Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002080

Physical Location & Seq

Genomic Coordinates Reverse (-)

51419255 .. 51423924

Gene Structure 4670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG368400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGACGCTATGGACTATAGCTCTGATGAAGAATCAGATAACAATGAATCTGAGATCAGTGACTACAAAGACAAACCTTACGAGCAGTTACGAAGTGGAAAGTTGAAAGTAAAGGGTCCTAATGGCACCCTCAGATGCCCCTTTTGTGCTAGAAAGAAGAAACAAGATTATAAGCACAAGGATCTGCTTCAACATGCTTCCGGGGTGGCTAAAGGATATGGGTTTCATGGGTTTGATAATGCCTTTGTTGAAGAATCAAAGAGGCTGCAGATGATGTCACAAGATAATGTTTGGAGAATAATTGAAGTGCGAGAGAAACTGAATGACGATTTGGATGCTAAGAAAAAGGAACGGGATTCCCTGAGAAAAGAATTAAACAAACGTGAAGCAAAAACTGAATATGAGAGGCAAAAACTTGACAGGGATAAAAAGAAGAACGATGAGAGAAACAAGTTACTTCAATTGGCTTCTGTGGAGCAGAAAAAGGCGGATGAGAGTGTCTTGAGGTGGGTTGAAGAGCAAAAGAGGGAAAAAGAGGATGCCTTGCATAAAATACTTCAGTTAGAAAAGAAATTGAATGACAAACAGAAGGTAGAAATGGAAATTGAGGAATTAAATGGTAAATTAGAGGTGATGAAGCATCTTCGGGATGAAGCATTGGGGGAAAAAGCAAAAGAGCTTGAGGATTTGGAAATGCTGAATCAAACTCTGATCACAAAAGAGCGCCAGAACAATGATGAGTTACAAGAAGCTCGTAAATTGTTAATAGCAGGTTTGCCTGAAATGTTGGCTGGTCAATCTCATATTCGGATTAAAAGATTGGGATATTTGGATCAAAAGCCCTTCCTCGACACATGCAAGTTAAGATTTCCTCTCGAGGAAGCACAGGTTCAGGCCTTCACTTTATGCTCCCTGTGGCAGAAAAATCTGAAAGATCCAAATTGGCTTCCTTTCAAGGTGATACAGAAAGATGGGAATTATGAGGAAATTATCGACGAGGAGGATGAGAAGCTACAAAATCTGAAGGAAGAGTGGGGGTTTGAGATATATGATTGTGTTGTTACAGCTTTAAAAGAGCTTAATGAGTATAATCCAAGTGGGCGGTATGTTATTCCTGAGCTCTGGAACGTAAAAGAAGGAAGAAAAGCCACATTGAAGGAGGTTATTGCCTTTATCTTGAAGTATATTAAGACACTCAAGCGGAAGAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003725 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010468 GO:0010569 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

404

Amino Acids

47.78

Weight (kDa)

