XH domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G15910 AT4G00380 AT4G00380 AT4G00380 |
| fragaria_vesca | FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 |
| malus_domestica | MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1 |
| prunus_persica | Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621 |
| rosa_laevigata | RLG00000019313 RLG00000019320 |
| rosa_multiflora | Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021 |
| rosa_roxburghii | Rroxscaffold_2G00111310 Rroxscaffold_2G00111340 |
| rosa_rugosa | Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800 |
| rosa_samantha | Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500 |
| rosa_wichuraiana | Rw2G029490 Rw2G029510 Rw4G020140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1655 |
| Acc36I | ACCTGC | 1 cut(s) | 1454 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 407 |
| AccII | CGCG | 1 cut(s) | 702 |
| AciI | CCGC | 2 cut(s) | 922, 1139 |
| AcoI | YGGCCR | 2 cut(s) | 252, 771 |
| AcsI | RAATTY | 1 cut(s) | 948 |
| AcuI | CTGAAG | 3 cut(s) | 450, 1736, 1868 |
| AcvI | CACGTG | 1 cut(s) | 656 |
| AfaI | GTAC | 1 cut(s) | 827 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 371, 407, 703 |
| AflII | CTTAAG | 1 cut(s) | 1870 |
| AgsI | TTSAA | 8 cut(s) | 169, 487, 578, 869, 902, 1166, 1259, 1322 |
| AjnI | CCWGG | 3 cut(s) | 625, 738, 1010 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 965, 997, 1226, 1258, 1334, 1366 |
| AluBI | AGCT | 9 cut(s) | 12, 503, 715, 749, 883, 1066, 1372, 1445, 1705 |
| AluI | AGCT | 9 cut(s) | 12, 503, 715, 749, 883, 1066, 1372, 1445, 1705 |
| Alw21I | GWGCWC | 1 cut(s) | 655 |
| Alw26I | GTCTC | 3 cut(s) | 927, 1150, 1810 |
| Alw44I | GTGCAC | 1 cut(s) | 651 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 728 |
| Ama87I | CYCGRG | 1 cut(s) | 1295 |
| AoxI | GGCC | 7 cut(s) | 234, 252, 362, 680, 771, 1587, 1729 |
| ApaLI | GTGCAC | 1 cut(s) | 651 |
| ApeKI | GCWGC | 3 cut(s) | 503, 746, 919 |
| ApoI | RAATTY | 1 cut(s) | 948 |
| AseI | ATTAAT | 2 cut(s) | 1457, 1686 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1102 |
| AspLEI | GCGC | 2 cut(s) | 303, 1419 |
| AspS9I | GGNCC | 5 cut(s) | 107, 172, 680, 1300, 1729 |
| AsuC2I | CCSGG | 1 cut(s) | 142 |
| AsuHPI | GGTGA | 3 cut(s) | 1294, 1399, 1529 |
| AsuII | TTCGAA | 1 cut(s) | 943 |
| AvaI | CYCGRG | 1 cut(s) | 1295 |
| AvaII | GGWCC | 3 cut(s) | 107, 172, 1300 |
