Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002080

Physical Location & Seq

Genomic Coordinates Reverse (-)

47798613 .. 47803004

Gene Structure 4392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G029490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGATGTCACAAGATAATGTTTGGAGAATAATTGAAGAGCGAGAGAAACTGAATGACGAGTTGGATGCTAAGAAAAAGGAACTGGATTCCCTGAGAAAAGAATTAAACAAACGTGAAGCACCAACTGAATATGAGAGGCAAAAACTTGACAGGGATAAAAAGAAGAACGATGAGAGAAACAAGTTACACAAGTTACTTCAATTGGCTTCTGTGGAGCAGAAAAAGGCGGATGAGAGTGTCTTGAGGTGGGTTGAAGAGCAAAAGAGTGAAAAAGAGGATGCCTTGCATAAAATGCTTCAGTTAGAAAAGAAATTGAATGACAAACAGAAGGTAGAAATGGAAATTGAGGAATTAAATGGTAAATTAGAGGTGATGAAGCATCTTCGGGATGAAGCATTGGGGGAAAAAGCAAAAGAGCTTGAGGATTTGGAAATGCAGAATCAAACTCTGATCACCAAAGAGCGCCAGAGCAATGATGAGTTACAAGAAGCTCGTAAAGTGTTAATAGCAGGTTTGCCTGAAATGTTGGCTGGTCAATCTCATATTCGGATTAAAAGAATGGGAGATTTGGATCAAAAGCCCTTCCTCGACACATGCAAGTTAAGATTTCCTCTCGAGGAAGCACAGGTTCAGGCCTTCACTTTATGCTCCCTGTGGCAGGAAAATCTGAAAGATCCAAATTGGCTTCCTTTCAAGGTGATACAGAAAGATGGGAATCATGAGGAAATTATCGACGAGGAGGATGAGAAGCTACAAAATCTGAAGGAAGAGTGGGGAATTAAAATACATGACTGTGTTGTTACAGCTTTGAAAGAGCTTAATGAATACAACCCCAGTGGGAGATATGCTATTTCTGAGCTCTGGAACCAAAAAGAAGGAAGAAAAGCCACATTGAAGGGGGTACTTTCCTTTATCTTGAAGAATATTAAGATACGCAAGCGAAAGAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003725 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010468 GO:0010569 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

317

Amino Acids

37.59

Weight (kDa)

