Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002080

Physical Location & Seq

Genomic Coordinates Reverse (-)

43767390 .. 43773107

Gene Structure 5718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG231500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCCGCGCCAACATGCAGAAGGAGATGATGGATGGAGAGACATTGGTACAAAGTGTTCGCATAATCGATCGTTTAAGAACGATGAGAGAAACAAGTTACTTCAATTGGCTTTTGTGGAGCAGAAAAAGGCGGATGAGAGTGTCTTGAGGCTGGTTGAAGAGCAAAAGAGGGAAAAAGAGGATGCCTTGCATAAAATACTTCAGTTAGAAAAGAAATTGAATGACAAACAGAAGGTAGAAATGGAAATTGAAGAATTAAATGGTAAATTAGAGGTGATGAAGCATCTTGGGGATGAAGATGATGAAGCCGTTAAAAAGAAGATTGAAGACATGAATCAAGAATTGGGGGAAAAAGTTAAAGAGCTTGAGCATTTGGAAATAGTGAATCAAACTCTGATCACCAAAGGCGCCAGAGCAATGATGAGTTACAAGAAGCTCGTAAAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003725 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010468 GO:0010569 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

149

Amino Acids

17.45

Weight (kDa)

6.02

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15910 AT4G00380 AT4G00380 AT4G00380
fragaria_vesca	FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780
malus_domestica	MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1
prunus_persica	Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621
rosa_laevigata	RLG00000019313 RLG00000019320
rosa_multiflora	Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111310 Rroxscaffold_2G00111340
rosa_rugosa	Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800
rosa_samantha	Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500
rosa_wichuraiana	Rw2G029490 Rw2G029510 Rw4G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	407
AccII	CGCG	1 cut(s)	7
AciI	CCGC	2 cut(s)	5, 131
AcuI	CTGAAG	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	408
AfaI	GTAC	1 cut(s)	49
AgsI	TTSAA	5 cut(s)	104, 158, 220, 251, 326
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	2 cut(s)	364, 436
AluI	AGCT	2 cut(s)	364, 436
Alw26I	GTCTC	1 cut(s)	33
AspLEI	GCGC	2 cut(s)	9, 410
AsuHPI	GGTGA	2 cut(s)	286, 391
BanI	GGYRCC	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	333
BccI	CCATC	2 cut(s)	23, 27
BceAI	ACGGC	1 cut(s)	293
BclI	TGATCA	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	411
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	409
BmsI	GCATC	2 cut(s)	172, 292
BpiI	GAAGAC	1 cut(s)	333
BpuEI	CTTGAG	2 cut(s)	166, 386
Bsa29I	ATCGAT	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	423
BseCI	ATCGAT	1 cut(s)	67
BseGI	GGATG	4 cut(s)	38, 139, 187, 298
BseMI	GCAATG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	71
BshNI	GGYRCC	1 cut(s)	407
BshVI	ATCGAT	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	68, 396
BspACI	CCGC	2 cut(s)	5, 131
BspDI	ATCGAT	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	409
BspQI	GCTCTTC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	423
BssMI	GATC	2 cut(s)	68, 396
BssNI	GRCGYC	1 cut(s)	408
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	408
BstF5I	GGATG	4 cut(s)	38, 139, 187, 298
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	2 cut(s)	9, 410
BstKTI	GATC	2 cut(s)	71, 399
