Rorug02G0310700

XH domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
35728037 .. 35729740
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0310700.1

Sequence Viewer

Length: 1704 bp
ATGTCGTTTCAGCGTAAGCGTATGAAGAATGGAGGCGATATCAGCACCGATTTGGAGGCTCTTCGAATGGAAGATCTGGATTCCTCTGTGCAGACACCTCCTTCTCTGCAGCATCAGACGACTTATGCCAGCACACTCAAAAATCCGGTGGATCGCTACAGGAAAACCATGCTGGAGGACTTTGAGTTTACTGACGATGATTGCTCTTACTCTCAAGGTAAACATGGCCAGAATGTCTCATTCTCTGAAAAAGTCCATAATAAGCTTGATTATGAATGGCGTTGTGCTGTGGTTGTGAAACTCATGGGTAAGCCTAACTCCACCAATTCTTTTGAGTTTATGCTGAGAGGATTACGAAGGAAGTGGCAAGTAAAAGGAGGTTGGCAACTCATTGACCTTCCTAATGATTTTTTCATTGTCAAATTCAATTTAGAAGAAGATATGAACTATGCCTTGTGTGGGGGTCCTTGGATTTTGGTTGGGCAGACTTTGATTGTGAAAAAATGGAGGCCTGACTTTGATCCTATGAATGAGTTTATTGGGAAAATGGCTTTATGGGTCAGAATTTTCGGGTTGCCTGTCAAGTACTTTAAGGAATTTACTGTGGCCAAAATTGGGAAGATCCTTGGTGATGTTGTGAAGGTTGACAAGCTTACTATTGGACAATCTAGAGGACAATTTGCCCGTGTTTGTATTGAAATTGATTTAAGCAAGCCTCTGCGCCCATATGTTGAAGTTGAATCTGCTGCATATAATGTTGTGTATGAAGGCATCTCCTTAATTTGCTTTGAATGTGGTTGCTTTGGTCACTCCAAAGATAAATGTCCTACACTCAAGTCTACTGCAGGTGCTAATGTTACCCAACAAGATATCAATAGTGCTACTGCTCTCCTCCATGCTAATGACTCTGATGGTGTAATCCTTGCTGATGTGAATATGGCCAATGGGCAGAATGAGCTAATCCATCCTCCTTCTTGTGATGTGATTAAGGAAGATATGGGTCCTTGGATGCTTATGAGCTACAGGAACAAGAAGAAAAATAGTGATTCTGGTGCTGCCAAAAAGTCTGGAAATTCTGGGTCTAGATTTTCGGTTTTGCAGGATGAGGGTGGCATGGATTCTGAAATGCCTGAGAAGACTGTTGAGGACAATCCTGCTGCAACCACACCTTCTATTGTTAAGCGTTGGCAGAGTTTCCAAGAGAAGAAGAAAGTTGCCCCTGTGTCCACTAAAGCTAAATCTGCTACTGCCTCTAATGCCACTTTGAAGAACTCTGAACTGTCTGGTACGCTCTCCCCTACTAAGCTTGCATCTGGTTTTTCTAACAATTCTAATGTGAAAAGTAAAAACCTCTCTAGAATTCCTATGAAAGATGTTTCAAATATTGGAAGTTGTAGTGGATCTAAAGTTGACATGCATTACCAAAGAAAATCTAAAGGGCATTGCCCTTCTGTCACTAAACATCAGACTAATGTTTTCAAGAAACTCTCATTTGAAAATATGGGGTCTAATGCTCTTGGTGATGGGATCTCTGCCATATTTGGCCATTGTCCACCTGAGGAGACCGTATCAAAGGACGACTTGCTGTTATCCACTGATAAGGATTCCGATAAATTTGTGGAGAAAACTTTTGCTGATAATAGCATGTTGACAATTGAGGACAACCTGCCTTCCCATGATGGGGAGGGAATGGTTGATGCTTAA

Protein Analysis

567

Amino Acids

62.89

Weight (kDa)

