Rmu_sc0000886.1_g000004

XH domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000886.1
Physical Location & Seq
Reverse (-)
20915 .. 25968
5054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000886.1_g000004.1.cds

Sequence Viewer

Length: 1917 bp
atggacgcagtggactatagctctgatgaagaatcagatatcagtgaatctgagatcagtgactacaaagataaaccatacgagcagttacgaattggaaagttgaaagtaaagggtcctaatggcactctccgatgccccttttgtgctgggaagaagaaacaagattataagtacaaggatctgcttcaacatgcttccggggtggctaaaggttctgctaacagaagcgctgtccaaaaggccaaccaccttgccttagccctctatttggagaaggagttagctagtgaagcagatcaaacccagcgtccggctcctcccaaacctgttgttaaagaggagaagccagaagatctatatgtgtggccttggactggtgttgttgcaaatatattgttgagccagccaaaggatgggaaagatttgctcgactctgggtattggttgaaaaagttctccaagtatagacctgcagaagtgcatacattcttaaatgaagaggaacaagcggcaggggctgtcgtagtttttagtaaagattggaatggcttcgggaatgctacggattttgaaaagatgttcatatccgatagtcacgggaaagagcattggtttgcacgaaagcaacagcctggttcaagtatttatgggtggtgtgcgcgctctgatgattatgattcccaagggccagtgggggaattccttcgcaagagaggacagcttcgaacggtatcggacattgtccaggaagcagcccaaagcaaaagtaatgttgtggcaaacctagccaataaaattgatatgacaaatgaaaatttggatgaacttcgatacaaatacaatgagaatgccctgtctttaagtaggatgctagaagaaaaagacaggctacataatgcctttgttgaagaatcaaggagaatgcagacgatgtcacgagataatgttcggagaatattagatgagcaagagaagttgaattacgagttggagtttaagaaaaagaaacttgattcctggagaaaagaattaaacaaacgtgaagcactaactgaacgtgagaggcaaaaacttgacgaggataaaaagaagaacgatgagagaaacaattcgcttcaattggcttctgcggagcagaaaaaggcggatgagagtgtcttgaggctggttgaacaacaaaagagggaaaaagaggatgccttaaataaaatacttcagttagaaaagcaattgaatgccaaacagaaggtagaaatggaaattgaagaactaaaaggtaaattagaggtgatgaagcatcttggggatcaagatgatgatgctgttcaaaagaagatgaaagacatgaaacaagaattgggggaaaaaattgaagagcttgaggatttggaatctctgaatcaaactctaatcgccaaagagcgacagagcaatgatgagttacaagaagctcgtaaagaattaatacaaggtttgactgaaatgttggctggtcgatctcatattgggattaagagaatgggagagctggatcaaaagcccttcctcaacacatgcaagttaagatttcctctcgaggaagcaggggttcaggccttaactctatgctccttgtggcaggaaaatctgaaggatccagattggcatcctttcaaggtgatagagaaagatgggaatcatgaggaaatcatcaatgaggaagatgagaagctacataatctgaaggaagagtggggggttgagatatatgattgtgttgttacagctttaaaagagcttaatgagtataatccaagtgggcggtatgttattcctgagctctggaacgtaaaagaaggaagaaaagctacattgaaggaggttattgcctttatcttgaagaatattaagacactcaagcggaagagaacatga

Protein Analysis

638

Amino Acids

73.9

Weight (kDa)

