Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002080

Physical Location & Seq

Genomic Coordinates Forward (+)

35929254 .. 35930749

Gene Structure 1496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGACGCAATGGACTATAGCTCTGATGAAGAATCAGATATCAGTGAATCTGAGATCAGTGACTACAAAGATAAACCGTACGAGCAGTTACGAAGTGGCAAGTTGAAAGTAAAGGGTCCTAATGGCACCCTCAGATGCCCCTTTTGTGCTGGCAAGAAGAAACAAGATTATAAGTACAAGGATCTGCTTCAACATGCTTCTGGGGTGGCTAAAGGTTCTGCTAACAGAAGCGTAGTCCAAAAGGCCAACCACCTTGCCTTAGCCCTATATTTGGAGAAGGAGTTAGCCAGTGCAGATCAAACCCTGCGTCCGGCTCCACCCAAACCTGTTGTTAAAGAGGAGAAGCCAGATGATCTTTATGTGTGGCCTTGGACTGGTGTCGTTGCCAATATATTGTTGAGCCAGCCAATGGATGGGAAAGAATTGCTTGACACTGGATATTGGTTGAGAAAGTTTTCCAAGTGTAAACCTGTAGAAGTACATACTTTCTATAATGAAGAGGAACAAGCAGCAGGGGCTGTGGTATTCTTTAGTAAAGATTGGAATGGTTTCGGGAGTGCTACAGAGTTTGAAAATATATTCATATCCAATTGTCACGGAAAAGAGCACTGGAATGCACGAAAGCAACAGCCTGGTTCAAATATTTATGGGTGGTGCGCGCGTTCTGATGATTATGATTCCCAAGGGGCAGTGGGGGAGTTTCTTCGTAAGACAAGAAAGCTGAGAACATTACCAGACATTGTCCAGGAAGCAACCCAAAGCACAAGTAATGTTGTGGCAAACCTAGCCAATAAAATTGATATGACAAATGAAAATCTGGATGAACTACGATACAAATACAATGAGAATGCACTGTCATTAAGTAGGATGCTAGAAGAAAAAGACAGGCTACATAATGCCTTTGTTGAAGAATCAAAGAGGCTGCAGATGATGTCACAAGATAATGTTTGGAGAATAATAGAAGAGCGAGAGAAACTGAATGATGAGTTGGATGCTAAGAAAAGGGAACTGGATTCCCTGAGAAAAGAATTAAACAAACATGAAGCACTAACTGAATGTGAGAGGCAAAAACTTGACGAGGATAAAAAGAAGGTAACATGCCACATTGTTACAGTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003725 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010468 GO:0010569 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

373

Amino Acids

42.81

Weight (kDa)

