Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003499.1

Orthogroup ID

OG0002080

Physical Location & Seq

Genomic Coordinates Reverse (-)

84099 .. 87456

Gene Structure 3358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003499.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgaacacgggtggacagtttgttagccattgtgacatgaaagtagcgagttgggttactcgtgatcatggacacgggctggaggtcatgaggtgtcgagtggtcaggataatcagggttgagagcgagctgagtagggcagcggggttgacatcagcacttggtctattttggcgctctcagcggctcaacctctctccgactgtcggagtccccggtgacaacgaatttctgtcagcactcattcactcttggtttgcttcttcaactcctcctcaagctgtcaagccactcctcaagcagcaaactttgggaaatctcaaagctttacatacaaaagagagattgttgaagaaaaagctttacatacttcaattggcttttgtggagcaaaaaaaggcggatgagagtgtcttgagggtggttgaagagcaaaagagggaaaaagaggatgccttgcataaaatacttcagttagaaaagaaattgaatgacaaacagaaggtagaaatggaaattgaagaattaaatggtaaattagaggtgatgaagcatcttggggatgaagatgatgaaggcgttaaaaagaagattgaagacatgaatcaagaattgggggaaaaagttaaagagcttgagcatttggaaatattgaatcaaactctgatcaccaatgagcgcaagagcaatgatgagttacaagaagctcgtaaagtgttaatagcagtatgcatttctttttcctgtgaacttggactttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003725 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010468 GO:0010569 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

254

Amino Acids

28.93

Weight (kDa)