7.51

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 92 - 176 7.2e-14 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 836
Acc36I ACCTGC 2 cut(s) 836, 1674
AccI GTMKAC 1 cut(s) 839
AclWI GGATC 5 cut(s) 159, 515, 616, 1408, 1535
AcoI YGGCCR 4 cut(s) 226, 606, 939, 1543
AcsI RAATTY 6 cut(s) 422, 564, 596, 1072, 1359, 1613
AfaI GTAC 2 cut(s) 587, 1288
AfiI CCNNNNNNNGG 4 cut(s) 459, 615, 1680, 1681
AgsI TTSAA 9 cut(s) 427, 698, 734, 740, 791, 1267, 1380, 1480, 1496
AluBI AGCT 6 cut(s) 265, 652, 958, 1020, 1235, 1306
AluI AGCT 6 cut(s) 265, 652, 958, 1020, 1235, 1306
Alw26I GTCTC 2 cut(s) 241, 1556
AlwI GGATC 5 cut(s) 159, 515, 616, 1408, 1535
AoxI GGCC 5 cut(s) 226, 509, 606, 939, 1543
ApeKI GCWGC 4 cut(s) 109, 746, 1055, 1157
ApoI RAATTY 6 cut(s) 422, 564, 596, 1072, 1359, 1613
AspLEI GCGC 1 cut(s) 723
AspS9I GGNCC 2 cut(s) 464, 1001
AsuHPI GGTGA 2 cut(s) 641, 1532
AsuII TTCGAA 1 cut(s) 64
AvaII GGWCC 2 cut(s) 464, 1001
AxyI CCTNAGG 1 cut(s) 1557
BalI TGGCCA 4 cut(s) 228, 608, 941, 1545
BbsI GAAGAC 1 cut(s) 1142
BbvI GCAGC 4 cut(s) 121, 733, 1042, 1144
BccI CCATC 4 cut(s) 905, 972, 1517, 1673
BcoDI GTCTC 2 cut(s) 241, 1556
BfaI CTAG 3 cut(s) 669, 1083, 1356
BfmI CTRYAG 4 cut(s) 107, 157, 843, 1021
BfuAI ACCTGC 2 cut(s) 836, 1674
BglII AGATCT 1 cut(s) 73
BisI GCNGC 4 cut(s) 110, 747, 1056, 1158
BlsI GCNGC 4 cut(s) 111, 748, 1057, 1159
BmcAI AGTACT 1 cut(s) 587
Bme18I GGWCC 2 cut(s) 464, 1001
BmgT120I GGNCC 2 cut(s) 464, 1001
BmiI GGNNCC 2 cut(s) 465, 1002
BmsI GCATC 5 cut(s) 121, 780, 999, 1319, 1687
BpiI GAAGAC 1 cut(s) 1142
BpmI CTGGAG 1 cut(s) 194
Bpu14I TTCGAA 1 cut(s) 64
BpuEI CTTGAG 2 cut(s) 198, 818
BsaI GGTCTC 1 cut(s) 1556
BsaJI CCNNGG 3 cut(s) 467, 625, 1004
BsaWI WCCGGW 1 cut(s) 145
Bsc4I CCNNNNNNNGG 4 cut(s) 459, 615, 1680, 1681
Bse21I CCTNAGG 1 cut(s) 1557
Bse3DI GCAATG 1 cut(s) 1441
BseDI CCNNGG 3 cut(s) 467, 625, 1004
BseGI GGATG 3 cut(s) 964, 1014, 1108
BseLI CCNNNNNNNGG 4 cut(s) 459, 615, 1680, 1681
BseMI GCAATG 1 cut(s) 1441
BseMII CTCAG 3 cut(s) 335, 1122, 1548
BseRI GAGGAG 2 cut(s) 881, 1574
BseXI GCAGC 4 cut(s) 121, 733, 1042, 1144
BsgI GTGCAG 1 cut(s) 110
BshFI GGCC 5 cut(s) 228, 511, 608, 941, 1545
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 4 cut(s) 459, 615, 1680, 1681
BsmAI GTCTC 2 cut(s) 241, 1556