5.89

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-XS	PF03470	46 - 88	1.1e-20	XS zinc finger domain
XS	PF03468	117 - 227	9.8e-34	XS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15910 AT4G00380 AT4G00380 AT4G00380
fragaria_vesca	FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780
malus_domestica	MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1
prunus_persica	Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621
rosa_laevigata	RLG00000019313 RLG00000019320
rosa_multiflora	Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111310 Rroxscaffold_2G00111340
rosa_rugosa	Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800
rosa_samantha	Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500
rosa_wichuraiana	Rw2G029490 Rw2G029510 Rw4G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AccB1I	GGYRCC	1 cut(s)	125
AccB7I	CCANNNNNTGG	2 cut(s)	409, 413
AccII	CGCG	2 cut(s)	659, 661
AclWI	GGATC	1 cut(s)	189
AfaI	GTAC	3 cut(s)	80, 176, 480
AfiI	CCNNNNNNNGG	5 cut(s)	271, 310, 374, 409, 413
AgsI	TTSAA	5 cut(s)	106, 191, 572, 639, 908
AjnI	CCWGG	2 cut(s)	631, 744
AjuI	GAANNNNNNNTTGG	2 cut(s)	971, 1003
AluBI	AGCT	2 cut(s)	21, 721
AluI	AGCT	2 cut(s)	21, 721
Alw21I	GWGCWC	1 cut(s)	609
AlwI	GGATC	1 cut(s)	189
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	2 cut(s)	243, 365
ApeKI	GCWGC	2 cut(s)	509, 922
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
Asp700I	GAANNNNTTC	2 cut(s)	454, 548
AspLEI	GCGC	2 cut(s)	659, 661
AspS9I	GGNCC	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	609
BbvI	GCAGC	2 cut(s)	521, 909
BccI	CCATC	1 cut(s)	407
BciT130I	CCWGG	2 cut(s)	633, 746
BfaI	CTAG	2 cut(s)	785, 872
BfmI	CTRYAG	4 cut(s)	16, 471, 561, 923
BisI	GCNGC	2 cut(s)	510, 923
BlsI	GCNGC	2 cut(s)	511, 924
Bme1390I	CCNGG	2 cut(s)	633, 746
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	3 cut(s)	117, 127, 315
BmrFI	CCNGG	2 cut(s)	633, 746
BmsI	GCATC	3 cut(s)	125, 858, 982
BoxI	GACNNNNGTC	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	368, 682
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	5 cut(s)	271, 310, 374, 409, 413
Bse1I	ACTGG	5 cut(s)	288, 379, 439, 614, 1014
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	2 cut(s)	633, 746
BseDI	CCNNGG	2 cut(s)	368, 682
BseGI	GGATG	4 cut(s)	418, 826, 873, 997
BseLI	CCNNNNNNNGG	5 cut(s)	271, 310, 374, 409, 413
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	4 cut(s)	42, 145, 713, 1010
BseNI	ACTGG	5 cut(s)	288, 379, 439, 614, 1014
BsePI	GCGCGC	1 cut(s)	657
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	521, 909
BsgI	GTGCAG	1 cut(s)	312
Bsh1236I	CGCG	2 cut(s)	659, 661
BshFI	GGCC	2 cut(s)	245, 367
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	609
BsiSI	CCGG	1 cut(s)	311
BsiWI	CGTACG	1 cut(s)	78
BslI	CCNNNNNNNGG	5 cut(s)	271, 310, 374, 409, 413
BsmI	GAATGC	2 cut(s)	619, 853
BsnI	GGCC	2 cut(s)	245, 367
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp143I	GATC	4 cut(s)	54, 181, 295, 352
BspANI	GGCC	2 cut(s)	245, 367
BspCNI	CTCAG	4 cut(s)	43, 144, 714, 1011
BspFNI	CGCG	2 cut(s)	659, 661
BspLI	GGNNCC	3 cut(s)	117, 127, 315