5.77

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
Acc36I ACCTGC 1 cut(s) 481
AccB7I CCANNNNNTGG 1 cut(s) 416
AccII CGCG 1 cut(s) 664
AciI CCGC 5 cut(s) 512, 1133, 1148, 1804, 1903
AclWI GGATC 5 cut(s) 189, 1317, 1542, 1631, 1644
AcsI RAATTY 2 cut(s) 701, 817
AcuI CTGAAG 3 cut(s) 1202, 1652, 1745
AfaI GTAC 1 cut(s) 176
AfeI AGCGCT 1 cut(s) 232
AfiI CCNNNNNNNGG 5 cut(s) 271, 313, 377, 412, 416
AjnI CCWGG 3 cut(s) 634, 747, 1019
AjuI GAANNNNNNNTTGG 4 cut(s) 974, 1006, 1343, 1375
Alw21I GWGCWC 1 cut(s) 1824
AlwI GGATC 5 cut(s) 189, 1317, 1542, 1631, 1644
AlwNI CAGNNNCTG 1 cut(s) 521
Ama87I CYCGRG 1 cut(s) 1577
Aor51HI AGCGCT 1 cut(s) 232
AoxI GGCC 4 cut(s) 243, 368, 689, 1596
ApeKI GCWGC 1 cut(s) 755
ApoI RAATTY 2 cut(s) 701, 817
ArsI GACNNNNNNTTYG 2 cut(s) 295, 327
AseI ATTAAT 1 cut(s) 1466
Asp700I GAANNNNTTC 4 cut(s) 455, 551, 705, 1111
AspLEI GCGC 3 cut(s) 233, 664, 666
AspS9I GGNCC 2 cut(s) 116, 689
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 2 cut(s) 1303, 1672
AsuII TTCGAA 1 cut(s) 727
AvaI CYCGRG 1 cut(s) 1577
AvaII GGWCC 1 cut(s) 116
BamHI GGATCC 1 cut(s) 1636
BanII GRGCYC 1 cut(s) 1824
BarI GAAGNNNNNNTAC 4 cut(s) 968, 1000, 1834, 1866
BauI CACGAG 1 cut(s) 939
Bbv12I GWGCWC 1 cut(s) 1824
BbvI GCAGC 1 cut(s) 767
BccI CCATC 2 cut(s) 410, 1667
BciT130I CCWGG 3 cut(s) 636, 749, 1021
BcnI CCSGG 1 cut(s) 202
BfaI CTAG 3 cut(s) 288, 788, 875
BfmI CTRYAG 2 cut(s) 16, 474
BfoI RGCGCY 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 481
BglII AGATCT 1 cut(s) 355
BisI GCNGC 2 cut(s) 513, 756
BlsI GCNGC 2 cut(s) 514, 757
Bme1390I CCNGG 4 cut(s) 202, 636, 749, 1021
Bme18I GGWCC 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 1577
BmgT120I GGNCC 2 cut(s) 116, 689
BmiI GGNNCC 3 cut(s) 117, 318, 1638
BmrFI CCNGG 4 cut(s) 202, 636, 749, 1021
BmsI GCATC 6 cut(s) 125, 861, 1189, 1309, 1312, 1657
BpmI CTGGAG 1 cut(s) 1042
Bpu10I CCTNAGC 2 cut(s) 259, 1818
Bpu14I TTCGAA 1 cut(s) 727
BpuEI CTTGAG 3 cut(s) 1183, 1403, 1883
BpuMI CCSGG 1 cut(s) 202
BsaBI GATNNNNATC 2 cut(s) 1647, 1677
BsaJI CCNNGG 3 cut(s) 201, 371, 685
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 5 cut(s) 271, 313, 377, 412, 416
Bse1I ACTGG 2 cut(s) 382, 692
Bse3DI GCAATG 1 cut(s) 1441
Bse8I GATNNNNATC 2 cut(s) 1647, 1677
BseBI CCWGG 3 cut(s) 636, 749, 1021
BseDI CCNNGG 3 cut(s) 201, 371, 685
BseGI GGATG 6 cut(s) 421, 829, 876, 1156, 1204, 1648
BseJI GATNNNNATC 2 cut(s) 1647, 1677
BseLI CCNNNNNNNGG 5 cut(s) 271, 313, 377, 412, 416
BseMI GCAATG 1 cut(s) 1441
BseMII CTCAG 2 cut(s) 42, 1809
BseNI ACTGG 2 cut(s) 382, 692
BsePI GCGCGC 1 cut(s) 662
BseRI GAGGAG 2 cut(s) 309, 356
BseXI GCAGC 1 cut(s) 767
BseYI CCCAGC 2 cut(s) 149, 306
Bsh1236I CGCG 1 cut(s) 664
BshFI GGCC 4 cut(s) 245, 370, 691, 1598
BsiHKAI GWGCWC 1 cut(s) 1824