6.68

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-XS	PF03470	46 - 72	2.4e-11	XS zinc finger domain
XH	PF03469	272 - 402	7.5e-56	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15910 AT4G00380 AT4G00380 AT4G00380
fragaria_vesca	FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780
malus_domestica	MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1
prunus_persica	Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621
rosa_laevigata	RLG00000019313 RLG00000019320
rosa_multiflora	Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111310 Rroxscaffold_2G00111340
rosa_rugosa	Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800
rosa_samantha	Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500
rosa_wichuraiana	Rw2G029490 Rw2G029510 Rw4G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
Acc36I	ACCTGC	1 cut(s)	761
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	3 cut(s)	488, 1102, 1201
AclWI	GGATC	3 cut(s)	189, 840, 929
AcuI	CTGAAG	2 cut(s)	542, 1043
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	7 cut(s)	21, 679, 752, 1012, 1067, 1078, 1120
AluI	AGCT	7 cut(s)	21, 679, 752, 1012, 1067, 1078, 1120
Alw21I	GWGCWC	1 cut(s)	1122
AlwI	GGATC	3 cut(s)	189, 840, 929
Ama87I	CYCGRG	1 cut(s)	875
AoxI	GGCC	1 cut(s)	894
ApeKI	GCWGC	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	643, 970
AvaI	CYCGRG	1 cut(s)	875
AvaII	GGWCC	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	1122
Bbv12I	GWGCWC	1 cut(s)	1122
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	1 cut(s)	965
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BclI	TGATCA	1 cut(s)	711
BcnI	CCSGG	1 cut(s)	202
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	2 cut(s)	16, 266
BfoI	RGCGCY	1 cut(s)	727
BfuAI	ACCTGC	1 cut(s)	761
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	116
BmeT110I	CYCGRG	1 cut(s)	875
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	2 cut(s)	117, 127
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	4 cut(s)	125, 325, 529, 649
Bpu10I	CCTNAGC	1 cut(s)	1116
BpuEI	CTTGAG	3 cut(s)	523, 701, 1181
BpuMI	CCSGG	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	5 cut(s)	340, 496, 544, 655, 1009
BseMII	CTCAG	4 cut(s)	42, 145, 353, 1107
BseRI	GAGGAG	1 cut(s)	1013
BseXI	GCAGC	1 cut(s)	252
BshFI	GGCC	1 cut(s)	896
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	1122
BsiHKCI	CYCGRG	1 cut(s)	875
BsiSI	CCGG	1 cut(s)	201
BsnI	GGCC	1 cut(s)	896
BsoBI	CYCGRG	1 cut(s)	875
Bsp1286I	GDGCHC	1 cut(s)	1122
Bsp143I	GATC	5 cut(s)	54, 181, 711, 832, 934
BspACI	CCGC	3 cut(s)	488, 1102, 1201
BspANI	GGCC	1 cut(s)	896
BspCNI	CTCAG	4 cut(s)	43, 144, 354, 1108
BspLI	GGNNCC	2 cut(s)	117, 127
BspMAI	CTGCAG	1 cut(s)	270
BspMI	ACCTGC	1 cut(s)	761
BspPI	GGATC	3 cut(s)	189, 840, 929
BspQI	GCTCTTC	1 cut(s)	510
BspT107I	GGYRCC	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	5 cut(s)	54, 181, 711, 832, 934
Bst6I	CTCTTC	3 cut(s)	510, 1023, 1199
BstDEI	CTNAG	5 cut(s)	51, 131, 339, 362, 1116
BstF5I	GGATG	5 cut(s)	340, 496, 544, 655, 1009
BstH2I	RGCGCY	1 cut(s)	727
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	5 cut(s)	57, 184, 714, 835, 937
BstMBI	GATC	5 cut(s)	54, 181, 711, 832, 934
BstNSI	RCATGY	2 cut(s)	197, 858
BstSCI	CCNGG	1 cut(s)	200
BstSFI	CTRYAG	2 cut(s)	16, 266
BstV1I	GCAGC	1 cut(s)	252
BstX2I	RGATCY	2 cut(s)	181, 934
BstYI	RGATCY	2 cut(s)	181, 934
BsuRI	GGCC	1 cut(s)	896
BtsCI	GGATG	5 cut(s)	340, 496, 544, 655, 1009
BtsIMutI	CAGTG	1 cut(s)	64
BveI	ACCTGC	1 cut(s)	761
CfoI	GCGC	1 cut(s)	726
Cfr13I	GGNCC	1 cut(s)	116
CseI	GACGC	1 cut(s)	14
CviAII	CATG	4 cut(s)	194, 227, 855, 1212
DdeI	CTNAG	5 cut(s)	51, 131, 339, 362, 1116
DpnI	GATC	5 cut(s)	56, 183, 713, 834, 936
DpnII	GATC	5 cut(s)	54, 181, 711, 832, 934
DraI	TTTAAA	1 cut(s)	1071
Eam1104I	CTCTTC	3 cut(s)	510, 1023, 1199
EarI	CTCTTC	3 cut(s)	510, 1023, 1199
EciI	GGCGGA	1 cut(s)	503
Ecl136II	GAGCTC	1 cut(s)	1120
