Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002080

Physical Location & Seq

Genomic Coordinates Forward (+)

27046241 .. 27053902

Gene Structure 7662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1222100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1920 bp

ATGTTGACAATCCAGATGGACTACAGCTCTGAAGATGAATCTGATATTAGTGATTCCGAGATCCATGAATACAAAGATAAACCCTATGAGCTGTTACGGGAGGGAAAATATAAAGTAAAGGGTCCTAATGGGACTCTTAGATGCCCATTTTGTGCGGGGAAGAAGAAACAAGATTACAAATTCAATGAACTCTTCCAACATGCTTCAGGGGTGGCCAAAGGTTCTGCTCTCAGAAATGCGAAACAGAAAGCCAACCACCTTGCCTTGGCAATCTACTTGGAGAATGACCTAGCCAGCGAAGGAGAACAAATACAACGTCCAATTTTACCGGCACCTGTCACACAGCAAGAAAAGCAAGAAGATCTCTACGTGTGGCCTTGGACTGGCATTGTTGTAAACATAGTGAGCCAGCCAAAGGATGGGAAAGATCTTCTAGATTCTGGATATTGGATGAGAAAGTTTTCAAAATGTAAACCTTCAGAAGTTCATACTTTGTGGAACGAAGGCGATCCTGCTGCATGCGCTGTGGTATATTTCAGTAAAGATTGGAGTGGTTTTGGGAGTGCTACTGATTTTGAGAAGATGTTTGAGACCGACTGTCAAAGTAAAAAGGATTGGAATGCCAGAAAGGAACAGCCTGGCTCAAGCATCTATGGGTGGTGTGCGCGCGCTGATGATTATCATTCCCAAGGGCAGATAGGAGAGTTTCTTCGCAAGACAGGAGAGCTTAGAACGGTGTCTGACATTGTACAGGAAGCAGCTAGAAAAAGAAATGATGTTGTGGCAAGCCTGGCCAATAAAATTGATATGACAAATGAGAATCTGGATGAACTGCGTTACAAGTACAATGAGAGGACACTGTCCTTAAGTAGGATGCTTGAAGAGAAAGATCGGCTGCACAATGACTTTGTTAAAGAAACGAGGAAGATGCAGCAAATGGCAAGAAATAATGTTCAGAGAATTTTGGAGGAGCAAGAGAAATTGAATTATGAGCTGGAGTCTAAGAAAAAGAAACTTGATACCTGGAGCAAAGAACTAAACAAACGTGAAGCAGTGACTGAGCGTGAGAGGCAAAAACTTGACGAGGATAAAAAGAAGAATGATGAGAGAAACAATTCACTCCAATTGGCTTCCGAGGAGCAGAAAAAGGCTGATGAGAGTGTCTTGAGGCTGGTTGAAGAGCAAAAGAGAGAAAAAGAGGATGCCTTAAATAAAATACTTGAGTTAGAAAAGCAACTGGATGCTAAACAGAAGCTAGAGATGGAGATTGAAGAGTTAAAAGGGAAATTAGAGGTGATGAAGCATCTGGGGGATCAAGATGATGCTGCAGTTCAATCGAAGATAAAAGAAATGGAAGATGAATTGGGGGAAAAAGTTGATGAACTTGAGGATTTAGAATCTCTAAATCAAACTCTTATCACCAAAGAACGCCAAAGCAATGATGAGTTACAAGAAGCTCGTAAAGAATTAATAGCGGGTTTGAGTGAAATGTTGAGTGGTCGATCTAATATTGGGATAAAGAGAATGGGTGATCTTGATCAGAAGCCCTTCATGAACACATGCAAGGAACGATTCACTCTTGAGGAAGCACAGGTGCAGGCCTCCACTCTATGCTCCTTGTGGCAGGATAATCTGACAAATCCTGATTGGCATCCTTTCAAGGTTATAACAGTCAATGAAGAGCCCAAGGAAATACTTGATGAGGAAGATGAGAAACTACGGAATCTGAGGGAGGAGTGGGGCAATGAGATACATGAGTGTGTCGTTACAGCCTTGAAAGAACTTAATGATTACAATCCAAGTGGGAGGTATGTTATCTCTGAACTTTGGAACTTTAAAGAAGGAAGGAAAGCTACACTGAAGGAGGTTATCAGTTTTGTCTTAAAGAGTATTAAGACACTCAAGCGAAAGAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003725 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010468 GO:0010569 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