BsiHKCI CYCGRG 1 cut(s) 1577
BsiSI CCGG 2 cut(s) 201, 314
BslI CCNNNNNNNGG 5 cut(s) 271, 313, 377, 412, 416
BsmI GAATGC 4 cut(s) 565, 856, 930, 1243
BsnI GGCC 4 cut(s) 245, 370, 691, 1598
BsoBI CYCGRG 1 cut(s) 1577
Bsp119I TTCGAA 1 cut(s) 727
Bsp1286I GDGCHC 1 cut(s) 1824
Bsp143I GATC 8 cut(s) 54, 181, 298, 355, 1309, 1499, 1534, 1636
BspACI CCGC 5 cut(s) 512, 1133, 1148, 1804, 1903
BspANI GGCC 4 cut(s) 245, 370, 691, 1598
BspCNI CTCAG 2 cut(s) 43, 1810
BspFNI CGCG 1 cut(s) 664
BspHI TCATGA 1 cut(s) 1681
BspLI GGNNCC 3 cut(s) 117, 318, 1638
BspMAI CTGCAG 1 cut(s) 478
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 5 cut(s) 189, 1317, 1542, 1631, 1644
BspQI GCTCTTC 1 cut(s) 1371
BspT104I TTCGAA 1 cut(s) 727
BsrDI GCAATG 1 cut(s) 1441
BsrI ACTGG 2 cut(s) 382, 692
BssECI CCNNGG 3 cut(s) 201, 371, 685
BssHII GCGCGC 1 cut(s) 662
BssMI GATC 8 cut(s) 54, 181, 298, 355, 1309, 1499, 1534, 1636
BssSI CACGAG 1 cut(s) 939
BssT1I CCWWGG 2 cut(s) 371, 685
Bst2BI CACGAG 1 cut(s) 939
Bst2UI CCWGG 3 cut(s) 636, 749, 1021
Bst4CI ACNGT 1 cut(s) 733
Bst6I CTCTTC 4 cut(s) 495, 1371, 1725, 1901
BstBI TTCGAA 1 cut(s) 727
BstC8I GCNNGC 2 cut(s) 407, 664
BstDEI CTNAG 3 cut(s) 51, 259, 1818
BstF5I GGATG 6 cut(s) 421, 829, 876, 1156, 1204, 1648
BstFNI CGCG 1 cut(s) 664
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 3 cut(s) 233, 664, 666
BstKTI GATC 8 cut(s) 57, 184, 301, 358, 1312, 1502, 1537, 1639
BstMBI GATC 8 cut(s) 54, 181, 298, 355, 1309, 1499, 1534, 1636
BstMWI GCNNNNNNNGC 3 cut(s) 293, 518, 788
BstNI CCWGG 3 cut(s) 636, 749, 1021
BstNSI RCATGY 2 cut(s) 197, 1560
BstSCI CCNGG 4 cut(s) 200, 634, 747, 1019
BstSFI CTRYAG 2 cut(s) 16, 474
BstUI CGCG 1 cut(s) 664
BstV1I GCAGC 1 cut(s) 767
BstX2I RGATCY 3 cut(s) 181, 355, 1636
BstYI RGATCY 3 cut(s) 181, 355, 1636
BsuRI GGCC 4 cut(s) 245, 370, 691, 1598
BtsCI GGATG 6 cut(s) 421, 829, 876, 1156, 1204, 1648
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 4 cut(s) 15, 49, 64, 699
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 2 cut(s) 407, 664
CaiI CAGNNNCTG 1 cut(s) 521
CciI TCATGA 1 cut(s) 1681
CfoI GCGC 3 cut(s) 233, 664, 666
Cfr13I GGNCC 2 cut(s) 116, 689
CseI GACGC 2 cut(s) 14, 299
Csp6I GTAC 1 cut(s) 175
CviAII CATG 5 cut(s) 194, 1348, 1557, 1682, 1914
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 3 cut(s) 51, 259, 1818
DpnI GATC 8 cut(s) 56, 183, 300, 357, 1311, 1501, 1536, 1638
DpnII GATC 8 cut(s) 54, 181, 298, 355, 1309, 1499, 1534, 1636
DraI TTTAAA 1 cut(s) 1773
Eam1104I CTCTTC 4 cut(s) 495, 1371, 1725, 1901
EarI CTCTTC 4 cut(s) 495, 1371, 1725, 1901
EciI GGCGGA 1 cut(s) 1163
Ecl136II GAGCTC 1 cut(s) 1822
Eco130I CCWWGG 2 cut(s) 371, 685
Eco147I AGGCCT 1 cut(s) 1598
Eco24I GRGCYC 1 cut(s) 1824
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 116