| BaeGI | GKGCMC | 1 cut(s) | 655 |
| BalI | TGGCCA | 2 cut(s) | 254, 773 |
| BauI | CACGAG | 1 cut(s) | 930 |
| BbrPI | CACGTG | 1 cut(s) | 656 |
| Bbv12I | GWGCWC | 1 cut(s) | 655 |
| BbvI | GCAGC | 3 cut(s) | 490, 758, 931 |
| BccI | CCATC | 4 cut(s) | 263, 401, 679, 1658 |
| BceAI | ACGGC | 1 cut(s) | 497 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 898, 932 |
| BciT130I | CCWGG | 3 cut(s) | 627, 740, 1012 |
| BclI | TGATCA | 1 cut(s) | 1090 |
| BcnI | CCSGG | 1 cut(s) | 142 |
| BcoDI | GTCTC | 3 cut(s) | 927, 1150, 1810 |
| BfaI | CTAG | 3 cut(s) | 275, 429, 779 |
| BfmI | CTRYAG | 1 cut(s) | 7 |
| BfoI | RGCGCY | 2 cut(s) | 304, 1420 |
| BfrI | CTTAAG | 1 cut(s) | 1870 |
| BfuAI | ACCTGC | 1 cut(s) | 1454 |
| BglII | AGATCT | 1 cut(s) | 349 |
| BisI | GCNGC | 3 cut(s) | 504, 747, 920 |
| BlsI | GCNGC | 3 cut(s) | 505, 748, 921 |
| Bme1390I | CCNGG | 4 cut(s) | 142, 627, 740, 1012 |
| Bme18I | GGWCC | 3 cut(s) | 107, 172, 1300 |
| BmeT110I | CYCGRG | 1 cut(s) | 1295 |
| BmgT120I | GGNCC | 5 cut(s) | 107, 172, 680, 1300, 1729 |
| BmiI | GGNNCC | 3 cut(s) | 108, 1301, 1730 |
| BmrFI | CCNGG | 4 cut(s) | 142, 627, 740, 1012 |
| BmsI | GCATC | 9 cut(s) | 116, 384, 852, 906, 1180, 1219, 1300, 1303, 1648 |
| BpmI | CTGGAG | 1 cut(s) | 1033 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1674 |
| Bpu14I | TTCGAA | 1 cut(s) | 943 |
| BpuEI | CTTGAG | 5 cut(s) | 616, 1174, 1229, 1394, 1874 |
| BpuMI | CCSGG | 1 cut(s) | 142 |
| BsaAI | YACGTR | 1 cut(s) | 656 |
| BsaBI | GATNNNNATC | 2 cut(s) | 666, 1638 |
| BsaJI | CCNNGG | 5 cut(s) | 249, 365, 513, 676, 1122 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 26, 77, 107 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 371, 407, 703 |
| Bse1I | ACTGG | 4 cut(s) | 279, 376, 440, 1164 |
| Bse3DI | GCAATG | 2 cut(s) | 243, 1432 |
| Bse8I | GATNNNNATC | 2 cut(s) | 666, 1638 |
| BseBI | CCWGG | 3 cut(s) | 627, 740, 1012 |
| BseDI | CCNNGG | 5 cut(s) | 249, 365, 513, 676, 1122 |
| BseGI | GGATG | 7 cut(s) | 412, 820, 867, 1147, 1195, 1234, 1639 |
| BseJI | GATNNNNATC | 2 cut(s) | 666, 1638 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 371, 407, 703 |
| BseMI | GCAATG | 2 cut(s) | 243, 1432 |
| BseMII | CTCAG | 3 cut(s) | 33, 1038, 1688 |
| BseNI | ACTGG | 4 cut(s) | 279, 376, 440, 1164 |
| BseRI | GAGGAG | 1 cut(s) | 1736 |
| BseSI | GKGCMC | 1 cut(s) | 655 |
| BseXI | GCAGC | 3 cut(s) | 490, 758, 931 |