6.73

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15910 AT4G00380 AT4G00380 AT4G00380
fragaria_vesca	FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780
malus_domestica	MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1
prunus_persica	Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621
rosa_laevigata	RLG00000019313 RLG00000019320
rosa_multiflora	Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111310 Rroxscaffold_2G00111340
rosa_rugosa	Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800
rosa_samantha	Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500
rosa_wichuraiana	Rw2G029490 Rw2G029510 Rw4G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	143, 184, 401
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	8 cut(s)	267, 352, 374, 428, 490, 521, 596, 655
AjuI	GAANNNNNNNTTGG	2 cut(s)	596, 628
AluBI	AGCT	6 cut(s)	130, 281, 326, 361, 634, 707
AluI	AGCT	6 cut(s)	130, 281, 326, 361, 634, 707
ApeKI	GCWGC	2 cut(s)	140, 301
ApoI	RAATTY	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	177, 681
AsuC2I	CCSGG	1 cut(s)	216
AsuHPI	GGTGA	3 cut(s)	230, 556, 661
BauI	CACGAG	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	152, 313
BclI	TGATCA	2 cut(s)	64, 666
BcnI	CCSGG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	178
BisI	GCNGC	3 cut(s)	141, 185, 302
BlsI	GCNGC	3 cut(s)	142, 186, 303
Bme1390I	CCNGG	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	442, 562
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	1 cut(s)	101
BpuEI	CTTGAG	4 cut(s)	261, 281, 436, 656
BpuMI	CCSGG	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	694
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	3 cut(s)	409, 457, 568
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	2 cut(s)	122, 194
BseRI	GAGGAG	3 cut(s)	261, 264, 284
BseXI	GCAGC	2 cut(s)	152, 313
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	64, 666
BspACI	CCGC	3 cut(s)	143, 184, 401
BspCNI	CTCAG	2 cut(s)	123, 193
BspHI	TCATGA	1 cut(s)	87
BspQI	GCTCTTC	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	694
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	2 cut(s)	64, 666
BssSI	CACGAG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	60
Bst4CI	ACNGT	2 cut(s)	18, 205
Bst6I	CTCTTC	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	131, 180
BstF5I	GGATG	3 cut(s)	409, 457, 568
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	177, 681
BstKTI	GATC	2 cut(s)	67, 669
BstMBI	GATC	2 cut(s)	64, 666
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	152, 313
BstV2I	GAAGAC	1 cut(s)	603
BtsCI	GGATG	3 cut(s)	409, 457, 568
Cac8I	GCNNGC	1 cut(s)	128
CciI	TCATGA	1 cut(s)	87
CfoI	GCGC	2 cut(s)	177, 681
CviAII	CATG	4 cut(s)	37, 68, 88, 601
DdeI	CTNAG	2 cut(s)	131, 180
DpnI	GATC	2 cut(s)	66, 668
DpnII	GATC	2 cut(s)	64, 666
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
EciI	GGCGGA	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	455
EcoT22I	ATGCAT	1 cut(s)	734
FaeI	CATG	4 cut(s)	40, 71, 91, 604
FaiI	YATR	8 cut(s)	38, 69, 89, 333, 368, 462, 602, 730
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	4 cut(s)	36, 67, 87, 600
FauI	CCCGC	1 cut(s)	136
FbaI	TGATCA	2 cut(s)	64, 666
Fnu4HI	GCNGC	3 cut(s)	141, 185, 302
FokI	GGATG	3 cut(s)	416, 464, 575
Fsp4HI	GCNGC	3 cut(s)	141, 185, 302
GlaI	GCGC	2 cut(s)	176, 680
GluI	GCNGC	3 cut(s)	141, 185, 302
GsuI	CTGGAG	1 cut(s)	101
HaeII	RGCGCY	1 cut(s)	178
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	2 cut(s)	177, 681
Hin1II	CATG	4 cut(s)	40, 71, 91, 604
Hin6I	GCGC	2 cut(s)	175, 679
HinP1I	GCGC	2 cut(s)	175, 679
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HindIII	AAGCTT	2 cut(s)	324, 359
HinfI	GANTC	3 cut(s)	210, 604, 655
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	3 cut(s)	230, 556, 661
Hpy166II	GTNNAC	3 cut(s)	14, 150, 749
Hpy188I	TCNGA	3 cut(s)	201, 209, 666
Hpy188III	TCNNGA	5 cut(s)	62, 88, 106, 415, 608
Hpy8I	GTNNAC	3 cut(s)	14, 150, 749
HpyAV	CCTTC	2 cut(s)	496, 569
HpyCH4III	ACNGT	2 cut(s)	18, 205
HpyCH4V	TGCA	2 cut(s)	460, 732
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	2 cut(s)	131, 180
Hsp92II	CATG	4 cut(s)	40, 71, 91, 604
HspAI	GCGC	2 cut(s)	175, 679
Ksp22I	TGATCA	2 cut(s)	64, 666
Kzo9I	GATC	2 cut(s)	64, 666
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	5 cut(s)	65, 91, 100, 229, 757
Lsp1109I	GCAGC	2 cut(s)	152, 313
LweI	GCATC	2 cut(s)	442, 562
MaeIII	GTNAC	4 cut(s)	32, 55, 218, 696
MalI	GATC	2 cut(s)	66, 668
MboI	GATC	2 cut(s)	64, 666
MboII	GAAGA	7 cut(s)	255, 364, 440, 533, 578, 601, 608
MfeI	CAATTG	1 cut(s)	374
MluCI	AATT	7 cut(s)	227, 374, 485, 516, 524, 536, 611
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	2 cut(s)	187, 224
Mph1103I	ATGCAT	1 cut(s)	734
MseI	TTAA	5 cut(s)	527, 582, 627, 719, 763
MspA1I	CMGCKG	2 cut(s)	143, 184
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	216
MunI	CAATTG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	2 cut(s)	64, 666
NlaIII	CATG	4 cut(s)	40, 71, 91, 604
NmuCI	GTSAC	2 cut(s)	32, 218
NsiI	ATGCAT	1 cut(s)	734
PagI	TCATGA	1 cut(s)	87
PciSI	GCTCTTC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	604, 655
PkrI	GCNGC	3 cut(s)	142, 186, 303
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	5 cut(s)	527, 582, 627, 719, 763
SatI	GCNGC	3 cut(s)	141, 185, 302
Sau3AI	GATC	2 cut(s)	64, 666
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	216
SfaNI	GCATC	2 cut(s)	442, 562
SmlI	CTYRAG	4 cut(s)	276, 296, 415, 635
SmoI	CTYRAG	4 cut(s)	276, 296, 415, 635
Sse9I	AATT	7 cut(s)	227, 374, 485, 516, 524, 536, 611
SsiI	CCGC	3 cut(s)	143, 184, 401
SspI	AATATT	1 cut(s)	651
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	18, 205
TaqI	TCGA	1 cut(s)	97
TasI	AATT	7 cut(s)	227, 374, 485, 516, 524, 536, 611
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	2 cut(s)	604, 655
Tru1I	TTAA	5 cut(s)	527, 582, 627, 719, 763
Tru9I	TTAA	5 cut(s)	527, 582, 627, 719, 763
TseFI	GTSAC	2 cut(s)	32, 218
TseI	GCWGC	2 cut(s)	140, 301
Tsp45I	GTSAC	2 cut(s)	32, 218
TspDTI	ATGAA	6 cut(s)	17, 53, 563, 579, 588, 617
XapI	RAATTY	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.