Eco47III AGCGCT 1 cut(s) 232
Eco53kI GAGCTC 1 cut(s) 1822
Eco57I CTGAAG 3 cut(s) 1202, 1652, 1745
Eco88I CYCGRG 1 cut(s) 1577
EcoICRI GAGCTC 1 cut(s) 1822
EcoO109I RGGNCCY 1 cut(s) 116
EcoRI GAATTC 1 cut(s) 701
EcoRII CCWGG 3 cut(s) 634, 747, 1019
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 371, 685
EcoT38I GRGCYC 1 cut(s) 1824
ErhI CCWWGG 2 cut(s) 371, 685
FaeI CATG 5 cut(s) 197, 1351, 1560, 1685, 1917
FatI CATG 5 cut(s) 193, 1347, 1556, 1681, 1913
Fnu4HI GCNGC 2 cut(s) 513, 756
FokI GGATG 6 cut(s) 428, 836, 883, 1163, 1211, 1635
FriOI GRGCYC 1 cut(s) 1824
Fsp4HI GCNGC 2 cut(s) 513, 756
FspBI CTAG 3 cut(s) 288, 788, 875
GlaI GCGC 3 cut(s) 232, 663, 665
GluI GCNGC 2 cut(s) 513, 756
GsaI CCCAGC 2 cut(s) 153, 310
GsuI CTGGAG 1 cut(s) 1042
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 4 cut(s) 245, 370, 691, 1598
HapII CCGG 2 cut(s) 201, 314
HgaI GACGC 2 cut(s) 14, 299
HhaI GCGC 3 cut(s) 233, 664, 666
Hin1II CATG 5 cut(s) 197, 1351, 1560, 1685, 1917
Hin6I GCGC 3 cut(s) 231, 662, 664
HinP1I GCGC 3 cut(s) 231, 662, 664
HinfI GANTC 9 cut(s) 32, 47, 434, 680, 914, 1016, 1394, 1402, 1678
HpaII CCGG 2 cut(s) 201, 314
HphI GGTGA 2 cut(s) 1303, 1672
Hpy166II GTNNAC 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 8 cut(s) 271, 716, 1243, 1555, 1627, 1720, 1832, 1852
HpyCH4III ACNGT 1 cut(s) 733
HpyCH4IV ACGT 3 cut(s) 1042, 1060, 1830
HpyCH4V TGCA 6 cut(s) 389, 476, 484, 620, 928, 1560
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 518, 788
HpyF3I CTNAG 3 cut(s) 51, 259, 1818
HpySE526I ACGT 3 cut(s) 1042, 1060, 1830
Hsp92II CATG 5 cut(s) 197, 1351, 1560, 1685, 1917
HspAI GCGC 3 cut(s) 231, 662, 664
Kzo9I GATC 8 cut(s) 54, 181, 298, 355, 1309, 1499, 1534, 1636
LguI GCTCTTC 1 cut(s) 1371
LmnI GCTCC 3 cut(s) 322, 1135, 1616
Lsp1109I GCAGC 1 cut(s) 767
LweI GCATC 6 cut(s) 125, 861, 1189, 1309, 1312, 1657
MaeI CTAG 3 cut(s) 288, 788, 875
MaeII ACGT 3 cut(s) 1042, 1060, 1830
MaeIII GTNAC 6 cut(s) 59, 87, 596, 936, 1443, 1762
MalI GATC 8 cut(s) 56, 183, 300, 357, 1311, 1501, 1536, 1638
MboI GATC 8 cut(s) 54, 181, 298, 355, 1309, 1499, 1534, 1636
MfeI CAATTG 2 cut(s) 1121, 1232
MflI RGATCY 3 cut(s) 181, 355, 1636
MhlI GDGCHC 1 cut(s) 1824
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 972
MroXI GAANNNNTTC 4 cut(s) 455, 551, 705, 1111
MspI CCGG 2 cut(s) 201, 314
MspR9I CCNGG 4 cut(s) 202, 636, 749, 1021
MunI CAATTG 2 cut(s) 1121, 1232
Mva1269I GAATGC 4 cut(s) 565, 856, 930, 1243
MvaI CCWGG 3 cut(s) 636, 749, 1021
MvnI CGCG 1 cut(s) 664
MwoI GCNNNNNNNGC 3 cut(s) 293, 518, 788
NciI CCSGG 1 cut(s) 202
NdeII GATC 8 cut(s) 54, 181, 298, 355, 1309, 1499, 1534, 1636
NlaIII CATG 5 cut(s) 197, 1351, 1560, 1685, 1917
NlaIV GGNNCC 3 cut(s) 117, 318, 1638
NmuCI GTSAC 3 cut(s) 59, 596, 936
NspI RCATGY 2 cut(s) 197, 1560