| BsgI | GTGCAG | 2 cut(s) | 912, 1604 |
| Bsh1236I | CGCG | 1 cut(s) | 702 |
| BshFI | GGCC | 7 cut(s) | 236, 254, 364, 682, 773, 1589, 1731 |
| BsiHKAI | GWGCWC | 1 cut(s) | 655 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1295 |
| BsiSI | CCGG | 1 cut(s) | 141 |
| BslFI | GGGAC | 2 cut(s) | 703, 1313 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 371, 407, 703 |
| BsmAI | GTCTC | 3 cut(s) | 927, 1150, 1810 |
| BsmFI | GGGAC | 2 cut(s) | 703, 1313 |
| BsmI | GAATGC | 3 cut(s) | 556, 613, 1675 |
| BsnI | GGCC | 7 cut(s) | 236, 254, 364, 682, 773, 1589, 1731 |
| BsoBI | CYCGRG | 1 cut(s) | 1295 |
| Bsp119I | TTCGAA | 1 cut(s) | 943 |
| Bsp1286I | GDGCHC | 1 cut(s) | 655 |
| Bsp143I | GATC | 5 cut(s) | 45, 349, 1090, 1490, 1519 |
| Bsp68I | TCGCGA | 1 cut(s) | 702 |
| BspACI | CCGC | 2 cut(s) | 922, 1139 |
| BspANI | GGCC | 7 cut(s) | 236, 254, 364, 682, 773, 1589, 1731 |
| BspCNI | CTCAG | 3 cut(s) | 34, 1039, 1687 |
| BspFNI | CGCG | 1 cut(s) | 702 |
| BspLI | GGNNCC | 3 cut(s) | 108, 1301, 1730 |
| BspMI | ACCTGC | 1 cut(s) | 1454 |
| BspQI | GCTCTTC | 2 cut(s) | 489, 1161 |
| BspT104I | TTCGAA | 1 cut(s) | 943 |
| BspTI | CTTAAG | 1 cut(s) | 1870 |
| BsrDI | GCAATG | 2 cut(s) | 243, 1432 |
| BsrI | ACTGG | 4 cut(s) | 279, 376, 440, 1164 |
| BssECI | CCNNGG | 5 cut(s) | 249, 365, 513, 676, 1122 |
| BssMI | GATC | 5 cut(s) | 45, 349, 1090, 1490, 1519 |
| BssSI | CACGAG | 1 cut(s) | 930 |
| BssT1I | CCWWGG | 3 cut(s) | 249, 365, 676 |
| Bst2BI | CACGAG | 1 cut(s) | 930 |
| Bst2UI | CCWGG | 3 cut(s) | 627, 740, 1012 |
| Bst4CI | ACNGT | 3 cut(s) | 587, 724, 1660 |
| Bst6I | CTCTTC | 6 cut(s) | 15, 182, 489, 864, 1161, 1254 |
| BstAFI | CTTAAG | 1 cut(s) | 1870 |
| BstBAI | YACGTR | 1 cut(s) | 656 |
| BstBI | TTCGAA | 1 cut(s) | 943 |
| BstC8I | GCNNGC | 3 cut(s) | 501, 775, 1587 |
| BstDEI | CTNAG | 7 cut(s) | 42, 122, 716, 821, 990, 1047, 1674 |
| BstDSI | CCRYGG | 2 cut(s) | 513, 1122 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 701 |
| BstF5I | GGATG | 7 cut(s) | 412, 820, 867, 1147, 1195, 1234, 1639 |
| BstFNI | CGCG | 1 cut(s) | 702 |
| BstH2I | RGCGCY | 2 cut(s) | 304, 1420 |
| BstHHI | GCGC | 2 cut(s) | 303, 1419 |
| BstKTI | GATC | 5 cut(s) | 48, 352, 1093, 1493, 1522 |
| BstMAI | GTCTC | 3 cut(s) | 927, 1150, 1810 |
| BstMBI | GATC | 5 cut(s) | 45, 349, 1090, 1490, 1519 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 284, 509, 779, 1057 |
