Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002080

Physical Location & Seq

Genomic Coordinates Reverse (-)

49878131 .. 49883357

Gene Structure 5227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50436

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGATGTCACAAGATAATGTTTGGAGAATAATTGAAGTGCGAGAGAAACTGAATGACGATTTGGATGCTAAGAAAAAGGAACGGGATTCCCTGAGAAAAGAATTAAACAAACGTGAAGCAAAAACTGAATATGAGAGGCAAAAACTTGACAGGGATAAAAAGAAGAACGATGAGAGAAACAAGTTACTTCAATTGGCTTCTGTGGAGCAGAAAAAGGCGGATGAGAGTGTCTTGAGGTGGGTTGAAGAGCAAAAGAGGGAAAAAGAGGATGCCTTGCATAAAATACTTCAGTTAGAAAAGAAATTGAATGACAAACAGAAGGTAGAAATGGAAATTGAGGAATTAAATGGTAAATTAGAGGTGATGAAGCATCTTCGGGATGAAGCATTGGGGGAAAAAGCAAAAGAGCTTGAGGATTTGGAAATGCTGAATCAAACTCTGATCACAAAAGAGCGCCAGAACAATGATGAGTTACAAGAAGCTCGTAAATTGTTAATAGCAGGTTTGCCTGAAATGTTGGCTGGTCAATCTCATATTCGGATTAAAAGATTGGGATATTTGGATCAAAAGCCCTTCCTCGACACATGCAAGTTAAGATTTCCTCTCGAGGAAGCACAGGTTCAGGCCTTCACTTTATGCTCCCTGTGGCAGAAAAATCTGAAAGATCCAAATTGGCTTCCTTTCAAGGTGATACAGAAAGATGGGAATTATGAGGAAATTATCGACGAGGAGGATGAGAAGCTACAAAATCTGAAGGAAGAGTGGGGGTTTGAGATATATGATTGTGTTGTTACAGCTTTAAAAGAGCTTAATGAGTATAATCCAAGTGGGCGGTATGTTATTCCTGAGCTCTGGAACGTAAAAGAAGGAAGAAAAGCCACATTGAAGGAGGTTATTGCCTTTATCTTGAAGTATATTAAGACACTCAAGCGGAAGAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003725 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010468 GO:0010569 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

314

Amino Acids

37.49

Weight (kDa)

