Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001962.1

Orthogroup ID

OG0002080

Physical Location & Seq

Genomic Coordinates Reverse (-)

167445 .. 172975

Gene Structure 5531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001962.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atggccagcaagatcggactctgtgactcgactcgttctccaactcattccaggggatctcgagtatctcgtcatcgccgtcgaagacctcgacatgcagcaatagattcatttcatccgagcgatgagagaaacaagttacttcaattggcttttgtggagcagaaaaaggcggatgagagtgtcttgaggctggttgaagagcaaaagttagaaaagaaattgaatgacaaacagaaggtagaaatggaaattgaagaattaaatggtaaattagaggtgatgaagcatcttggggatgaagatgatgaaggcgttaaaaagaagattgaagacatgaatcaagaattgggggaaaaagttaaagagcttgagcatttggaaatacttaatcaaactctgatcaccaaagagcgccagagcaatgatgagttacaagaagctcgtaaagtgttaatagcaaaatatgatgttgacccagcagcaaaggcagctgctacaactgcccttggcatccaagttgggtgtggattcggctcctgcacacctgctcctgcagccctcccatgcagcccccctgccgcacctgctcctgccaccctccacagcagccctacgctctaccccatccttctgccgcaaaccacaagtccttgccgacctgcacagcagcccccgctgcttcctactacacggccgcacgctcccctgcaccttcctgctgcacagccgcgcgcacacccagcagcccgtgcacacctgcacccagcagccctcgctgcagcctatagcccgtacaagcctagcccgtgcaccaccatccctgctgctgcatctcttctgactgccagcgaaatgaaagaaagaaaaaaaaaaaccagaaaacagaaagaagaagaagaagaagaagcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003725 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010468 GO:0010569 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

304

Amino Acids

33.5

Weight (kDa)

8.63

Isoelectric Point (pI)