640

Amino Acids

74.3

Weight (kDa)

5.33

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-XS	PF03470	48 - 90	1.9e-19	XS zinc finger domain
XS	PF03468	120 - 228	8.9e-35	XS domain
XH	PF03469	507 - 637	3.7e-58	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15910 AT4G00380 AT4G00380 AT4G00380
fragaria_vesca	FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780
malus_domestica	MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1
prunus_persica	Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621
rosa_laevigata	RLG00000019313 RLG00000019320
rosa_multiflora	Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111310 Rroxscaffold_2G00111340
rosa_rugosa	Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800
rosa_samantha	Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500
rosa_wichuraiana	Rw2G029490 Rw2G029510 Rw4G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1667
AccB1I	GGYRCC	1 cut(s)	331
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccII	CGCG	2 cut(s)	667, 669
AciI	CCGC	2 cut(s)	155, 1475
AclWI	GGATC	3 cut(s)	55, 503, 1320
AcoI	YGGCCR	2 cut(s)	213, 792
AcsI	RAATTY	2 cut(s)	179, 960
AcuI	CTGAAG	4 cut(s)	51, 189, 462, 1880
AfaI	GTAC	2 cut(s)	750, 845
AfiI	CCNNNNNNNGG	5 cut(s)	265, 383, 415, 419, 870
AflII	CTTAAG	1 cut(s)	865
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	9 cut(s)	184, 465, 881, 985, 1178, 1271, 1334, 1660, 1777
AhdI	GACNNNNNGTC	1 cut(s)	597
AjnI	CCWGG	3 cut(s)	637, 789, 1022
AluBI	AGCT	8 cut(s)	27, 91, 727, 761, 994, 1255, 1457, 1853
AluI	AGCT	8 cut(s)	27, 91, 727, 761, 994, 1255, 1457, 1853
Alw26I	GTCTC	1 cut(s)	584
AlwI	GGATC	3 cut(s)	55, 503, 1320
AlwNI	CAGNNNCTG	1 cut(s)	1058
AoxI	GGCC	4 cut(s)	213, 374, 792, 1599
ApeKI	GCWGC	5 cut(s)	515, 758, 895, 931, 1325
ApoI	RAATTY	2 cut(s)	179, 960
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
AseI	ATTAAT	1 cut(s)	1469
Asp700I	GAANNNNTTC	3 cut(s)	460, 1114, 1547
AspLEI	GCGC	4 cut(s)	524, 667, 669, 671
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	3 cut(s)	1306, 1411, 1541
AvaII	GGWCC	1 cut(s)	122
BaeI	ACNNNNGTAYC	2 cut(s)	1742, 1775
BalI	TGGCCA	2 cut(s)	215, 794
BanI	GGYRCC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	1686
BarI	GAAGNNNNNNTAC	2 cut(s)	1837, 1869
BbvI	GCAGC	5 cut(s)	502, 770, 882, 943, 1312
BccI	CCATC	3 cut(s)	10, 413, 1255
BcgI	CGANNNNNNTGC	6 cut(s)	497, 531, 910, 944, 1317, 1351
BciT130I	CCWGG	3 cut(s)	639, 791, 1024
BclI	TGATCA	1 cut(s)	1537
BcoDI	GTCTC	1 cut(s)	584
BfaI	CTAG	4 cut(s)	290, 434, 762, 1256
BfmI	CTRYAG	2 cut(s)	22, 1326
BfrI	CTTAAG	1 cut(s)	865
BglII	AGATCT	2 cut(s)	361, 427
BisI	GCNGC	5 cut(s)	516, 759, 896, 932, 1326
BlsI	GCNGC	5 cut(s)	517, 760, 897, 933, 1327
