Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002080

Physical Location & Seq

Genomic Coordinates Reverse (-)

46660358 .. 46663697

Gene Structure 3340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG346100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAAGCATCTTCGGGATGAAGCCATTAAAAAGAAGATTGAAGACATGAATCAAGAATTGGGGGAAAAAGCTAAAGAGCTTGAGGATTTGGAAATGCAGAATCAAACTCTGATAACCAAAGAGTGCCAGAGCAATGATGAGTTACAAGAAGCTCGTAAAGTGTTAATAGCAGGTTTGCCTGAAATGTTGGCTGGTCAATCTCATATTCGGATTAAAAGATTGGGAGATTTGGATCAAAAGCCCTTCCTCGACACATGCAAGTTAAGATTTCCTCTCGAGGAAGCACAGGTTCAGGCCTTCACTTTATGCTCCCTGTGGCAGGAAAATCTGAAAGATCCAAATTGGCTTCCTTTCAAGGTGATACAGAAAGATGGGAATCATGAGGAAATTATCGATGAGGAGGATGAGAAGCTACAAAATCTGAAGGAAGAGTGGGGAATTAAAATACATGACTGTGTTGTTACAGCTTTGAAAGAGCTTAATGAATACAACCCCAATACGCAAGCGAAAGAGAACATGAGCAGGCAACAGCACAAAACAGACCATGGAATTTGGAGCGTAGATGATTGTGAAACTGCAACTGTGCTAGTGGAAAGCAGGAATTTGAAGCTGTATTGCATGTTTGAGTTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003725 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010468 GO:0010569 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

211

Amino Acids

24.69

Weight (kDa)