| BstNI | CCWGG | 3 cut(s) | 627, 740, 1012 |
| BstNSI | RCATGY | 2 cut(s) | 188, 510 |
| BstSCI | CCNGG | 4 cut(s) | 140, 625, 738, 1010 |
| BstSFI | CTRYAG | 1 cut(s) | 7 |
| BstSLI | GKGCMC | 1 cut(s) | 655 |
| BstUI | CGCG | 1 cut(s) | 702 |
| BstV1I | GCAGC | 3 cut(s) | 490, 758, 931 |
| BstX2I | RGATCY | 1 cut(s) | 349 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 262 |
| BstYI | RGATCY | 1 cut(s) | 349 |
| BsuRI | GGCC | 7 cut(s) | 236, 254, 364, 682, 773, 1589, 1731 |
| BtgI | CCRYGG | 2 cut(s) | 513, 1122 |
| BtsCI | GGATG | 7 cut(s) | 412, 820, 867, 1147, 1195, 1234, 1639 |
| BtsIMutI | CAGTG | 3 cut(s) | 286, 1044, 1844 |
| BtuMI | TCGCGA | 1 cut(s) | 702 |
| BveI | ACCTGC | 1 cut(s) | 1454 |
| Cac8I | GCNNGC | 3 cut(s) | 501, 775, 1587 |
| CaiI | CAGNNNCTG | 1 cut(s) | 728 |
| CfoI | GCGC | 2 cut(s) | 303, 1419 |
| Cfr13I | GGNCC | 5 cut(s) | 107, 172, 680, 1300, 1729 |
| Csp6I | GTAC | 1 cut(s) | 826 |
| CviAII | CATG | 6 cut(s) | 185, 507, 590, 796, 1733, 1905 |
| CviQI | GTAC | 1 cut(s) | 826 |
| DdeI | CTNAG | 7 cut(s) | 42, 122, 716, 821, 990, 1047, 1674 |
| DpnI | GATC | 5 cut(s) | 47, 351, 1092, 1492, 1521 |
| DpnII | GATC | 5 cut(s) | 45, 349, 1090, 1490, 1519 |
| EaeI | YGGCCR | 2 cut(s) | 252, 771 |
| Eam1104I | CTCTTC | 6 cut(s) | 15, 182, 489, 864, 1161, 1254 |
| EarI | CTCTTC | 6 cut(s) | 15, 182, 489, 864, 1161, 1254 |
| EciI | GGCGGA | 1 cut(s) | 1154 |
| Eco130I | CCWWGG | 3 cut(s) | 249, 365, 676 |
| Eco147I | AGGCCT | 1 cut(s) | 1589 |
| Eco47I | GGWCC | 3 cut(s) | 107, 172, 1300 |
| Eco57I | CTGAAG | 3 cut(s) | 450, 1736, 1868 |
| Eco72I | CACGTG | 1 cut(s) | 656 |
| Eco88I | CYCGRG | 1 cut(s) | 1295 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 701 |
| EcoO109I | RGGNCCY | 2 cut(s) | 107, 172 |
| EcoRII | CCWGG | 3 cut(s) | 625, 738, 1010 |
| EcoT14I | CCWWGG | 3 cut(s) | 249, 365, 676 |
| ErhI | CCWWGG | 3 cut(s) | 249, 365, 676 |
| FaeI | CATG | 6 cut(s) | 188, 510, 593, 799, 1736, 1908 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 161, 193 |
| FaqI | GGGAC | 2 cut(s) | 703, 1313 |
| FatI | CATG | 6 cut(s) | 184, 506, 589, 795, 1732, 1904 |
| FauNDI | CATATG | 1 cut(s) | 70 |
| FbaI | TGATCA | 1 cut(s) | 1090 |
| Fnu4HI | GCNGC | 3 cut(s) | 504, 747, 920 |
| FokI | GGATG | 7 cut(s) | 419, 827, 874, 1154, 1202, 1241, 1626 |
| Fsp4HI | GCNGC | 3 cut(s) | 504, 747, 920 |
| FspBI | CTAG | 3 cut(s) | 275, 429, 779 |