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	2 cut(s)	68, 396
BstMCI	CGRYCG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	17
BstUI	CGCG	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	333
Bsu15I	ATCGAT	1 cut(s)	67
BsuTUI	ATCGAT	1 cut(s)	67
BtsCI	GGATG	4 cut(s)	38, 139, 187, 298
CfoI	GCGC	2 cut(s)	9, 410
ClaI	ATCGAT	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	2 cut(s)	14, 331
CviJI	RGCY	5 cut(s)	110, 151, 308, 364, 436
CviKI_1	RGCY	5 cut(s)	110, 151, 308, 364, 436
CviQI	GTAC	1 cut(s)	48
DinI	GGCGCC	1 cut(s)	409
DpnI	GATC	2 cut(s)	70, 398
DpnII	GATC	2 cut(s)	68, 396
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	185
EgeI	GGCGCC	1 cut(s)	409
EheI	GGCGCC	1 cut(s)	409
FaeI	CATG	2 cut(s)	17, 334
FaiI	YATR	4 cut(s)	15, 63, 192, 332
FatI	CATG	2 cut(s)	13, 330
FbaI	TGATCA	1 cut(s)	396
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	4 cut(s)	45, 146, 194, 305
Fsp4HI	GCNGC	1 cut(s)	5
GlaI	GCGC	2 cut(s)	8, 409
GluI	GCNGC	1 cut(s)	5
HaeII	RGCGCY	1 cut(s)	411
HhaI	GCGC	2 cut(s)	9, 410
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	2 cut(s)	17, 334
Hin6I	GCGC	2 cut(s)	7, 408
HinP1I	GCGC	2 cut(s)	7, 408
HinfI	GANTC	2 cut(s)	334, 385
HphI	GGTGA	2 cut(s)	286, 391
Hpy188I	TCNGA	1 cut(s)	396
Hpy188III	TCNNGA	2 cut(s)	145, 338
HpyAV	CCTTC	2 cut(s)	14, 226
HpyCH4V	TGCA	2 cut(s)	17, 190
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	2 cut(s)	17, 334
HspAI	GCGC	2 cut(s)	7, 408
KasI	GGCGCC	1 cut(s)	407
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	68, 396
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	2 cut(s)	137, 424
LweI	GCATC	2 cut(s)	172, 292
MaeIII	GTNAC	2 cut(s)	96, 425
MalI	GATC	2 cut(s)	70, 398
MboI	GATC	2 cut(s)	68, 396
MboII	GAAGA	5 cut(s)	170, 263, 308, 331, 338
MfeI	CAATTG	1 cut(s)	104
MluCI	AATT	6 cut(s)	104, 215, 246, 254, 266, 341
Mly113I	GGCGCC	1 cut(s)	408
MnlI	CCTC	4 cut(s)	141, 162, 172, 265
MseI	TTAA	5 cut(s)	75, 257, 312, 357, 448
MunI	CAATTG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	7
NarI	GGCGCC	1 cut(s)	408
NdeII	GATC	2 cut(s)	68, 396
NlaIII	CATG	2 cut(s)	17, 334
NlaIV	GGNNCC	1 cut(s)	409
NspI	RCATGY	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	334, 385
PkrI	GCNGC	1 cut(s)	6
Ple19I	CGATCG	1 cut(s)	71
PluTI	GGCGCC	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	409
PsrI	GAACNNNNNNTAC	2 cut(s)	40, 72
PvuI	CGATCG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	5 cut(s)	75, 257, 312, 357, 448
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	68, 396
SetI	ASST	4 cut(s)	237, 276, 366, 438
SfaNI	GCATC	2 cut(s)	172, 292
SfoI	GGCGCC	1 cut(s)	409
SmlI	CTYRAG	2 cut(s)	145, 365
SmoI	CTYRAG	2 cut(s)	145, 365
Sse9I	AATT	6 cut(s)	104, 215, 246, 254, 266, 341
SsiI	CCGC	2 cut(s)	5, 131
SspDI	GGCGCC	1 cut(s)	407
TaqI	TCGA	1 cut(s)	67
TasI	AATT	6 cut(s)	104, 215, 246, 254, 266, 341
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	334, 385
Tru1I	TTAA	5 cut(s)	75, 257, 312, 357, 448
Tru9I	TTAA	5 cut(s)	75, 257, 312, 357, 448
TspDTI	ATGAA	4 cut(s)	293, 309, 318, 347
XceI	RCATGY	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.