BsnI GGCC 5 cut(s) 228, 511, 608, 941, 1545
Bso31I GGTCTC 1 cut(s) 1556
Bsp119I TTCGAA 1 cut(s) 64
Bsp143I GATC 6 cut(s) 73, 151, 520, 621, 1400, 1527
BspANI GGCC 5 cut(s) 228, 511, 608, 941, 1545
BspCNI CTCAG 3 cut(s) 336, 1123, 1549
BspLI GGNNCC 2 cut(s) 465, 1002
BspMAI CTGCAG 2 cut(s) 111, 847
BspMI ACCTGC 2 cut(s) 836, 1674
BspPI GGATC 5 cut(s) 159, 515, 616, 1408, 1535
BspQI GCTCTTC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 1556
BsrDI GCAATG 1 cut(s) 1441
BssECI CCNNGG 3 cut(s) 467, 625, 1004
BssMI GATC 6 cut(s) 73, 151, 520, 621, 1400, 1527
BssT1I CCWWGG 3 cut(s) 467, 625, 1004
Bst4CI ACNGT 4 cut(s) 604, 1141, 1281, 1567
Bst6I CTCTTC 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 64
BstC8I GCNNGC 3 cut(s) 130, 713, 1308
BstDEI CTNAG 4 cut(s) 344, 1131, 1302, 1557
BstF5I GGATG 3 cut(s) 964, 1014, 1108
BstHHI GCGC 1 cut(s) 723
BstKTI GATC 6 cut(s) 76, 154, 523, 624, 1403, 1530
BstMAI GTCTC 2 cut(s) 241, 1556
BstMBI GATC 6 cut(s) 73, 151, 520, 621, 1400, 1527
BstMWI GCNNNNNNNGC 4 cut(s) 42, 955, 1241, 1256
BstNSI RCATGY 2 cut(s) 1417, 1648
BstSFI CTRYAG 4 cut(s) 107, 157, 843, 1021
BstV1I GCAGC 4 cut(s) 121, 733, 1042, 1144
BstV2I GAAGAC 1 cut(s) 1142
BstX2I RGATCY 4 cut(s) 73, 621, 1400, 1527
BstYI RGATCY 4 cut(s) 73, 621, 1400, 1527
Bsu36I CCTNAGG 1 cut(s) 1557
BsuRI GGCC 5 cut(s) 228, 511, 608, 941, 1545
BtsCI GGATG 3 cut(s) 964, 1014, 1108
BtsIMutI CAGTG 1 cut(s) 1593
BveI ACCTGC 2 cut(s) 836, 1674
Cac8I GCNNGC 3 cut(s) 130, 713, 1308
CfoI GCGC 1 cut(s) 723
Cfr13I GGNCC 2 cut(s) 464, 1001
Csp6I GTAC 2 cut(s) 586, 1287
CviAII CATG 8 cut(s) 169, 224, 304, 896, 1114, 1414, 1645, 1676
CviQI GTAC 2 cut(s) 586, 1287
DdeI CTNAG 4 cut(s) 344, 1131, 1302, 1557
DpnI GATC 6 cut(s) 75, 153, 522, 623, 1402, 1529
DpnII GATC 6 cut(s) 73, 151, 520, 621, 1400, 1527
EaeI YGGCCR 4 cut(s) 226, 606, 939, 1543
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 3 cut(s) 467, 625, 1004
Eco147I AGGCCT 1 cut(s) 511
Eco31I GGTCTC 1 cut(s) 1556
Eco32I GATATC 2 cut(s) 40, 871
Eco47I GGWCC 2 cut(s) 464, 1001
Eco81I CCTNAGG 1 cut(s) 1557
EcoO109I RGGNCCY 2 cut(s) 464, 1001
EcoRI GAATTC 1 cut(s) 1359
EcoRV GATATC 2 cut(s) 40, 871
EcoT14I CCWWGG 3 cut(s) 467, 625, 1004
EcoT22I ATGCAT 1 cut(s) 1419
ErhI CCWWGG 3 cut(s) 467, 625, 1004
FaeI CATG 8 cut(s) 172, 227, 307, 899, 1117, 1417, 1648, 1679