| GlaI | GCGC | 2 cut(s) | 302, 1418 |
| GluI | GCNGC | 3 cut(s) | 504, 747, 920 |
| GsuI | CTGGAG | 1 cut(s) | 1033 |
| HaeII | RGCGCY | 2 cut(s) | 304, 1420 |
| HaeIII | GGCC | 7 cut(s) | 236, 254, 364, 682, 773, 1589, 1731 |
| HapII | CCGG | 1 cut(s) | 141 |
| HhaI | GCGC | 2 cut(s) | 303, 1419 |
| Hin1II | CATG | 6 cut(s) | 188, 510, 593, 799, 1736, 1908 |
| Hin6I | GCGC | 2 cut(s) | 301, 1417 |
| HinP1I | GCGC | 2 cut(s) | 301, 1417 |
| HincII | GTYRAC | 1 cut(s) | 1366 |
| HindII | GTYRAC | 1 cut(s) | 1366 |
| HindIII | AAGCTT | 1 cut(s) | 1064 |
| HinfI | GANTC | 8 cut(s) | 23, 38, 394, 425, 986, 1007, 1385, 1711 |
| HpaII | CCGG | 1 cut(s) | 141 |
| HphI | GGTGA | 3 cut(s) | 1294, 1399, 1529 |
| Hpy166II | GTNNAC | 3 cut(s) | 385, 653, 1366 |
| Hpy188I | TCNGA | 9 cut(s) | 16, 28, 43, 469, 730, 1095, 1503, 1716, 1810 |
| Hpy188III | TCNNGA | 8 cut(s) | 429, 547, 701, 812, 1153, 1523, 1676, 1708 |
| Hpy8I | GTNNAC | 3 cut(s) | 385, 653, 1366 |
| HpyAV | CCTTC | 9 cut(s) | 226, 474, 701, 707, 1546, 1711, 1823, 1827, 1843 |
| HpyCH4III | ACNGT | 3 cut(s) | 587, 724, 1660 |
| HpyCH4IV | ACGT | 6 cut(s) | 655, 692, 1033, 1485, 1545, 1821 |
| HpyCH4V | TGCA | 8 cut(s) | 506, 611, 653, 919, 929, 1316, 1551, 1585 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 284, 509, 779, 1057 |
| HpyF3I | CTNAG | 7 cut(s) | 42, 122, 716, 821, 990, 1047, 1674 |
| HpySE526I | ACGT | 6 cut(s) | 655, 692, 1033, 1485, 1545, 1821 |
| Hsp92II | CATG | 6 cut(s) | 188, 510, 593, 799, 1736, 1908 |
| HspAI | GCGC | 2 cut(s) | 301, 1417 |
| Ksp22I | TGATCA | 1 cut(s) | 1090 |
| Kzo9I | GATC | 5 cut(s) | 45, 349, 1090, 1490, 1519 |
| LguI | GCTCTTC | 2 cut(s) | 489, 1161 |
| LmnI | GCTCC | 5 cut(s) | 17, 331, 1014, 1126, 1607 |
| Lsp1109I | GCAGC | 3 cut(s) | 490, 758, 931 |
| LweI | GCATC | 9 cut(s) | 116, 384, 852, 906, 1180, 1219, 1300, 1303, 1648 |
| MaeI | CTAG | 3 cut(s) | 275, 429, 779 |
| MaeII | ACGT | 6 cut(s) | 655, 692, 1033, 1485, 1545, 1821 |
| MaeIII | GTNAC | 2 cut(s) | 1434, 1753 |
| MalI | GATC | 5 cut(s) | 47, 351, 1092, 1492, 1521 |
| MboI | GATC | 5 cut(s) | 45, 349, 1090, 1490, 1519 |
| MflI | RGATCY | 1 cut(s) | 349 |
| MhlI | GDGCHC | 1 cut(s) | 655 |
| MlsI | TGGCCA | 2 cut(s) | 254, 773 |
| MluCI | AATT | 9 cut(s) | 789, 948, 973, 1022, 1102, 1274, 1349, 1454, 1683 |
| MluNI | TGGCCA | 2 cut(s) | 254, 773 |
| MlyI | GAGTC | 4 cut(s) | 32, 47, 403, 995 |
