT	8 cut(s)	250, 413, 421, 494, 754, 809, 820, 862
AluI	AGCT	8 cut(s)	250, 413, 421, 494, 754, 809, 820, 862
Alw21I	GWGCWC	1 cut(s)	864
AlwI	GGATC	2 cut(s)	582, 671
Ama87I	CYCGRG	1 cut(s)	617
AoxI	GGCC	1 cut(s)	636
AspLEI	GCGC	1 cut(s)	468
AsuHPI	GGTGA	3 cut(s)	343, 448, 712
AvaI	CYCGRG	1 cut(s)	617
BanII	GRGCYC	1 cut(s)	864
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	864
BccI	CCATC	1 cut(s)	707
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BclI	TGATCA	1 cut(s)	453
BfoI	RGCGCY	1 cut(s)	469
BfuAI	ACCTGC	1 cut(s)	503
BmeT110I	CYCGRG	1 cut(s)	617
BmiI	GGNNCC	1 cut(s)	869
BmrI	ACTGGG	1 cut(s)	831
BmsI	GCATC	3 cut(s)	55, 259, 349
BmuI	ACTGGG	1 cut(s)	831
BpiI	GAAGAC	1 cut(s)	390
BpuEI	CTTGAG	2 cut(s)	253, 443
BsaBI	GATNNNNATC	2 cut(s)	573, 717
Bsc4I	CCNNNNNNNGG	1 cut(s)	661
Bse1I	ACTGG	2 cut(s)	87, 837
Bse3DI	GCAATG	1 cut(s)	481
Bse8I	GATNNNNATC	2 cut(s)	573, 717
BseGI	GGATG	4 cut(s)	70, 274, 355, 751
BseJI	GATNNNNATC	2 cut(s)	573, 717
BseLI	CCNNNNNNNGG	1 cut(s)	661
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	2 cut(s)	83, 849
BseNI	ACTGG	2 cut(s)	87, 837
BseRI	GAGGAG	1 cut(s)	755
BshFI	GGCC	1 cut(s)	638
BsiHKAI	GWGCWC	1 cut(s)	864
BsiHKCI	CYCGRG	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	661
BsnI	GGCC	1 cut(s)	638
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	864
Bsp143I	GATC	3 cut(s)	453, 574, 676
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	638
BspCNI	CTCAG	2 cut(s)	84, 850
BspHI	TCATGA	1 cut(s)	721
BspLI	GGNNCC	1 cut(s)	869
BspMI	ACCTGC	1 cut(s)	503
BspPI	GGATC	2 cut(s)	582, 671
BspQI	GCTCTTC	2 cut(s)	30, 240
BsrDI	GCAATG	1 cut(s)	481
BsrI	ACTGG	2 cut(s)	87, 837
BssMI	GATC	3 cut(s)	453, 574, 676
Bst4CI	ACNGT	1 cut(s)	797
Bst6I	CTCTTC	3 cut(s)	30, 240, 765
BstC8I	GCNNGC	1 cut(s)	941
BstDEI	CTNAG	2 cut(s)	92, 858
BstENI	CCTNNNNNAGG	1 cut(s)	659
BstF5I	GGATG	4 cut(s)	70, 274, 355, 751
BstH2I	RGCGCY	1 cut(s)	469
BstHHI	GCGC	1 cut(s)	468
BstKTI	GATC	3 cut(s)	456, 577, 679
BstMBI	GATC	3 cut(s)	453, 574, 676
BstNSI	RCATGY	1 cut(s)	600
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
BsuRI	GGCC	1 cut(s)	638
BtsCI	GGATG	4 cut(s)	70, 274, 355, 751
BtsIMutI	CAGTG	1 cut(s)	844
BveI	ACCTGC	1 cut(s)	503
Cac8I	GCNNGC	1 cut(s)	941
CciI	TCATGA	1 cut(s)	721
CfoI	GCGC	1 cut(s)	468
CspCI	CAANNNNNGTGG	2 cut(s)	820, 855
CviAII	CATG	5 cut(s)	388, 597, 722, 791, 954
DdeI	CTNAG	2 cut(s)	92, 858
DpnI	GATC	3 cut(s)	455, 576, 678
DpnII	GATC	3 cut(s)	453, 574, 676
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	3 cut(s)	30, 240, 765
EarI	CTCTTC	3 cut(s)	30, 240, 765
EciI	GGCGGA	1 cut(s)	233
Ecl136II	GAGCTC	1 cut(s)	862
Eco147I	AGGCCT	1 cut(s)	638
Eco24I	GRGCYC	1 cut(s)	864
Eco53kI	GAGCTC	1 cut(s)	862
Eco57I	CTGAAG	1 cut(s)	785
Eco88I	CYCGRG	1 cut(s)	617