6.21

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	185 - 315	1.1e-54	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15910 AT4G00380 AT4G00380 AT4G00380
fragaria_vesca	FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780
malus_domestica	MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1
prunus_persica	Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621
rosa_laevigata	RLG00000019313 RLG00000019320
rosa_multiflora	Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111310 Rroxscaffold_2G00111340
rosa_rugosa	Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800
rosa_samantha	Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500
rosa_wichuraiana	Rw2G029490 Rw2G029510 Rw4G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	500
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	579, 668
AcuI	CTGAAG	2 cut(s)	281, 782
AfaI	GTAC	1 cut(s)	903
AfiI	CCNNNNNNNGG	1 cut(s)	658
AgsI	TTSAA	8 cut(s)	35, 200, 254, 316, 694, 811, 895, 919
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	6 cut(s)	418, 491, 751, 806, 817, 859
AluI	AGCT	6 cut(s)	418, 491, 751, 806, 817, 859
Alw21I	GWGCWC	1 cut(s)	861
AlwI	GGATC	2 cut(s)	579, 668
Ama87I	CYCGRG	1 cut(s)	614
AoxI	GGCC	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	465
AsuHPI	GGTGA	3 cut(s)	382, 445, 709
AvaI	CYCGRG	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	861
Bbv12I	GWGCWC	1 cut(s)	861
BccI	CCATC	1 cut(s)	704
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BclI	TGATCA	1 cut(s)	450
BfoI	RGCGCY	1 cut(s)	466
BfuAI	ACCTGC	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	614
BmiI	GGNNCC	1 cut(s)	866
BmrI	ACTGGG	1 cut(s)	828
BmsI	GCATC	3 cut(s)	55, 268, 388
BmuI	ACTGGG	1 cut(s)	828
BpuEI	CTTGAG	2 cut(s)	262, 440
BsaBI	GATNNNNATC	2 cut(s)	570, 714
Bsc4I	CCNNNNNNNGG	1 cut(s)	658
Bse1I	ACTGG	2 cut(s)	87, 834
Bse3DI	GCAATG	1 cut(s)	478
Bse8I	GATNNNNATC	2 cut(s)	570, 714
BseGI	GGATG	5 cut(s)	70, 235, 283, 394, 748
BseJI	GATNNNNATC	2 cut(s)	570, 714
BseLI	CCNNNNNNNGG	1 cut(s)	658
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	2 cut(s)	83, 846
BseNI	ACTGG	2 cut(s)	87, 834
BseRI	GAGGAG	1 cut(s)	752
BshFI	GGCC	1 cut(s)	635
BsiHKAI	GWGCWC	1 cut(s)	861
BsiHKCI	CYCGRG	1 cut(s)	614
BslI	CCNNNNNNNGG	1 cut(s)	658
BsnI	GGCC	1 cut(s)	635
BsoBI	CYCGRG	1 cut(s)	614
Bsp1286I	GDGCHC	1 cut(s)	861
Bsp143I	GATC	3 cut(s)	450, 571, 673
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	635
BspCNI	CTCAG	2 cut(s)	84, 847
BspHI	TCATGA	1 cut(s)	718
BspLI	GGNNCC	1 cut(s)	866
BspMI	ACCTGC	1 cut(s)	500
BspPI	GGATC	2 cut(s)	579, 668
BspQI	GCTCTTC	2 cut(s)	30, 249
BsrDI	GCAATG	1 cut(s)	478
BsrI	ACTGG	2 cut(s)	87, 834
BssMI	GATC	3 cut(s)	450, 571, 673
Bst4CI	ACNGT	1 cut(s)	794
Bst6I	CTCTTC	3 cut(s)	30, 249, 762
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	938
BstDEI	CTNAG	3 cut(s)	69, 92, 855
BstENI	CCTNNNNNAGG	1 cut(s)	656
BstF5I	GGATG	5 cut(s)	70, 235, 283, 394, 748
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	3 cut(s)	453, 574, 676
BstMBI	GATC	3 cut(s)	450, 571, 673
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNSI	RCATGY	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
BsuRI	GGCC	1 cut(s)	635
BtsCI	GGATG	5 cut(s)	70, 235, 283, 394, 748
BtsIMutI	CAGTG	1 cut(s)	841
BveI	ACCTGC	1 cut(s)	500
Cac8I	GCNNGC	1 cut(s)	938
CciI	TCATGA	1 cut(s)	718
CfoI	GCGC	1 cut(s)	465
Csp6I	GTAC	1 cut(s)	902
CspCI	CAANNNNNGTGG	2 cut(s)	817, 852
CviAII	CATG	4 cut(s)	594, 719, 788, 951
CviQI	GTAC	1 cut(s)	902
DdeI	CTNAG	3 cut(s)	69, 92, 855
DpnI	GATC	3 cut(s)	452, 573, 675