71.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15910 AT4G00380 AT4G00380 AT4G00380
fragaria_vesca	FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780
malus_domestica	MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1
prunus_persica	Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621
rosa_laevigata	RLG00000019313 RLG00000019320
rosa_multiflora	Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111310 Rroxscaffold_2G00111340
rosa_rugosa	Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800
rosa_samantha	Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500
rosa_wichuraiana	Rw2G029490 Rw2G029510 Rw4G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	556, 595, 768
Acc36I	ACCTGC	4 cut(s)	556, 595, 670, 768
AccII	CGCG	2 cut(s)	733, 735
AciI	CCGC	6 cut(s)	173, 582, 638, 677, 698, 731
AclWI	GGATC	1 cut(s)	64
AcoI	YGGCCR	2 cut(s)	3, 695
AfaI	GTAC	1 cut(s)	797
AgsI	TTSAA	5 cut(s)	146, 200, 226, 257, 332
AjnI	CCWGG	1 cut(s)	50
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	3 cut(s)	370, 443, 494
AluI	AGCT	3 cut(s)	370, 443, 494
Alw21I	GWGCWC	2 cut(s)	757, 815
Alw44I	GTGCAC	2 cut(s)	753, 811
AlwI	GGATC	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	2 cut(s)	3, 695
ApaLI	GTGCAC	2 cut(s)	753, 811
ArsI	GACNNNNNNTTYG	2 cut(s)	634, 666
AspLEI	GCGC	3 cut(s)	417, 735, 737
AsuHPI	GGTGA	2 cut(s)	292, 397
AvaI	CYCGRG	1 cut(s)	60
BaeGI	GKGCMC	2 cut(s)	757, 815
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	91, 339
Bbv12I	GWGCWC	2 cut(s)	757, 815
BccI	CCATC	2 cut(s)	635, 827
BceAI	ACGGC	2 cut(s)	63, 710
BciT130I	CCWGG	1 cut(s)	52
BclI	TGATCA	1 cut(s)	402
BfaI	CTAG	1 cut(s)	804
BfmI	CTRYAG	3 cut(s)	555, 780, 787
BfoI	RGCGCY	1 cut(s)	418
BfuAI	ACCTGC	4 cut(s)	556, 595, 670, 768
Bme1390I	CCNGG	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	538
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	3 cut(s)	298, 522, 842
BpiI	GAAGAC	2 cut(s)	91, 339
BpuEI	CTTGAG	2 cut(s)	208, 392
BsaJI	CCNNGG	2 cut(s)	51, 508
BsaXI	ACNNNNNCTCC	4 cut(s)	22, 52, 535, 565
Bse3DI	GCAATG	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	2 cut(s)	51, 508
BseGI	GGATG	6 cut(s)	115, 181, 304, 513, 627, 819
BseMI	GCAATG	1 cut(s)	430
BsePI	GCGCGC	1 cut(s)	733
BseSI	GKGCMC	2 cut(s)	757, 815
BseX3I	CGGCCG	1 cut(s)	695
BseYI	CCCAGC	3 cut(s)	478, 742, 766
BsgI	GTGCAG	5 cut(s)	526, 648, 695, 708, 746
Bsh1236I	CGCG	2 cut(s)	733, 735
Bsh1285I	CGRYCG	1 cut(s)	698
BshFI	GGCC	2 cut(s)	5, 697
BsiEI	CGRYCG	1 cut(s)	698
BsiHKAI	GWGCWC	2 cut(s)	757, 815
BsiHKCI	CYCGRG	1 cut(s)	60
BsnI	GGCC	2 cut(s)	5, 697
BsoBI	CYCGRG	1 cut(s)	60
Bsp1286I	GDGCHC	2 cut(s)	757, 815
Bsp143I	GATC	3 cut(s)	12, 56, 402
BspACI	CCGC	6 cut(s)	173, 582, 638, 677, 698, 731
BspANI	GGCC	2 cut(s)	5, 697
BspFNI	CGCG	2 cut(s)	733, 735
BspLI	GGNNCC	1 cut(s)	538
BspMAI	CTGCAG	2 cut(s)	559, 784
BspMI	ACCTGC	4 cut(s)	556, 595, 670, 768
BspPI	GGATC	1 cut(s)	64
BspQI	GCTCTTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	430
BssECI	CCNNGG	2 cut(s)	51, 508
BssHII	GCGCGC	1 cut(s)	733
BssMI	GATC	3 cut(s)	12, 56, 402
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	195, 843
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstC8I	GCNNGC	4 cut(s)	7, 702, 735, 850
BstF5I	GGATG	6 cut(s)	115, 181, 304, 513, 627, 819
BstFNI	CGCG	2 cut(s)	733, 735
BstH2I	RGCGCY	1 cut(s)	418
BstHHI	GCGC	3 cut(s)	417, 735, 737
BstKTI	GATC	3 cut(s)	15, 59, 405
BstMBI	GATC	3 cut(s)	12, 56, 402
BstMCI	CGRYCG	1 cut(s)	698
BstNI	CCWGG	1 cut(s)	52
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	3 cut(s)	555, 780, 787
BstSLI	GKGCMC	2 cut(s)	757, 815
BstUI	CGCG	2 cut(s)	733, 735
BstV2I	GAAGAC	2 cut(s)	91, 339
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BstZI	CGGCCG	1 cut(s)	695
BsuRI	GGCC	2 cut(s)	5, 697
BtgZI	GCGATG	2 cut(s)	59, 138
BtsCI	GGATG	6 cut(s)	115, 181, 304, 513, 627, 819
BveI	ACCTGC	4 cut(s)	556, 595, 670, 768
Cac8I	GCNNGC	4 cut(s)	7, 702, 735, 850
CfoI	GCGC	3 cut(s)	417, 735, 737
Csp6I	GTAC	1 cut(s)	796
CviAII	CATG	3 cut(s)	95, 337, 567
CviQI	GTAC	1 cut(s)	796