FalI AAGNNNNNCTT 2 cut(s) 1565, 1597
FatI CATG 8 cut(s) 168, 223, 303, 895, 1113, 1413, 1644, 1675
FauNDI CATATG 1 cut(s) 727
FblI GTMKAC 1 cut(s) 839
Fnu4HI GCNGC 4 cut(s) 110, 747, 1056, 1158
FokI GGATG 3 cut(s) 951, 1021, 1115
Fsp4HI GCNGC 4 cut(s) 110, 747, 1056, 1158
FspBI CTAG 3 cut(s) 669, 1083, 1356
GlaI GCGC 1 cut(s) 722
GluI GCNGC 4 cut(s) 110, 747, 1056, 1158
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 5 cut(s) 228, 511, 608, 941, 1545
HapII CCGG 1 cut(s) 146
HhaI GCGC 1 cut(s) 723
Hin1II CATG 8 cut(s) 172, 227, 307, 899, 1117, 1417, 1648, 1679
Hin6I GCGC 1 cut(s) 721
HinP1I GCGC 1 cut(s) 721
HincII GTYRAC 3 cut(s) 646, 1411, 1650
HindII GTYRAC 3 cut(s) 646, 1411, 1650
HindIII AAGCTT 3 cut(s) 263, 650, 1304
HinfI GANTC 6 cut(s) 80, 740, 905, 1046, 1118, 1604
HpaII CCGG 1 cut(s) 146
HphI GGTGA 2 cut(s) 641, 1532
Hpy166II GTNNAC 8 cut(s) 189, 221, 646, 840, 1227, 1411, 1553, 1650
Hpy188I TCNGA 8 cut(s) 117, 247, 563, 910, 1123, 1276, 1467, 1609
Hpy188III TCNNGA 6 cut(s) 77, 669, 1068, 1083, 1356, 1480
Hpy8I GTNNAC 8 cut(s) 189, 221, 646, 840, 1227, 1411, 1553, 1650
HpyAV CCTTC 9 cut(s) 111, 351, 407, 634, 761, 981, 1179, 1458, 1680
HpyCH4III ACNGT 4 cut(s) 604, 1141, 1281, 1567
HpyCH4V TGCA 8 cut(s) 91, 109, 749, 845, 1099, 1160, 1310, 1417
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 955, 1241, 1256
HpyF3I CTNAG 4 cut(s) 344, 1131, 1302, 1557
Hsp92II CATG 8 cut(s) 172, 227, 307, 899, 1117, 1417, 1648, 1679
HspAI GCGC 1 cut(s) 721
Kzo9I GATC 6 cut(s) 73, 151, 520, 621, 1400, 1527
LguI GCTCTTC 1 cut(s) 66
Lsp1109I GCAGC 4 cut(s) 121, 733, 1042, 1144
LweI GCATC 5 cut(s) 121, 780, 999, 1319, 1687
MaeI CTAG 3 cut(s) 669, 1083, 1356
MaeIII GTNAC 3 cut(s) 806, 856, 1453
MalI GATC 6 cut(s) 75, 153, 522, 623, 1402, 1529
MboI GATC 6 cut(s) 73, 151, 520, 621, 1400, 1527
MfeI CAATTG 1 cut(s) 1653
MflI RGATCY 4 cut(s) 73, 621, 1400, 1527
MlsI TGGCCA 4 cut(s) 228, 608, 941, 1545
MluNI TGGCCA 4 cut(s) 228, 608, 941, 1545
MlyI GAGTC 1 cut(s) 899
Mox20I TGGCCA 4 cut(s) 228, 608, 941, 1545
Mph1103I ATGCAT 1 cut(s) 1419
MscI TGGCCA 4 cut(s) 228, 608, 941, 1545
MseI TTAA 6 cut(s) 591, 707, 779, 987, 1179, 1702
MslI CAYNNNNRTG 1 cut(s) 900
Msp20I TGGCCA 4 cut(s) 228, 608, 941, 1545
MspI CCGG 1 cut(s) 146
MunI CAATTG 1 cut(s) 1653
