Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002080

Physical Location & Seq

Genomic Coordinates Reverse (-)

33019790 .. 33022785

Gene Structure 2996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG275800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGAAATTGAAGAATTAAATGGTAAATTAGAGGTGATGAAGCATCTTGGGGATGAAGATGATGAAGCCGTTAAAAAGAAGATTGAAGACATGAATCAAGAGTTGGGGGAAAAAGTTAAAGAGCTTGAGCATTTAGAAATACTGAATCAAACTCTGATCACCAAAGAGCGCCAGAGCAATGATGAGTTACAAGAAGCTCGTAAAGTGTTAATAGCAAGCATTGAGCGCTATAGGATTTGTCTATGCAAAAATAGCAGGCTCGCAAGATTTGAATTGCTGAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003725 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010468 GO:0010569 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

95

Amino Acids

11.22

Weight (kDa)

5.3

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15910 AT4G00380 AT4G00380 AT4G00380
fragaria_vesca	FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780
malus_domestica	MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1
prunus_persica	Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621
rosa_laevigata	RLG00000019313 RLG00000019320
rosa_multiflora	Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111310 Rroxscaffold_2G00111340
rosa_rugosa	Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800
rosa_samantha	Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500
rosa_wichuraiana	Rw2G029490 Rw2G029510 Rw4G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfeI	AGCGCT	1 cut(s)	227
AgsI	TTSAA	3 cut(s)	11, 86, 272
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	2 cut(s)	124, 197
AluI	AGCT	2 cut(s)	124, 197
Aor51HI	AGCGCT	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	171, 228
AsuHPI	GGTGA	2 cut(s)	46, 151
BbsI	GAAGAC	1 cut(s)	93
BceAI	ACGGC	1 cut(s)	53
BclI	TGATCA	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	229
BfoI	RGCGCY	2 cut(s)	172, 229
BmsI	GCATC	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	184
BssMI	GATC	1 cut(s)	156
BstC8I	GCNNGC	3 cut(s)	217, 257, 261
BstF5I	GGATG	1 cut(s)	58
BstH2I	RGCGCY	2 cut(s)	172, 229
BstHHI	GCGC	2 cut(s)	171, 228
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 252
BstSFI	CTRYAG	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	58
Cac8I	GCNNGC	3 cut(s)	217, 257, 261
CfoI	GCGC	2 cut(s)	171, 228
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	4 cut(s)	68, 124, 197, 259
CviKI_1	RGCY	4 cut(s)	68, 124, 197, 259
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eco47III	AGCGCT	1 cut(s)	227
FaeI	CATG	1 cut(s)	94
FaiI	YATR	3 cut(s)	92, 231, 244
FatI	CATG	1 cut(s)	90
FbaI	TGATCA	1 cut(s)	156
FokI	GGATG	1 cut(s)	65
GlaI	GCGC	2 cut(s)	170, 227
HaeII	RGCGCY	2 cut(s)	172, 229
HhaI	GCGC	2 cut(s)	171, 228
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	2 cut(s)	169, 226
HinP1I	GCGC	2 cut(s)	169, 226
HinfI	GANTC	2 cut(s)	94, 145
HphI	GGTGA	2 cut(s)	46, 151
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	1 cut(s)	98
HpyCH4V	TGCA	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 252
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	2 cut(s)	169, 226
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	156
LpnPI	CCDG	2 cut(s)	185, 241
LweI	GCATC	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	4 cut(s)	23, 68, 91, 98
MluCI	AATT	4 cut(s)	6, 14, 26, 272
MnlI	CCTC	1 cut(s)	25
MseI	TTAA	4 cut(s)	17, 72, 117, 209
MwoI	GCNNNNNNNGC	2 cut(s)	225, 252
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	94, 145
SaqAI	TTAA	4 cut(s)	17, 72, 117, 209
Sau3AI	GATC	1 cut(s)	156
SetI	ASST	3 cut(s)	36, 126, 199
SfaNI	GCATC	1 cut(s)	52
SfcI	CTRYAG	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	4 cut(s)	6, 14, 26, 272
TasI	AATT	4 cut(s)	6, 14, 26, 272
TfiI	GAWTC	2 cut(s)	94, 145
Tru1I	TTAA	4 cut(s)	17, 72, 117, 209
Tru9I	TTAA	4 cut(s)	17, 72, 117, 209
TspDTI	ATGAA	4 cut(s)	53, 69, 78, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.