BspMAI	CTGCAG	1 cut(s)	927
BspPI	GGATC	1 cut(s)	189
BspQI	GCTCTTC	1 cut(s)	957
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	15
BsrI	ACTGG	5 cut(s)	288, 379, 439, 614, 1014
BssECI	CCNNGG	2 cut(s)	368, 682
BssHII	GCGCGC	1 cut(s)	657
BssMI	GATC	4 cut(s)	54, 181, 295, 352
BssT1I	CCWWGG	2 cut(s)	368, 682
Bst2UI	CCWGG	2 cut(s)	633, 746
Bst4CI	ACNGT	3 cut(s)	78, 855, 1114
Bst6I	CTCTTC	2 cut(s)	492, 957
BstC8I	GCNNGC	3 cut(s)	151, 404, 659
BstDEI	CTNAG	6 cut(s)	51, 131, 259, 722, 996, 1019
BstF5I	GGATG	4 cut(s)	418, 826, 873, 997
BstFNI	CGCG	2 cut(s)	659, 661
BstHHI	GCGC	2 cut(s)	659, 661
BstKTI	GATC	4 cut(s)	57, 184, 298, 355
BstMBI	GATC	4 cut(s)	54, 181, 295, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	515, 785
BstNI	CCWGG	2 cut(s)	633, 746
BstNSI	RCATGY	2 cut(s)	197, 1101
BstPAI	GACNNNNGTC	1 cut(s)	377
BstSCI	CCNGG	2 cut(s)	631, 744
BstSFI	CTRYAG	4 cut(s)	16, 471, 561, 923
BstUI	CGCG	2 cut(s)	659, 661
BstV1I	GCAGC	2 cut(s)	521, 909
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	245, 367
BtsCI	GGATG	4 cut(s)	418, 826, 873, 997
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	7 cut(s)	49, 64, 295, 432, 607, 696, 851
Cac8I	GCNNGC	3 cut(s)	151, 404, 659
CaiI	CAGNNNCTG	1 cut(s)	518
CfoI	GCGC	2 cut(s)	659, 661
Cfr13I	GGNCC	1 cut(s)	116
CseI	GACGC	2 cut(s)	14, 296
Csp6I	GTAC	3 cut(s)	79, 175, 479
CviAII	CATG	3 cut(s)	194, 1040, 1098
CviQI	GTAC	3 cut(s)	79, 175, 479
DdeI	CTNAG	6 cut(s)	51, 131, 259, 722, 996, 1019
DpnI	GATC	4 cut(s)	56, 183, 297, 354
DpnII	GATC	4 cut(s)	54, 181, 295, 352
Eam1104I	CTCTTC	2 cut(s)	492, 957
EarI	CTCTTC	2 cut(s)	492, 957
Eco130I	CCWWGG	2 cut(s)	368, 682
Eco32I	GATATC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	631, 744
EcoRV	GATATC	1 cut(s)	40
EcoT14I	CCWWGG	2 cut(s)	368, 682
ErhI	CCWWGG	2 cut(s)	368, 682
FaeI	CATG	3 cut(s)	197, 1043, 1101
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FatI	CATG	3 cut(s)	193, 1039, 1097
Fnu4HI	GCNGC	2 cut(s)	510, 923
FokI	GGATG	4 cut(s)	425, 833, 880, 1004
Fsp4HI	GCNGC	2 cut(s)	510, 923
FspBI	CTAG	2 cut(s)	785, 872
GlaI	GCGC	2 cut(s)	658, 660
GluI	GCNGC	2 cut(s)	510, 923
HaeIII	GGCC	2 cut(s)	245, 367
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	2 cut(s)	14, 296
HhaI	GCGC	2 cut(s)	659, 661
Hin1II	CATG	3 cut(s)	197, 1043, 1101
Hin6I	GCGC	2 cut(s)	657, 659
HinP1I	GCGC	2 cut(s)	657, 659
HinfI	GANTC	5 cut(s)	32, 47, 677, 911, 1013
HpaII	CCGG	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188I	TCNGA	5 cut(s)	25, 37, 52, 134, 667
Hpy188III	TCNNGA	2 cut(s)	553, 818
Hpy8I	GTNNAC	1 cut(s)	467
HpyAV	CCTTC	2 cut(s)	271, 1084
HpyCH4III	ACNGT	3 cut(s)	78, 855, 1114
HpyCH4V	TGCA	4 cut(s)	293, 617, 851, 925
HpyF10VI	GCNNNNNNNGC	2 cut(s)	515, 785
HpyF3I	CTNAG	6 cut(s)	51, 131, 259, 722, 996, 1019
Hsp92II	CATG	3 cut(s)	197, 1043, 1101
HspAI	GCGC	2 cut(s)	657, 659
Kzo9I	GATC	4 cut(s)	54, 181, 295, 352
LguI	GCTCTTC	1 cut(s)	957
LmnI	GCTCC	1 cut(s)	319
Lsp1109I	GCAGC	2 cut(s)	521, 909
LweI	GCATC	3 cut(s)	125, 858, 982
MaeI	CTAG	2 cut(s)	785, 872
MaeIII	GTNAC	6 cut(s)	59, 87, 593, 933, 1093, 1108
MalI	GATC	4 cut(s)	56, 183, 297, 354