Bme1390I	CCNGG	3 cut(s)	639, 791, 1024
Bme18I	GGWCC	1 cut(s)	122
BmeRI	GACNNNNNGTC	1 cut(s)	597
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	2 cut(s)	123, 333
BmrFI	CCNGG	3 cut(s)	639, 791, 1024
BmsI	GCATC	9 cut(s)	131, 657, 864, 918, 1192, 1231, 1312, 1312, 1660
BpmI	CTGGAG	2 cut(s)	1016, 1045
BpuEI	CTTGAG	6 cut(s)	628, 1186, 1241, 1406, 1601, 1886
BsaAI	YACGTR	1 cut(s)	370
BsaBI	GATNNNNATC	4 cut(s)	678, 1536, 1650, 1794
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	5 cut(s)	264, 377, 688, 1134, 1686
Bsc4I	CCNNNNNNNGG	5 cut(s)	265, 383, 415, 419, 870
Bse118I	RCCGGY	1 cut(s)	328
Bse1I	ACTGG	2 cut(s)	388, 1242
Bse3DI	GCAATG	2 cut(s)	1444, 1750
Bse8I	GATNNNNATC	4 cut(s)	678, 1536, 1650, 1794
BseBI	CCWGG	3 cut(s)	639, 791, 1024
BseDI	CCNNGG	5 cut(s)	264, 377, 688, 1134, 1686
BseGI	GGATG	7 cut(s)	424, 456, 832, 879, 1207, 1246, 1651
BseJI	GATNNNNATC	4 cut(s)	678, 1536, 1650, 1794
BseLI	CCNNNNNNNGG	5 cut(s)	265, 383, 415, 419, 870
BseMI	GCAATG	2 cut(s)	1444, 1750
BseMII	CTCAG	3 cut(s)	244, 1050, 1718
BseNI	ACTGG	2 cut(s)	388, 1242
BsePI	GCGCGC	2 cut(s)	665, 667
BseRI	GAGGAG	3 cut(s)	983, 1151, 1748
BseXI	GCAGC	5 cut(s)	502, 770, 882, 943, 1312
BsgI	GTGCAG	2 cut(s)	881, 1616
Bsh1236I	CGCG	2 cut(s)	667, 669
BshFI	GGCC	4 cut(s)	215, 376, 794, 1601
BshNI	GGYRCC	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	5 cut(s)	265, 383, 415, 419, 870
BsmAI	GTCTC	1 cut(s)	584
BsmFI	GGGAC	1 cut(s)	145
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	4 cut(s)	215, 376, 794, 1601
Bso31I	GGTCTC	1 cut(s)	584
Bsp1286I	GDGCHC	1 cut(s)	1686
Bsp1407I	TGTACA	1 cut(s)	748
Bsp143I	GATC	9 cut(s)	60, 361, 427, 508, 889, 1312, 1502, 1531, 1537
BspACI	CCGC	2 cut(s)	155, 1475
BspANI	GGCC	4 cut(s)	215, 376, 794, 1601
BspCNI	CTCAG	3 cut(s)	243, 1051, 1719
BspFNI	CGCG	2 cut(s)	667, 669
BspHI	TCATGA	1 cut(s)	1551
BspLI	GGNNCC	2 cut(s)	123, 333
BspMAI	CTGCAG	1 cut(s)	1330
BspPI	GGATC	3 cut(s)	55, 503, 1320
BspQI	GCTCTTC	2 cut(s)	1173, 1674
BspT107I	GGYRCC	1 cut(s)	331
BspTI	CTTAAG	1 cut(s)	865
BspTNI	GGTCTC	1 cut(s)	584
BsrDI	GCAATG	2 cut(s)	1444, 1750
BsrFI	RCCGGY	1 cut(s)	328
BsrGI	TGTACA	1 cut(s)	748
BsrI	ACTGG	2 cut(s)	388, 1242
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	5 cut(s)	264, 377, 688, 1134, 1686
BssHII	GCGCGC	2 cut(s)	665, 667
BssMI	GATC	9 cut(s)	60, 361, 427, 508, 889, 1312, 1502, 1531, 1537
BssT1I	CCWWGG	4 cut(s)	264, 377, 688, 1686
Bst2UI	CCWGG	3 cut(s)	639, 791, 1024
Bst4CI	ACNGT	4 cut(s)	599, 736, 861, 1672
Bst6I	CTCTTC	5 cut(s)	197, 876, 1173, 1266, 1674
BstAFI	CTTAAG	1 cut(s)	865
BstAUI	TGTACA	1 cut(s)	748
BstBAI	YACGTR	1 cut(s)	370
BstC8I	GCNNGC	7 cut(s)	295, 410, 520, 667, 669, 787, 1599
BstDEI	CTNAG	6 cut(s)	137, 230, 728, 1002, 1059, 1727