| MmeI | TCCRAC | 6 cut(s) | 6, 205, 963, 1206, 1224, 1461 |
| Mox20I | TGGCCA | 2 cut(s) | 254, 773 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1102 |
| MscI | TGGCCA | 2 cut(s) | 254, 773 |
| MseI | TTAA | 9 cut(s) | 854, 1025, 1196, 1457, 1647, 1686, 1763, 1773, 1871 |
| MslI | CAYNNNNRTG | 1 cut(s) | 380 |
| Msp20I | TGGCCA | 2 cut(s) | 254, 773 |
| MspA1I | CMGCKG | 2 cut(s) | 503, 922 |
| MspCI | CTTAAG | 1 cut(s) | 1870 |
| MspI | CCGG | 1 cut(s) | 141 |
| MspR9I | CCNGG | 4 cut(s) | 142, 627, 740, 1012 |
| Mva1269I | GAATGC | 3 cut(s) | 556, 613, 1675 |
| MvaI | CCWGG | 3 cut(s) | 627, 740, 1012 |
| MvnI | CGCG | 1 cut(s) | 702 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 284, 509, 779, 1057 |
| NciI | CCSGG | 1 cut(s) | 142 |
| NdeI | CATATG | 1 cut(s) | 70 |
| NdeII | GATC | 5 cut(s) | 45, 349, 1090, 1490, 1519 |
| NlaIII | CATG | 6 cut(s) | 188, 510, 593, 799, 1736, 1908 |
| NlaIV | GGNNCC | 3 cut(s) | 108, 1301, 1730 |
| NruI | TCGCGA | 1 cut(s) | 702 |
| NspI | RCATGY | 2 cut(s) | 188, 510 |
| NspV | TTCGAA | 1 cut(s) | 943 |
| PceI | AGGCCT | 1 cut(s) | 1589 |
| PciSI | GCTCTTC | 2 cut(s) | 489, 1161 |
| PctI | GAATGC | 3 cut(s) | 556, 613, 1675 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1102 |
| PfeI | GAWTC | 4 cut(s) | 425, 1007, 1385, 1711 |
| PflFI | GACNNNGTC | 1 cut(s) | 734 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 407 |
| PfoI | TCCNGGA | 2 cut(s) | 738, 1010 |
| PkrI | GCNGC | 3 cut(s) | 505, 748, 921 |
| PleI | GAGTC | 4 cut(s) | 31, 46, 402, 994 |
| PmaCI | CACGTG | 1 cut(s) | 656 |
| PmlI | CACGTG | 1 cut(s) | 656 |
| PpsI | GAGTC | 4 cut(s) | 31, 46, 402, 994 |
| Ppu21I | YACGTR | 1 cut(s) | 656 |
| PpuMI | RGGWCCY | 2 cut(s) | 107, 172 |
| PshBI | ATTAAT | 2 cut(s) | 1457, 1686 |
| PsiI | TTATAA | 1 cut(s) | 1655 |
| Psp5II | RGGWCCY | 2 cut(s) | 107, 172 |
| Psp6I | CCWGG | 3 cut(s) | 625, 738, 1010 |
| PspCI | CACGTG | 1 cut(s) | 656 |
| PspGI | CCWGG | 3 cut(s) | 625, 738, 1010 |
| PspN4I | GGNNCC | 3 cut(s) | 108, 1301, 1730 |
| PspPI | GGNCC | 5 cut(s) | 107, 172, 680, 1300, 1729 |
| PspPPI | RGGWCCY | 2 cut(s) | 107, 172 |
| PstNI | CAGNNNCTG | 1 cut(s) | 728 |
| PsuI | RGATCY | 1 cut(s) | 349 |
| PsyI | GACNNNGTC | 1 cut(s) | 734 |
| PvuII | CAGCTG | 1 cut(s) | 503 |
| RruI | TCGCGA | 1 cut(s) | 702 |
| RsaI | GTAC | 1 cut(s) | 827 |
| RsaNI | GTAC | 1 cut(s) | 826 |
| RseI | CAYNNNNRTG | 1 cut(s) | 380 |