DpnII	GATC	3 cut(s)	450, 571, 673
Eam1104I	CTCTTC	3 cut(s)	30, 249, 762
EarI	CTCTTC	3 cut(s)	30, 249, 762
EciI	GGCGGA	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	859
Eco147I	AGGCCT	1 cut(s)	635
Eco24I	GRGCYC	1 cut(s)	861
Eco53kI	GAGCTC	1 cut(s)	859
Eco57I	CTGAAG	2 cut(s)	281, 782
Eco88I	CYCGRG	1 cut(s)	614
EcoICRI	GAGCTC	1 cut(s)	859
EcoNI	CCTNNNNNAGG	1 cut(s)	656
EcoT38I	GRGCYC	1 cut(s)	861
FaeI	CATG	4 cut(s)	597, 722, 791, 954
FaiI	YATR	9 cut(s)	132, 288, 543, 595, 646, 720, 789, 846, 952
FatI	CATG	4 cut(s)	593, 718, 787, 950
FbaI	TGATCA	1 cut(s)	450
FokI	GGATG	5 cut(s)	77, 242, 290, 401, 755
FriOI	GRGCYC	1 cut(s)	861
GlaI	GCGC	1 cut(s)	464
HaeII	RGCGCY	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	635
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	4 cut(s)	597, 722, 791, 954
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HinfI	GANTC	3 cut(s)	86, 439, 715
HphI	GGTGA	3 cut(s)	382, 445, 709
Hpy188I	TCNGA	5 cut(s)	450, 549, 669, 762, 856
Hpy188III	TCNNGA	6 cut(s)	241, 386, 614, 719, 862, 916
Hpy99I	CGWCG	1 cut(s)	737
HpyAV	CCTTC	6 cut(s)	322, 592, 646, 757, 869, 889
HpyCH4III	ACNGT	1 cut(s)	794
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	3 cut(s)	286, 436, 597
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	3 cut(s)	69, 92, 855
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	4 cut(s)	597, 722, 791, 954
HspAI	GCGC	1 cut(s)	463
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	3 cut(s)	450, 571, 673
LguI	GCTCTTC	2 cut(s)	30, 249
LmnI	GCTCC	2 cut(s)	214, 653
LweI	GCATC	3 cut(s)	55, 268, 388
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	5 cut(s)	6, 183, 192, 480, 799
MalI	GATC	3 cut(s)	452, 573, 675
MboI	GATC	3 cut(s)	450, 571, 673
MboII	GAAGA	7 cut(s)	47, 175, 266, 374, 779, 891, 931
MfeI	CAATTG	1 cut(s)	200
MflI	RGATCY	1 cut(s)	673
MhlI	GDGCHC	1 cut(s)	861
MmeI	TCCRAC	1 cut(s)	42
MseI	TTAA	8 cut(s)	104, 353, 503, 552, 602, 780, 819, 927
MslI	CAYNNNNRTG	1 cut(s)	792
MunI	CAATTG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	292
NdeII	GATC	3 cut(s)	450, 571, 673
NlaIII	CATG	4 cut(s)	597, 722, 791, 954
NlaIV	GGNNCC	1 cut(s)	866
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	597
PaeR7I	CTCGAG	1 cut(s)	614
PagI	TCATGA	1 cut(s)	718
PceI	AGGCCT	1 cut(s)	635
PciSI	GCTCTTC	2 cut(s)	30, 249
PfeI	GAWTC	3 cut(s)	86, 439, 715
Psp124BI	GAGCTC	1 cut(s)	861
PspN4I	GGNNCC	1 cut(s)	866
PsuI	RGATCY	1 cut(s)	673
RsaI	GTAC	1 cut(s)	903
RsaNI	GTAC	1 cut(s)	902
RseI	CAYNNNNRTG	1 cut(s)	792
SacI	GAGCTC	1 cut(s)	861
SapI	GCTCTTC	2 cut(s)	30, 249
SaqAI	TTAA	8 cut(s)	104, 353, 503, 552, 602, 780, 819, 927
Sau3AI	GATC	3 cut(s)	450, 571, 673
SduI	GDGCHC	1 cut(s)	861
SfaNI	GCATC	3 cut(s)	55, 268, 388
Sfr274I	CTCGAG	1 cut(s)	614
SlaI	CTCGAG	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	792
SmlI	CTYRAG	3 cut(s)	241, 419, 614
SmoI	CTYRAG	3 cut(s)	241, 419, 614
SseBI	AGGCCT	1 cut(s)	635
SsiI	CCGC	1 cut(s)	227
SspI	AATATT	1 cut(s)	925
SstI	GAGCTC	1 cut(s)	861
StuI	AGGCCT	1 cut(s)	635
TaaI	ACNGT	1 cut(s)	794
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	3 cut(s)	588, 615, 732
TfiI	GAWTC	3 cut(s)	86, 439, 715
Tru1I	TTAA	8 cut(s)	104, 353, 503, 552, 602, 780, 819, 927
Tru9I	TTAA	8 cut(s)	104, 353, 503, 552, 602, 780, 819, 927
TscAI	CASTG	1 cut(s)	841
TseFI	GTSAC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	3 cut(s)	389, 405, 837
TspRI	CASTG	1 cut(s)	841
XagI	CCTNNNNNAGG	1 cut(s)	656
XceI	RCATGY	1 cut(s)	597
XhoI	CTCGAG	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.