DpnI	GATC	3 cut(s)	14, 58, 404
DpnII	GATC	3 cut(s)	12, 56, 402
EaeI	YGGCCR	2 cut(s)	3, 695
EagI	CGGCCG	1 cut(s)	695
Eam1104I	CTCTTC	2 cut(s)	195, 843
EarI	CTCTTC	2 cut(s)	195, 843
EciI	GGCGGA	1 cut(s)	188
EclXI	CGGCCG	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	508
Eco52I	CGGCCG	1 cut(s)	695
Eco88I	CYCGRG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	3 cut(s)	98, 340, 570
FaiI	YATR	5 cut(s)	96, 338, 468, 568, 789
FatI	CATG	3 cut(s)	94, 336, 566
FauI	CCCGC	1 cut(s)	684
FbaI	TGATCA	1 cut(s)	402
FokI	GGATG	6 cut(s)	102, 188, 311, 500, 614, 806
FspBI	CTAG	1 cut(s)	804
GlaI	GCGC	3 cut(s)	416, 734, 736
GsaI	CCCAGC	3 cut(s)	482, 746, 770
HaeII	RGCGCY	1 cut(s)	418
HaeIII	GGCC	2 cut(s)	5, 697
HhaI	GCGC	3 cut(s)	417, 735, 737
Hin1II	CATG	3 cut(s)	98, 340, 570
Hin6I	GCGC	3 cut(s)	415, 733, 735
HinP1I	GCGC	3 cut(s)	415, 733, 735
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	6 cut(s)	18, 26, 31, 107, 340, 531
HphI	GGTGA	2 cut(s)	292, 397
Hpy166II	GTNNAC	3 cut(s)	475, 755, 813
Hpy188I	TCNGA	4 cut(s)	17, 120, 402, 843
Hpy188III	TCNNGA	3 cut(s)	60, 187, 344
Hpy8I	GTNNAC	3 cut(s)	475, 755, 813
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	4 cut(s)	232, 305, 641, 725
Hsp92II	CATG	3 cut(s)	98, 340, 570
HspAI	GCGC	3 cut(s)	415, 733, 735
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	3 cut(s)	12, 56, 402
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	5 cut(s)	160, 542, 556, 595, 709
LweI	GCATC	3 cut(s)	298, 522, 842
MaeI	CTAG	1 cut(s)	804
MaeIII	GTNAC	3 cut(s)	23, 138, 432
MalI	GATC	3 cut(s)	14, 58, 404
MboI	GATC	3 cut(s)	12, 56, 402
MfeI	CAATTG	1 cut(s)	146
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	2 cut(s)	757, 815
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	146, 221, 252, 260, 272, 347
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	12, 20, 25
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	6 cut(s)	99, 183, 271, 572, 611, 785
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	263, 318, 363, 390, 455
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	494, 679
MspR9I	CCNGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	52
MvnI	CGCG	2 cut(s)	733, 735
NdeII	GATC	3 cut(s)	12, 56, 402
NlaIII	CATG	3 cut(s)	98, 340, 570
NlaIV	GGNNCC	1 cut(s)	538
NmuCI	GTSAC	1 cut(s)	23
NspI	RCATGY	1 cut(s)	98
PaeR7I	CTCGAG	1 cut(s)	60
PaqCI	CACCTGC	3 cut(s)	556, 595, 768
PauI	GCGCGC	1 cut(s)	733
PciSI	GCTCTTC	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	3 cut(s)	67, 76, 88
PfeI	GAWTC	3 cut(s)	107, 340, 531
PleI	GAGTC	3 cut(s)	12, 20, 25
PpsI	GAGTC	3 cut(s)	12, 20, 25
Psp6I	CCWGG	1 cut(s)	50
PspFI	CCCAGC	3 cut(s)	478, 742, 766
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	538
PstI	CTGCAG	2 cut(s)	559, 784
PsuI	RGATCY	1 cut(s)	56
PteI	GCGCGC	1 cut(s)	733
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	797
RsaNI	GTAC	1 cut(s)	796
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	5 cut(s)	263, 318, 363, 390, 455
Sau3AI	GATC	3 cut(s)	12, 56, 402
SchI	GAGTC	3 cut(s)	12, 20, 25
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	2 cut(s)	757, 815
SfaNI	GCATC	3 cut(s)	298, 522, 842
SfcI	CTRYAG	3 cut(s)	555, 780, 787
Sfr274I	CTCGAG	1 cut(s)	60
SlaI	CTCGAG	1 cut(s)	60
SmlI	CTYRAG	3 cut(s)	60, 187, 371
SmoI	CTYRAG	3 cut(s)	60, 187, 371
Sse9I	AATT	6 cut(s)	146, 221, 252, 260, 272, 347
SsiI	CCGC	6 cut(s)	173, 582, 638, 677, 698, 731
SspMI	CTAG	1 cut(s)	804
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	508
TaqI	TCGA	4 cut(s)	29, 61, 82, 91
TasI	AATT	6 cut(s)	146, 221, 252, 260, 272, 347
TauI	GCSGC	4 cut(s)	584, 640, 700, 733
TfiI	GAWTC	3 cut(s)	107, 340, 531
Tru1I	TTAA	5 cut(s)	263, 318, 363, 390, 455
Tru9I	TTAA	5 cut(s)	263, 318, 363, 390, 455
TseFI	GTSAC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	7 cut(s)	99, 104, 299, 315, 324, 353, 872
VneI	GTGCAC	2 cut(s)	753, 811
XceI	RCATGY	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XhoI	CTCGAG	1 cut(s)	60
XspI	CTAG	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.