Eco147I	AGGCCT	1 cut(s)	896
Eco24I	GRGCYC	1 cut(s)	1122
Eco47I	GGWCC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	1120
Eco57I	CTGAAG	2 cut(s)	542, 1043
Eco88I	CYCGRG	1 cut(s)	875
EcoICRI	GAGCTC	1 cut(s)	1120
EcoO109I	RGGNCCY	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	1122
FaeI	CATG	4 cut(s)	197, 230, 858, 1215
FatI	CATG	4 cut(s)	193, 226, 854, 1211
FbaI	TGATCA	1 cut(s)	711
Fnu4HI	GCNGC	1 cut(s)	266
FokI	GGATG	5 cut(s)	347, 503, 551, 662, 1016
FriOI	GRGCYC	1 cut(s)	1122
Fsp4HI	GCNGC	1 cut(s)	266
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	727
HaeIII	GGCC	1 cut(s)	896
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	726
Hin1II	CATG	4 cut(s)	197, 230, 858, 1215
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HinfI	GANTC	5 cut(s)	32, 47, 254, 356, 700
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	2 cut(s)	643, 970
Hpy188I	TCNGA	8 cut(s)	25, 37, 52, 134, 711, 810, 930, 1023
Hpy188III	TCNNGA	6 cut(s)	502, 647, 875, 1115, 1123, 1177
Hpy99I	CGWCG	1 cut(s)	998
HpyAV	CCTTC	6 cut(s)	583, 853, 907, 1018, 1130, 1150
HpyCH4IV	ACGT	2 cut(s)	382, 1128
HpyCH4V	TGCA	3 cut(s)	268, 547, 858
HpyF3I	CTNAG	5 cut(s)	51, 131, 339, 362, 1116
HpySE526I	ACGT	2 cut(s)	382, 1128
Hsp92II	CATG	4 cut(s)	197, 230, 858, 1215
HspAI	GCGC	1 cut(s)	724
Ksp22I	TGATCA	1 cut(s)	711
Kzo9I	GATC	5 cut(s)	54, 181, 711, 832, 934
LguI	GCTCTTC	1 cut(s)	510
LmnI	GCTCC	2 cut(s)	475, 914
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	4 cut(s)	125, 325, 529, 649
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	2 cut(s)	382, 1128
MaeIII	GTNAC	6 cut(s)	59, 87, 276, 453, 741, 1060
MalI	GATC	5 cut(s)	56, 183, 713, 834, 936
MboI	GATC	5 cut(s)	54, 181, 711, 832, 934
MboII	GAAGA	8 cut(s)	41, 169, 263, 445, 527, 635, 1040, 1152
MfeI	CAATTG	1 cut(s)	461
MflI	RGATCY	2 cut(s)	181, 934
MhlI	GDGCHC	1 cut(s)	1122
MseI	TTAA	8 cut(s)	374, 614, 764, 813, 863, 1070, 1080, 1188
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	202
MunI	CAATTG	1 cut(s)	461
NciI	CCSGG	1 cut(s)	202
NdeII	GATC	5 cut(s)	54, 181, 711, 832, 934
NlaIII	CATG	4 cut(s)	197, 230, 858, 1215
NlaIV	GGNNCC	2 cut(s)	117, 127
NmuCI	GTSAC	2 cut(s)	59, 276
NspI	RCATGY	2 cut(s)	197, 858
PaeR7I	CTCGAG	1 cut(s)	875
PceI	AGGCCT	1 cut(s)	896
PciSI	GCTCTTC	1 cut(s)	510
PfeI	GAWTC	5 cut(s)	32, 47, 254, 356, 700
PkrI	GCNGC	1 cut(s)	267
PpuMI	RGGWCCY	1 cut(s)	116
PsiI	TTATAA	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	1122
Psp5II	RGGWCCY	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	117, 127
PspPI	GGNCC	1 cut(s)	116
PspPPI	RGGWCCY	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	270
PsuI	RGATCY	2 cut(s)	181, 934
SacI	GAGCTC	1 cut(s)	1122
SapI	GCTCTTC	1 cut(s)	510
SaqAI	TTAA	8 cut(s)	374, 614, 764, 813, 863, 1070, 1080, 1188
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	5 cut(s)	54, 181, 711, 832, 934
Sau96I	GGNCC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	1122
SfaNI	GCATC	4 cut(s)	125, 325, 529, 649
SfcI	CTRYAG	2 cut(s)	16, 266
Sfr274I	CTCGAG	1 cut(s)	875
SinI	GGWCC	1 cut(s)	116
SlaI	CTCGAG	1 cut(s)	875
SmlI	CTYRAG	4 cut(s)	502, 680, 875, 1196
SmoI	CTYRAG	4 cut(s)	502, 680, 875, 1196
SseBI	AGGCCT	1 cut(s)	896
SsiI	CCGC	3 cut(s)	488, 1102, 1201
SspMI	CTAG	1 cut(s)	150
SstI	GAGCTC	1 cut(s)	1122
StuI	AGGCCT	1 cut(s)	896
StyD4I	CCNGG	1 cut(s)	200
TaiI	ACGT	2 cut(s)	385, 1131
TaqI	TCGA	3 cut(s)	849, 876, 993
TfiI	GAWTC	5 cut(s)	32, 47, 254, 356, 700
Tru1I	TTAA	8 cut(s)	374, 614, 764, 813, 863, 1070, 1080, 1188
Tru9I	TTAA	8 cut(s)	374, 614, 764, 813, 863, 1070, 1080, 1188
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	2 cut(s)	59, 276
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	2 cut(s)	59, 276
TspDTI	ATGAA	5 cut(s)	42, 60, 215, 650, 666
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	116
XceI	RCATGY	2 cut(s)	197, 858
XhoI	CTCGAG	1 cut(s)	875
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.