EcoICRI	GAGCTC	1 cut(s)	862
EcoNI	CCTNNNNNAGG	1 cut(s)	659
EcoT38I	GRGCYC	1 cut(s)	864
FaeI	CATG	5 cut(s)	391, 600, 725, 794, 957
FatI	CATG	5 cut(s)	387, 596, 721, 790, 953
FbaI	TGATCA	1 cut(s)	453
FokI	GGATG	4 cut(s)	77, 281, 362, 758
FriOI	GRGCYC	1 cut(s)	864
GlaI	GCGC	1 cut(s)	467
HaeII	RGCGCY	1 cut(s)	469
HaeIII	GGCC	1 cut(s)	638
HhaI	GCGC	1 cut(s)	468
Hin1II	CATG	5 cut(s)	391, 600, 725, 794, 957
Hin6I	GCGC	1 cut(s)	466
HinP1I	GCGC	1 cut(s)	466
HinfI	GANTC	4 cut(s)	86, 391, 442, 718
HphI	GGTGA	3 cut(s)	343, 448, 712
Hpy188I	TCNGA	5 cut(s)	453, 552, 672, 765, 859
Hpy188III	TCNNGA	8 cut(s)	113, 232, 347, 395, 617, 722, 865, 919
Hpy99I	CGWCG	1 cut(s)	740
HpyAV	CCTTC	5 cut(s)	595, 649, 760, 872, 892
HpyCH4III	ACNGT	1 cut(s)	797
HpyCH4V	TGCA	1 cut(s)	600
HpyF3I	CTNAG	2 cut(s)	92, 858
Hsp92II	CATG	5 cut(s)	391, 600, 725, 794, 957
HspAI	GCGC	1 cut(s)	466
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	3 cut(s)	453, 574, 676
LguI	GCTCTTC	2 cut(s)	30, 240
LmnI	GCTCC	2 cut(s)	205, 656
LweI	GCATC	3 cut(s)	55, 259, 349
MaeIII	GTNAC	4 cut(s)	6, 183, 483, 802
MalI	GATC	3 cut(s)	455, 576, 678
MboI	GATC	3 cut(s)	453, 574, 676
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	1 cut(s)	864
MmeI	TCCRAC	1 cut(s)	42
MseI	TTAA	9 cut(s)	104, 314, 369, 506, 555, 605, 783, 822, 930
MslI	CAYNNNNRTG	1 cut(s)	795
MunI	CAATTG	1 cut(s)	191
NdeII	GATC	3 cut(s)	453, 574, 676
NlaIII	CATG	5 cut(s)	391, 600, 725, 794, 957
NlaIV	GGNNCC	1 cut(s)	869
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	600
PaeR7I	CTCGAG	1 cut(s)	617
PagI	TCATGA	1 cut(s)	721
PceI	AGGCCT	1 cut(s)	638
PciSI	GCTCTTC	2 cut(s)	30, 240
PfeI	GAWTC	4 cut(s)	86, 391, 442, 718
Psp124BI	GAGCTC	1 cut(s)	864
PspN4I	GGNNCC	1 cut(s)	869
PsuI	RGATCY	1 cut(s)	676
RseI	CAYNNNNRTG	1 cut(s)	795
SacI	GAGCTC	1 cut(s)	864
SapI	GCTCTTC	2 cut(s)	30, 240
SaqAI	TTAA	9 cut(s)	104, 314, 369, 506, 555, 605, 783, 822, 930
Sau3AI	GATC	3 cut(s)	453, 574, 676
SduI	GDGCHC	1 cut(s)	864
SfaNI	GCATC	3 cut(s)	55, 259, 349
Sfr274I	CTCGAG	1 cut(s)	617
SlaI	CTCGAG	1 cut(s)	617
SmiMI	CAYNNNNRTG	1 cut(s)	795
SmlI	CTYRAG	3 cut(s)	232, 422, 617
SmoI	CTYRAG	3 cut(s)	232, 422, 617
SseBI	AGGCCT	1 cut(s)	638
SsiI	CCGC	1 cut(s)	218
SspI	AATATT	1 cut(s)	928
SstI	GAGCTC	1 cut(s)	864
StuI	AGGCCT	1 cut(s)	638
TaaI	ACNGT	1 cut(s)	797
TaqI	TCGA	3 cut(s)	591, 618, 735
TfiI	GAWTC	4 cut(s)	86, 391, 442, 718
Tru1I	TTAA	9 cut(s)	104, 314, 369, 506, 555, 605, 783, 822, 930
Tru9I	TTAA	9 cut(s)	104, 314, 369, 506, 555, 605, 783, 822, 930
TscAI	CASTG	1 cut(s)	844
TseFI	GTSAC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	5 cut(s)	350, 366, 372, 404, 840
TspRI	CASTG	1 cut(s)	844
XagI	CCTNNNNNAGG	1 cut(s)	659
XceI	RCATGY	1 cut(s)	600
XhoI	CTCGAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.