MboI	GATC	4 cut(s)	54, 181, 295, 352
MboII	GAAGA	7 cut(s)	41, 169, 509, 695, 887, 920, 974
MfeI	CAATTG	1 cut(s)	589
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	609
MluCI	AATT	4 cut(s)	422, 589, 795, 1028
MmeI	TCCRAC	1 cut(s)	969
MnlI	CCTC	6 cut(s)	140, 331, 493, 912, 1056, 1072
MroXI	GAANNNNTTC	2 cut(s)	454, 548
MseI	TTAA	4 cut(s)	333, 860, 1031, 1120
MslI	CAYNNNNRTG	1 cut(s)	612
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	2 cut(s)	633, 746
MunI	CAATTG	1 cut(s)	589
Mva1269I	GAATGC	2 cut(s)	619, 853
MvaI	CCWGG	2 cut(s)	633, 746
MvnI	CGCG	2 cut(s)	659, 661
MwoI	GCNNNNNNNGC	2 cut(s)	515, 785
NdeII	GATC	4 cut(s)	54, 181, 295, 352
NlaIII	CATG	3 cut(s)	197, 1043, 1101
NlaIV	GGNNCC	3 cut(s)	117, 127, 315
NmuCI	GTSAC	3 cut(s)	59, 593, 933
NspI	RCATGY	2 cut(s)	197, 1101
PauI	GCGCGC	1 cut(s)	657
PciSI	GCTCTTC	1 cut(s)	957
PctI	GAATGC	2 cut(s)	619, 853
PdmI	GAANNNNTTC	2 cut(s)	454, 548
PfeI	GAWTC	5 cut(s)	32, 47, 677, 911, 1013
Pfl23II	CGTACG	1 cut(s)	78
PflFI	GACNNNGTC	1 cut(s)	740
PflMI	CCANNNNNTGG	2 cut(s)	409, 413
PfoI	TCCNGGA	1 cut(s)	744
PkrI	GCNGC	2 cut(s)	511, 924
PpuMI	RGGWCCY	1 cut(s)	116
PshAI	GACNNNNGTC	1 cut(s)	377
PsiI	TTATAA	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	116
Psp6I	CCWGG	2 cut(s)	631, 744
PspGI	CCWGG	2 cut(s)	631, 744
PspLI	CGTACG	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	117, 127, 315
PspPI	GGNCC	1 cut(s)	116
PspPPI	RGGWCCY	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	927
PstNI	CAGNNNCTG	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	181
PsyI	GACNNNGTC	1 cut(s)	740
PteI	GCGCGC	1 cut(s)	657
RsaI	GTAC	3 cut(s)	80, 176, 480
RsaNI	GTAC	3 cut(s)	79, 175, 479
RseI	CAYNNNNRTG	1 cut(s)	612
SapI	GCTCTTC	1 cut(s)	957
SaqAI	TTAA	4 cut(s)	333, 860, 1031, 1120
SatI	GCNGC	2 cut(s)	510, 923
Sau3AI	GATC	4 cut(s)	54, 181, 295, 352
Sau96I	GGNCC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	633, 746
SduI	GDGCHC	1 cut(s)	609
SetI	ASST	8 cut(s)	23, 217, 255, 328, 472, 723, 786, 1095
SfaNI	GCATC	3 cut(s)	125, 858, 982
SfcI	CTRYAG	4 cut(s)	16, 471, 561, 923
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	612
Sse9I	AATT	4 cut(s)	422, 589, 795, 1028
SspI	AATATT	1 cut(s)	643
SspMI	CTAG	2 cut(s)	785, 872
StyD4I	CCNGG	2 cut(s)	631, 744
StyI	CCWWGG	2 cut(s)	368, 682
TaaI	ACNGT	3 cut(s)	78, 855, 1114
TasI	AATT	4 cut(s)	422, 589, 795, 1028
TatI	WGTACW	2 cut(s)	174, 478
TfiI	GAWTC	5 cut(s)	32, 47, 677, 911, 1013
Tru1I	TTAA	4 cut(s)	333, 860, 1031, 1120
Tru9I	TTAA	4 cut(s)	333, 860, 1031, 1120
TscAI	CASTG	7 cut(s)	49, 64, 295, 439, 614, 696, 858
TseFI	GTSAC	3 cut(s)	59, 593, 933
TseI	GCWGC	2 cut(s)	509, 922
Tsp45I	GTSAC	3 cut(s)	59, 593, 933
TspDTI	ATGAA	6 cut(s)	42, 510, 571, 825, 837, 1056
TspGWI	ACGGA	1 cut(s)	612
TspRI	CASTG	7 cut(s)	49, 64, 295, 439, 614, 696, 858
Tth111I	GACNNNGTC	1 cut(s)	740
Van91I	CCANNNNNTGG	2 cut(s)	409, 413
VpaK11BI	GGWCC	1 cut(s)	116
XceI	RCATGY	2 cut(s)	197, 1101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410
XmnI	GAANNNNTTC	2 cut(s)	454, 548
XspI	CTAG	2 cut(s)	785, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.