6.46

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	182 - 312	4.4e-56	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15910 AT4G00380 AT4G00380 AT4G00380
fragaria_vesca	FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780
malus_domestica	MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1
prunus_persica	Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621
rosa_laevigata	RLG00000019313 RLG00000019320
rosa_multiflora	Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111310 Rroxscaffold_2G00111340
rosa_rugosa	Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800
rosa_samantha	Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500
rosa_wichuraiana	Rw2G029490 Rw2G029510 Rw4G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	491
AciI	CCGC	3 cut(s)	218, 832, 931
AclWI	GGATC	2 cut(s)	570, 659
AcuI	CTGAAG	2 cut(s)	272, 773
AgsI	TTSAA	7 cut(s)	35, 191, 245, 307, 685, 886, 910
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	6 cut(s)	409, 482, 742, 797, 808, 850
AluI	AGCT	6 cut(s)	409, 482, 742, 797, 808, 850
Alw21I	GWGCWC	1 cut(s)	852
AlwI	GGATC	2 cut(s)	570, 659
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	456
AsuHPI	GGTGA	2 cut(s)	373, 700
AvaI	CYCGRG	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	852
Bbv12I	GWGCWC	1 cut(s)	852
BccI	CCATC	1 cut(s)	695
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BclI	TGATCA	1 cut(s)	441
BfoI	RGCGCY	1 cut(s)	457
BfuAI	ACCTGC	1 cut(s)	491
BmeT110I	CYCGRG	1 cut(s)	605
BmsI	GCATC	3 cut(s)	55, 259, 379
Bpu10I	CCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	3 cut(s)	253, 431, 911
BseGI	GGATG	5 cut(s)	70, 226, 274, 385, 739
BseMII	CTCAG	2 cut(s)	83, 837
BseRI	GAGGAG	1 cut(s)	743
BshFI	GGCC	1 cut(s)	626
BsiHKAI	GWGCWC	1 cut(s)	852
BsiHKCI	CYCGRG	1 cut(s)	605
BsnI	GGCC	1 cut(s)	626
BsoBI	CYCGRG	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	852
Bsp143I	GATC	3 cut(s)	441, 562, 664
BspACI	CCGC	3 cut(s)	218, 832, 931
BspANI	GGCC	1 cut(s)	626
BspCNI	CTCAG	2 cut(s)	84, 838
BspMI	ACCTGC	1 cut(s)	491
BspPI	GGATC	2 cut(s)	570, 659
BspQI	GCTCTTC	1 cut(s)	240
BssMI	GATC	3 cut(s)	441, 562, 664
Bst6I	CTCTTC	3 cut(s)	240, 753, 929
BstDEI	CTNAG	3 cut(s)	69, 92, 846
BstF5I	GGATG	5 cut(s)	70, 226, 274, 385, 739
BstH2I	RGCGCY	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	3 cut(s)	444, 565, 667
BstMBI	GATC	3 cut(s)	441, 562, 664
BstNSI	RCATGY	1 cut(s)	588
BstX2I	RGATCY	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	664
BsuRI	GGCC	1 cut(s)	626
BtsCI	GGATG	5 cut(s)	70, 226, 274, 385, 739
BveI	ACCTGC	1 cut(s)	491
CfoI	GCGC	1 cut(s)	456
CviAII	CATG	2 cut(s)	585, 942
DdeI	CTNAG	3 cut(s)	69, 92, 846
DpnI	GATC	3 cut(s)	443, 564, 666
DpnII	GATC	3 cut(s)	441, 562, 664
DraI	TTTAAA	1 cut(s)	801
Eam1104I	CTCTTC	3 cut(s)	240, 753, 929
EarI	CTCTTC	3 cut(s)	240, 753, 929
EciI	GGCGGA	1 cut(s)	233
Ecl136II	GAGCTC	1 cut(s)	850
Eco147I	AGGCCT	1 cut(s)	626
Eco24I	GRGCYC	1 cut(s)	852
Eco53kI	GAGCTC	1 cut(s)	850
Eco57I	CTGAAG	2 cut(s)	272, 773
Eco88I	CYCGRG	1 cut(s)	605
EcoICRI	GAGCTC	1 cut(s)	850
EcoT38I	GRGCYC	1 cut(s)	852
FaeI	CATG	2 cut(s)	588, 945
FatI	CATG	2 cut(s)	584, 941
FbaI	TGATCA	1 cut(s)	441
FokI	GGATG	5 cut(s)	77, 233, 281, 392, 746
FriOI	GRGCYC	1 cut(s)	852
GlaI	GCGC	1 cut(s)	455
HaeII	RGCGCY	1 cut(s)	457
HaeIII	GGCC	1 cut(s)	626
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	2 cut(s)	588, 945
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HinfI	GANTC	2 cut(s)	86, 430
HphI	GGTGA	2 cut(s)	373, 700
Hpy188I	TCNGA	4 cut(s)	441, 540, 660, 753
Hpy188III	TCNNGA	6 cut(s)	232, 377, 605, 845, 853, 907
Hpy99I	CGWCG	1 cut(s)	728
HpyAV	CCTTC	6 cut(s)	313, 583, 637, 748, 860, 880
HpyCH4IV	ACGT	2 cut(s)	112, 858
HpyCH4V	TGCA	2 cut(s)	277, 588
HpyF3I	CTNAG	3 cut(s)	69, 92, 846
HpySE526I	ACGT	2 cut(s)	112, 858
Hsp92II	CATG	2 cut(s)	588, 945
HspAI	GCGC	1 cut(s)	454
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	3 cut(s)	441, 562, 664
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	2 cut(s)	205, 644
LweI	GCATC	3 cut(s)	55, 259, 379
MaeII	ACGT	2 cut(s)	112, 858
MaeIII	GTNAC	4 cut(s)	6, 183, 471, 790
MalI	GATC	3 cut(s)	443, 564, 666
MboI	GATC	3 cut(s)	441, 562, 664
MboII	GAAGA	5 cut(s)	175, 257, 365, 770, 882
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	1 cut(s)	852
MseI	TTAA	8 cut(s)	104, 344, 494, 543, 593, 800, 810, 918
MunI	CAATTG	1 cut(s)	191
NdeII	GATC	3 cut(s)	441, 562, 664
NlaIII	CATG	2 cut(s)	588, 945
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	588
PaeR7I	CTCGAG	1 cut(s)	605
PceI	AGGCCT	1 cut(s)	626
PciSI	GCTCTTC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	86, 430
Psp124BI	GAGCTC	1 cut(s)	852
PsuI	RGATCY	1 cut(s)	664
SacI	GAGCTC	1 cut(s)	852
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	8 cut(s)	104, 344, 494, 543, 593, 800, 810, 918
Sau3AI	GATC	3 cut(s)	441, 562, 664
SduI	GDGCHC	1 cut(s)	852
SfaNI	GCATC	3 cut(s)	55, 259, 379
Sfr274I	CTCGAG	1 cut(s)	605
SlaI	CTCGAG	1 cut(s)	605
SmlI	CTYRAG	4 cut(s)	232, 410, 605, 926
SmoI	CTYRAG	4 cut(s)	232, 410, 605, 926
SseBI	AGGCCT	1 cut(s)	626
SsiI	CCGC	3 cut(s)	218, 832, 931
SstI	GAGCTC	1 cut(s)	852
StuI	AGGCCT	1 cut(s)	626
TaiI	ACGT	2 cut(s)	115, 861
TaqI	TCGA	3 cut(s)	579, 606, 723
TfiI	GAWTC	2 cut(s)	86, 430
Tru1I	TTAA	8 cut(s)	104, 344, 494, 543, 593, 800, 810, 918
Tru9I	TTAA	8 cut(s)	104, 344, 494, 543, 593, 800, 810, 918
TseFI	GTSAC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	2 cut(s)	380, 396
XceI	RCATGY	1 cut(s)	588
XhoI	CTCGAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.