| SapI | GCTCTTC | 2 cut(s) | 489, 1161 |
| SaqAI | TTAA | 9 cut(s) | 854, 1025, 1196, 1457, 1647, 1686, 1763, 1773, 1871 |
| SatI | GCNGC | 3 cut(s) | 504, 747, 920 |
| Sau3AI | GATC | 5 cut(s) | 45, 349, 1090, 1490, 1519 |
| Sau96I | GGNCC | 5 cut(s) | 107, 172, 680, 1300, 1729 |
| SchI | GAGTC | 4 cut(s) | 32, 47, 403, 995 |
| ScrFI | CCNGG | 4 cut(s) | 142, 627, 740, 1012 |
| SduI | GDGCHC | 1 cut(s) | 655 |
| SfaNI | GCATC | 9 cut(s) | 116, 384, 852, 906, 1180, 1219, 1300, 1303, 1648 |
| SfcI | CTRYAG | 1 cut(s) | 7 |
| SfuI | TTCGAA | 1 cut(s) | 943 |
| SinI | GGWCC | 3 cut(s) | 107, 172, 1300 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 380 |
| SmlI | CTYRAG | 6 cut(s) | 631, 1153, 1208, 1373, 1870, 1889 |
| SmoI | CTYRAG | 6 cut(s) | 631, 1153, 1208, 1373, 1870, 1889 |
| Sse9I | AATT | 9 cut(s) | 789, 948, 973, 1022, 1102, 1274, 1349, 1454, 1683 |
| SseBI | AGGCCT | 1 cut(s) | 1589 |
| SsiI | CCGC | 2 cut(s) | 922, 1139 |
| SspMI | CTAG | 3 cut(s) | 275, 429, 779 |
| StuI | AGGCCT | 1 cut(s) | 1589 |
| StyD4I | CCNGG | 4 cut(s) | 140, 625, 738, 1010 |
| StyI | CCWWGG | 3 cut(s) | 249, 365, 676 |
| TaaI | ACNGT | 3 cut(s) | 587, 724, 1660 |
| TaiI | ACGT | 6 cut(s) | 658, 695, 1036, 1488, 1548, 1824 |
| TaqI | TCGA | 2 cut(s) | 943, 1489 |
| TasI | AATT | 9 cut(s) | 789, 948, 973, 1022, 1102, 1274, 1349, 1454, 1683 |
| TfiI | GAWTC | 4 cut(s) | 425, 1007, 1385, 1711 |
| Tru1I | TTAA | 9 cut(s) | 854, 1025, 1196, 1457, 1647, 1686, 1763, 1773, 1871 |
| Tru9I | TTAA | 9 cut(s) | 854, 1025, 1196, 1457, 1647, 1686, 1763, 1773, 1871 |
| TscAI | CASTG | 3 cut(s) | 286, 1051, 1851 |
| TseI | GCWGC | 3 cut(s) | 503, 746, 919 |
| TspDTI | ATGAA | 7 cut(s) | 464, 504, 819, 831, 1301, 1355, 1362 |
| TspGWI | ACGGA | 1 cut(s) | 1111 |
| TspRI | CASTG | 3 cut(s) | 286, 1051, 1851 |
| Tth111I | GACNNNGTC | 1 cut(s) | 734 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 407 |
| Vha464I | CTTAAG | 1 cut(s) | 1870 |
| VneI | GTGCAC | 1 cut(s) | 651 |
| VpaK11BI | GGWCC | 3 cut(s) | 107, 172, 1300 |
| VspI | ATTAAT | 2 cut(s) | 1457, 1686 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 701 |
| XapI | RAATTY | 1 cut(s) | 948 |
| XbaI | TCTAGA | 1 cut(s) | 428 |
| XceI | RCATGY | 2 cut(s) | 188, 510 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 188 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1102 |
| XspI | CTAG | 3 cut(s) | 275, 429, 779 |