Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002080

Physical Location & Seq

Genomic Coordinates Reverse (-)

38848155 .. 38859463

Gene Structure 11309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG153900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGATTAATTTCTTTTTTTCCAGGGGTCCATTCAGATGCAATTGTCATGATCGAAACAGAAAGAGGAAGACTTTGAGAAATACAAAGGTCTGGAAGATTTGGAATTTATATAAGGGGTTCAAACCAAAAGAGAGATTGTTGAAGAAAAAGCTTTACATACTTCAATTGGCTTTTGTGGAGCAGAAAAAGGCGGATGAGAGTGTCTTGAGGCTGGTTGAAGAGCAAAAGAGGGGAAAAGAGGATGCCTTGCATAAAATACTTCAGTTAGAAAAGAAATTGAATGACAAACAGAAGGTAGAAATGGAAATTGAAGAATTAAATGGTAAATTAGAGGTGATGAAGCATCTTGGGGATGAAGATGATGAAGGCGTTAAAAAGAAGATTGAAGACATGAATCAAGAATTGGGGGAAAAAGTTAAAGAGCTTGAGCATTTGGAAATACTGAATCAAACTCTGATCACCAAAGAGCGCCAGAGCAATGATGAGTTACAAGAAGCTAGTAAAGTGTTAATAGCAGTATGCATTTCTTTTTCCTGTGAACTTGGACTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003725 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010468 GO:0010569 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

184

Amino Acids

21.8

Weight (kDa)

8.84

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15910 AT4G00380 AT4G00380 AT4G00380
fragaria_vesca	FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780
malus_domestica	MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1
prunus_persica	Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621
rosa_laevigata	RLG00000019313 RLG00000019320
rosa_multiflora	Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111310 Rroxscaffold_2G00111340
rosa_rugosa	Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800
rosa_samantha	Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500
rosa_wichuraiana	Rw2G029490 Rw2G029510 Rw4G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	245
AgsI	TTSAA	7 cut(s)	121, 142, 164, 218, 280, 311, 386
AjnI	CCWGG	1 cut(s)	20
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	3 cut(s)	151, 424, 497
AluI	AGCT	3 cut(s)	151, 424, 497
ApoI	RAATTY	1 cut(s)	103
AseI	ATTAAT	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	346, 451
AvaII	GGWCC	1 cut(s)	26
BbsI	GAAGAC	2 cut(s)	74, 393
BciT130I	CCWGG	1 cut(s)	22
BclI	TGATCA	1 cut(s)	456
BfaI	CTAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	472
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	3 cut(s)	26, 232, 352
BpiI	GAAGAC	2 cut(s)	74, 393
BpuEI	CTTGAG	2 cut(s)	226, 446
BsaJI	CCNNGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	3 cut(s)	199, 247, 358
BseMI	GCAATG	1 cut(s)	484
Bsp143I	GATC	2 cut(s)	49, 456
BspACI	CCGC	1 cut(s)	191
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	27
BspQI	GCTCTTC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	484
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	49, 456
Bst2UI	CCWGG	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	213
BstF5I	GGATG	3 cut(s)	199, 247, 358
BstH2I	RGCGCY	1 cut(s)	472
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	2 cut(s)	52, 459
BstMBI	GATC	2 cut(s)	49, 456
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstV2I	GAAGAC	2 cut(s)	74, 393
BtsCI	GGATG	3 cut(s)	199, 247, 358
CciI	TCATGA	1 cut(s)	46
CfoI	GCGC	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	26
CviAII	CATG	2 cut(s)	47, 391
CviJI	RGCY	5 cut(s)	151, 170, 211, 424, 497
CviKI_1	RGCY	5 cut(s)	151, 170, 211, 424, 497
DpnI	GATC	2 cut(s)	51, 458
DpnII	GATC	2 cut(s)	49, 456
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	20
EcoT22I	ATGCAT	1 cut(s)	524
FaeI	CATG	2 cut(s)	50, 394
FaiI	YATR	7 cut(s)	48, 109, 111, 158, 252, 392, 520
FatI	CATG	2 cut(s)	46, 390
FbaI	TGATCA	1 cut(s)	456
FokI	GGATG	3 cut(s)	206, 254, 365
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	1 cut(s)	470
HaeII	RGCGCY	1 cut(s)	472
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	2 cut(s)	50, 394
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	394, 445
HphI	GGTGA	2 cut(s)	346, 451
Hpy166II	GTNNAC	1 cut(s)	539
Hpy188I	TCNGA	2 cut(s)	35, 456
Hpy188III	TCNNGA	4 cut(s)	47, 91, 205, 398
Hpy8I	GTNNAC	1 cut(s)	539
HpyAV	CCTTC	2 cut(s)	286, 359
HpyCH4V	TGCA	3 cut(s)	39, 250, 522
Hsp92II	CATG	2 cut(s)	50, 394
HspAI	GCGC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	2 cut(s)	49, 456
LguI	GCTCTTC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	6 cut(s)	7, 34, 76, 197, 485, 547
LweI	GCATC	3 cut(s)	26, 232, 352
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	486
MalI	GATC	2 cut(s)	51, 458
MboI	GATC	2 cut(s)	49, 456
MboII	GAAGA	8 cut(s)	79, 106, 154, 230, 323, 368, 391, 398
MfeI	CAATTG	2 cut(s)	40, 164
MluCI	AATT	9 cut(s)	7, 40, 103, 164, 275, 306, 314, 326, 401
MnlI	CCTC	5 cut(s)	57, 201, 222, 232, 325
Mph1103I	ATGCAT	1 cut(s)	524
MseI	TTAA	6 cut(s)	6, 317, 372, 417, 509, 553
MslI	CAYNNNNRTG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	22
MunI	CAATTG	2 cut(s)	40, 164
MvaI	CCWGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	49, 456
NlaIII	CATG	2 cut(s)	50, 394
NlaIV	GGNNCC	1 cut(s)	27
NsiI	ATGCAT	1 cut(s)	524
PagI	TCATGA	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	394, 445
PshBI	ATTAAT	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	34
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	6 cut(s)	6, 317, 372, 417, 509, 553
Sau3AI	GATC	2 cut(s)	49, 456
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	22
SetI	ASST	6 cut(s)	90, 153, 297, 336, 426, 499
SfaNI	GCATC	3 cut(s)	26, 232, 352
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	205, 425
SmoI	CTYRAG	2 cut(s)	205, 425
Sse9I	AATT	9 cut(s)	7, 40, 103, 164, 275, 306, 314, 326, 401
SsiI	CCGC	1 cut(s)	191
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	20
TaqI	TCGA	1 cut(s)	52
TasI	AATT	9 cut(s)	7, 40, 103, 164, 275, 306, 314, 326, 401
TfiI	GAWTC	2 cut(s)	394, 445
Tru1I	TTAA	6 cut(s)	6, 317, 372, 417, 509, 553
Tru9I	TTAA	6 cut(s)	6, 317, 372, 417, 509, 553
TspDTI	ATGAA	4 cut(s)	353, 369, 378, 407
VpaK11BI	GGWCC	1 cut(s)	26
VspI	ATTAAT	1 cut(s)	6
XapI	RAATTY	1 cut(s)	103
XspI	CTAG	1 cut(s)	498
Zsp2I	ATGCAT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.