4.93

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	72 - 168	1e-37	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15910 AT4G00380 AT4G00380 AT4G00380
fragaria_vesca	FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780
malus_domestica	MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1
prunus_persica	Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621
rosa_laevigata	RLG00000019313 RLG00000019320
rosa_multiflora	Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111310 Rroxscaffold_2G00111340
rosa_rugosa	Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800
rosa_samantha	Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500
rosa_wichuraiana	Rw2G029490 Rw2G029510 Rw4G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	161
AclWI	GGATC	2 cut(s)	240, 329
AcsI	RAATTY	2 cut(s)	549, 601
AcuI	CTGAAG	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	4 cut(s)	41, 355, 472, 607
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	7 cut(s)	71, 79, 152, 412, 467, 478, 610
AluI	AGCT	7 cut(s)	71, 79, 152, 412, 467, 478, 610
AlwI	GGATC	2 cut(s)	240, 329
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	1 cut(s)	294
ApoI	RAATTY	2 cut(s)	549, 601
AsuHPI	GGTGA	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	48
BccI	CCATC	1 cut(s)	365
BfaI	CTAG	1 cut(s)	587
BfuAI	ACCTGC	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	101
Bsa29I	ATCGAT	1 cut(s)	393
BsaBI	GATNNNNATC	2 cut(s)	231, 375
BsaJI	CCNNGG	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse3DI	GCAATG	1 cut(s)	139
Bse8I	GATNNNNATC	2 cut(s)	231, 375
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	544
BseGI	GGATG	2 cut(s)	22, 409
BseJI	GATNNNNATC	2 cut(s)	231, 375
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	296
BshVI	ATCGAT	1 cut(s)	393
BsiHKCI	CYCGRG	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	319
BsnI	GGCC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	232, 334
Bsp19I	CCATGG	1 cut(s)	544
BspANI	GGCC	1 cut(s)	296
BspDI	ATCGAT	1 cut(s)	393
BspHI	TCATGA	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	161
BspPI	GGATC	2 cut(s)	240, 329
BsrDI	GCAATG	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	544
BssMI	GATC	2 cut(s)	232, 334
BssT1I	CCWWGG	1 cut(s)	544
Bst4CI	ACNGT	2 cut(s)	455, 583
Bst6I	CTCTTC	1 cut(s)	423
BstC8I	GCNNGC	2 cut(s)	504, 524
BstDSI	CCRYGG	1 cut(s)	544
BstENI	CCTNNNNNAGG	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	22, 409
BstKTI	GATC	2 cut(s)	235, 337
BstMBI	GATC	2 cut(s)	232, 334
BstNSI	RCATGY	2 cut(s)	258, 622
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	296
BsuTUI	ATCGAT	1 cut(s)	393
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	2 cut(s)	22, 409
BveI	ACCTGC	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	504, 524
CciI	TCATGA	1 cut(s)	379
ClaI	ATCGAT	1 cut(s)	393
CviAII	CATG	7 cut(s)	46, 255, 380, 449, 517, 545, 619
DpnI	GATC	2 cut(s)	234, 336
DpnII	GATC	2 cut(s)	232, 334
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	544
Eco147I	AGGCCT	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	443
Eco88I	CYCGRG	1 cut(s)	275
EcoNI	CCTNNNNNAGG	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	544
FaeI	CATG	7 cut(s)	49, 258, 383, 452, 520, 548, 622
FaiI	YATR	9 cut(s)	47, 204, 256, 307, 381, 450, 518, 546, 620
FatI	CATG	7 cut(s)	45, 254, 379, 448, 516, 544, 618
FokI	GGATG	2 cut(s)	29, 416
FspBI	CTAG	1 cut(s)	587
HaeIII	GGCC	1 cut(s)	296
Hin1II	CATG	7 cut(s)	49, 258, 383, 452, 520, 548, 622
HinfI	GANTC	3 cut(s)	49, 100, 376
HphI	GGTGA	1 cut(s)	370
Hpy188I	TCNGA	4 cut(s)	111, 210, 330, 423
Hpy188III	TCNNGA	4 cut(s)	14, 53, 275, 380
HpyAV	CCTTC	3 cut(s)	253, 307, 418
HpyCH4III	ACNGT	2 cut(s)	455, 583
HpyCH4V	TGCA	4 cut(s)	97, 258, 578, 618
Hsp92II	CATG	7 cut(s)	49, 258, 383, 452, 520, 548, 622
Kzo9I	GATC	2 cut(s)	232, 334
LmnI	GCTCC	2 cut(s)	314, 555
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	587
MaeIII	GTNAC	2 cut(s)	141, 460
MalI	GATC	2 cut(s)	234, 336
MboI	GATC	2 cut(s)	232, 334
MboII	GAAGA	3 cut(s)	46, 53, 440
MflI	RGATCY	1 cut(s)	334
MluCI	AATT	6 cut(s)	56, 340, 387, 438, 549, 601
MnlI	CCTC	7 cut(s)	76, 257, 271, 282, 376, 391, 394
MseI	TTAA	7 cut(s)	27, 164, 213, 263, 441, 480, 634
MslI	CAYNNNNRTG	1 cut(s)	453
NcoI	CCATGG	1 cut(s)	544
NdeII	GATC	2 cut(s)	232, 334
NlaIII	CATG	7 cut(s)	49, 258, 383, 452, 520, 548, 622
NspI	RCATGY	2 cut(s)	258, 622
PaeR7I	CTCGAG	1 cut(s)	275
PagI	TCATGA	1 cut(s)	379
PceI	AGGCCT	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	49, 100, 376
PsuI	RGATCY	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	7 cut(s)	27, 164, 213, 263, 441, 480, 634
Sau3AI	GATC	2 cut(s)	232, 334
SfaNI	GCATC	1 cut(s)	16
Sfr274I	CTCGAG	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	2 cut(s)	80, 275
SmoI	CTYRAG	2 cut(s)	80, 275
Sse9I	AATT	6 cut(s)	56, 340, 387, 438, 549, 601
SseBI	AGGCCT	1 cut(s)	296
SspMI	CTAG	1 cut(s)	587
StuI	AGGCCT	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	2 cut(s)	455, 583
TaqI	TCGA	3 cut(s)	249, 276, 393
TasI	AATT	6 cut(s)	56, 340, 387, 438, 549, 601
TfiI	GAWTC	3 cut(s)	49, 100, 376
Tru1I	TTAA	7 cut(s)	27, 164, 213, 263, 441, 480, 634
Tru9I	TTAA	7 cut(s)	27, 164, 213, 263, 441, 480, 634
TspDTI	ATGAA	4 cut(s)	17, 33, 62, 498
XagI	CCTNNNNNAGG	1 cut(s)	317
XapI	RAATTY	2 cut(s)	549, 601
XceI	RCATGY	2 cut(s)	258, 622
XhoI	CTCGAG	1 cut(s)	275
XspI	CTAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.