MwoI GCNNNNNNNGC 4 cut(s) 42, 955, 1241, 1256
NdeI CATATG 1 cut(s) 727
NdeII GATC 6 cut(s) 73, 151, 520, 621, 1400, 1527
NlaIII CATG 8 cut(s) 172, 227, 307, 899, 1117, 1417, 1648, 1679
NlaIV GGNNCC 2 cut(s) 465, 1002
NmuCI GTSAC 2 cut(s) 806, 1453
NsiI ATGCAT 1 cut(s) 1419
NspI RCATGY 2 cut(s) 1417, 1648
NspV TTCGAA 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 836
PceI AGGCCT 1 cut(s) 511
PciSI GCTCTTC 1 cut(s) 66
PfeI GAWTC 5 cut(s) 80, 740, 1046, 1118, 1604
PkrI GCNGC 4 cut(s) 111, 748, 1057, 1159
PleI GAGTC 1 cut(s) 899
PpsI GAGTC 1 cut(s) 899
PpuMI RGGWCCY 2 cut(s) 464, 1001
Psp5II RGGWCCY 2 cut(s) 464, 1001
PspN4I GGNNCC 2 cut(s) 465, 1002
PspPI GGNCC 2 cut(s) 464, 1001
PspPPI RGGWCCY 2 cut(s) 464, 1001
PstI CTGCAG 2 cut(s) 111, 847
PsuI RGATCY 4 cut(s) 73, 621, 1400, 1527
RsaI GTAC 2 cut(s) 587, 1288
RsaNI GTAC 2 cut(s) 586, 1287
RseI CAYNNNNRTG 1 cut(s) 900
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 6 cut(s) 591, 707, 779, 987, 1179, 1702
SatI GCNGC 4 cut(s) 110, 747, 1056, 1158
Sau3AI GATC 6 cut(s) 73, 151, 520, 621, 1400, 1527
Sau96I GGNCC 2 cut(s) 464, 1001
ScaI AGTACT 1 cut(s) 587
SchI GAGTC 1 cut(s) 899
SfaNI GCATC 5 cut(s) 121, 780, 999, 1319, 1687
SfcI CTRYAG 4 cut(s) 107, 157, 843, 1021
SfuI TTCGAA 1 cut(s) 64
SinI GGWCC 2 cut(s) 464, 1001
SmiMI CAYNNNNRTG 1 cut(s) 900
SmlI CTYRAG 2 cut(s) 213, 833
SmoI CTYRAG 2 cut(s) 213, 833
SseBI AGGCCT 1 cut(s) 511
SspI AATATT 1 cut(s) 1384
SspMI CTAG 3 cut(s) 669, 1083, 1356
StuI AGGCCT 1 cut(s) 511
StyI CCWWGG 3 cut(s) 467, 625, 1004
TaaI ACNGT 4 cut(s) 604, 1141, 1281, 1567
TaqI TCGA 1 cut(s) 64
TatI WGTACW 1 cut(s) 585
TfiI GAWTC 5 cut(s) 80, 740, 1046, 1118, 1604
Tru1I TTAA 6 cut(s) 591, 707, 779, 987, 1179, 1702
Tru9I TTAA 6 cut(s) 591, 707, 779, 987, 1179, 1702
TscAI CASTG 1 cut(s) 1600
TseFI GTSAC 2 cut(s) 806, 1453
TseI GCWGC 4 cut(s) 109, 746, 1055, 1157
Tsp45I GTSAC 2 cut(s) 806, 1453
TspDTI ATGAA 7 cut(s) 38, 288, 403, 458, 542, 780, 1382
TspRI CASTG 1 cut(s) 1600
VpaK11BI GGWCC 2 cut(s) 464, 1001
XapI RAATTY 6 cut(s) 422, 564, 596, 1072, 1359, 1613
XbaI TCTAGA 3 cut(s) 668, 1082, 1355
XceI RCATGY 2 cut(s) 1417, 1648
XmiI GTMKAC 1 cut(s) 839
XspI CTAG 3 cut(s) 669, 1083, 1356
ZrmI AGTACT 1 cut(s) 587
Zsp2I ATGCAT 1 cut(s) 1419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.