NspV TTCGAA 1 cut(s) 727
PaeR7I CTCGAG 1 cut(s) 1577
PagI TCATGA 1 cut(s) 1681
PauI GCGCGC 1 cut(s) 662
PceI AGGCCT 1 cut(s) 1598
PciSI GCTCTTC 1 cut(s) 1371
PctI GAATGC 4 cut(s) 565, 856, 930, 1243
PdmI GAANNNNTTC 4 cut(s) 455, 551, 705, 1111
PfeI GAWTC 8 cut(s) 32, 47, 680, 914, 1016, 1394, 1402, 1678
PflFI GACNNNGTC 2 cut(s) 743, 934
PflMI CCANNNNNTGG 1 cut(s) 416
PfoI TCCNGGA 2 cut(s) 747, 1019
PkrI GCNGC 2 cut(s) 514, 757
PleI GAGTC 1 cut(s) 428
PpsI GAGTC 1 cut(s) 428
PpuMI RGGWCCY 1 cut(s) 116
PshBI ATTAAT 1 cut(s) 1466
PsiI TTATAA 1 cut(s) 171
Psp124BI GAGCTC 1 cut(s) 1824
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 3 cut(s) 634, 747, 1019
PspFI CCCAGC 2 cut(s) 149, 306
PspGI CCWGG 3 cut(s) 634, 747, 1019
PspN4I GGNNCC 3 cut(s) 117, 318, 1638
PspPI GGNCC 2 cut(s) 116, 689
PspPPI RGGWCCY 1 cut(s) 116
PstI CTGCAG 1 cut(s) 478
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 3 cut(s) 181, 355, 1636
PsyI GACNNNGTC 2 cut(s) 743, 934
PteI GCGCGC 1 cut(s) 662
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SacI GAGCTC 1 cut(s) 1824
SapI GCTCTTC 1 cut(s) 1371
SatI GCNGC 2 cut(s) 513, 756
Sau3AI GATC 8 cut(s) 54, 181, 298, 355, 1309, 1499, 1534, 1636
Sau96I GGNCC 2 cut(s) 116, 689
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 4 cut(s) 202, 636, 749, 1021
SduI GDGCHC 1 cut(s) 1824
SfaNI GCATC 6 cut(s) 125, 861, 1189, 1309, 1312, 1657
SfcI CTRYAG 2 cut(s) 16, 474
Sfr274I CTCGAG 1 cut(s) 1577
SfuI TTCGAA 1 cut(s) 727
SinI GGWCC 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 1577
SmlI CTYRAG 4 cut(s) 1162, 1382, 1577, 1898
SmoI CTYRAG 4 cut(s) 1162, 1382, 1577, 1898
SseBI AGGCCT 1 cut(s) 1598
SsiI CCGC 5 cut(s) 512, 1133, 1148, 1804, 1903
SspI AATATT 2 cut(s) 960, 1888
SspMI CTAG 3 cut(s) 288, 788, 875
SstI GAGCTC 1 cut(s) 1824
StuI AGGCCT 1 cut(s) 1598
StyD4I CCNGG 4 cut(s) 200, 634, 747, 1019
StyI CCWWGG 2 cut(s) 371, 685
TaaI ACNGT 1 cut(s) 733
TaiI ACGT 3 cut(s) 1045, 1063, 1833
TaqI TCGA 5 cut(s) 432, 727, 832, 1498, 1578
TatI WGTACW 1 cut(s) 174
TauI GCSGC 1 cut(s) 515
TfiI GAWTC 8 cut(s) 32, 47, 680, 914, 1016, 1394, 1402, 1678
TscAI CASTG 4 cut(s) 15, 49, 64, 699
TseFI GTSAC 3 cut(s) 59, 596, 936
TseI GCWGC 1 cut(s) 755
Tsp45I GTSAC 3 cut(s) 59, 596, 936
TspDTI ATGAA 8 cut(s) 42, 513, 574, 828, 840, 1310, 1355, 1364
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 4 cut(s) 15, 49, 64, 699
Tth111I GACNNNGTC 2 cut(s) 743, 934
Van91I CCANNNNNTGG 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 116
VspI ATTAAT 1 cut(s) 1466
XapI RAATTY 2 cut(s) 701, 817
XceI RCATGY 2 cut(s) 197, 1560
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XhoI CTCGAG 1 cut(s) 1577
XmnI GAANNNNTTC 4 cut(s) 455, 551, 705, 1111
XspI CTAG 3 cut(s) 288, 788, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.