BstENI	CCTNNNNNAGG	1 cut(s)	868
BstF5I	GGATG	7 cut(s)	424, 456, 832, 879, 1207, 1246, 1651
BstFNI	CGCG	2 cut(s)	667, 669
BstHHI	GCGC	4 cut(s)	524, 667, 669, 671
BstKTI	GATC	9 cut(s)	63, 364, 430, 511, 892, 1315, 1505, 1534, 1540
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	9 cut(s)	60, 361, 427, 508, 889, 1312, 1502, 1531, 1537
BstMWI	GCNNNNNNNGC	4 cut(s)	352, 521, 791, 1069
BstNI	CCWGG	3 cut(s)	639, 791, 1024
BstNSI	RCATGY	3 cut(s)	203, 522, 1563
BstSCI	CCNGG	3 cut(s)	637, 789, 1022
BstSFI	CTRYAG	2 cut(s)	22, 1326
BstUI	CGCG	2 cut(s)	667, 669
BstV1I	GCAGC	5 cut(s)	502, 770, 882, 943, 1312
BstX2I	RGATCY	3 cut(s)	60, 361, 427
BstYI	RGATCY	3 cut(s)	60, 361, 427
BsuRI	GGCC	4 cut(s)	215, 376, 794, 1601
BtsCI	GGATG	7 cut(s)	424, 456, 832, 879, 1207, 1246, 1651
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	3 cut(s)	857, 1059, 1856
Cac8I	GCNNGC	7 cut(s)	295, 410, 520, 667, 669, 787, 1599
CaiI	CAGNNNCTG	1 cut(s)	1058
CciI	TCATGA	1 cut(s)	1551
CfoI	GCGC	4 cut(s)	524, 667, 669, 671
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	749, 844
CspCI	CAANNNNNGTGG	2 cut(s)	1783, 1818
CviAII	CATG	7 cut(s)	65, 200, 519, 1552, 1560, 1754, 1917
CviQI	GTAC	2 cut(s)	749, 844
DdeI	CTNAG	6 cut(s)	137, 230, 728, 1002, 1059, 1727
DpnI	GATC	9 cut(s)	62, 363, 429, 510, 891, 1314, 1504, 1533, 1539
DpnII	GATC	9 cut(s)	60, 361, 427, 508, 889, 1312, 1502, 1531, 1537
DraI	TTTAAA	1 cut(s)	1837
DriI	GACNNNNNGTC	1 cut(s)	597
EaeI	YGGCCR	2 cut(s)	213, 792
Eam1104I	CTCTTC	5 cut(s)	197, 876, 1173, 1266, 1674
Eam1105I	GACNNNNNGTC	1 cut(s)	597
EarI	CTCTTC	5 cut(s)	197, 876, 1173, 1266, 1674
Eco130I	CCWWGG	4 cut(s)	264, 377, 688, 1686
Eco147I	AGGCCT	1 cut(s)	1601
Eco24I	GRGCYC	1 cut(s)	1686
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	4 cut(s)	51, 189, 462, 1880
EcoNI	CCTNNNNNAGG	1 cut(s)	868
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	3 cut(s)	637, 789, 1022
EcoT14I	CCWWGG	4 cut(s)	264, 377, 688, 1686
EcoT38I	GRGCYC	1 cut(s)	1686
ErhI	CCWWGG	4 cut(s)	264, 377, 688, 1686
FaeI	CATG	7 cut(s)	68, 203, 522, 1555, 1563, 1757, 1920
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	7 cut(s)	64, 199, 518, 1551, 1559, 1753, 1916
FauI	CCCGC	2 cut(s)	148, 1468
FbaI	TGATCA	1 cut(s)	1537
Fnu4HI	GCNGC	5 cut(s)	516, 759, 896, 932, 1326
FokI	GGATG	7 cut(s)	431, 463, 839, 886, 1214, 1253, 1638
FriOI	GRGCYC	1 cut(s)	1686
Fsp4HI	GCNGC	5 cut(s)	516, 759, 896, 932, 1326
FspBI	CTAG	4 cut(s)	290, 434, 762, 1256
GlaI	GCGC	4 cut(s)	523, 666, 668, 670
GluI	GCNGC	5 cut(s)	516, 759, 896, 932, 1326
GsuI	CTGGAG	2 cut(s)	1016, 1045
HaeIII	GGCC	4 cut(s)	215, 376, 794, 1601
HapII	CCGG	1 cut(s)	329
HhaI	GCGC	4 cut(s)	524, 667, 669, 671
Hin1II	CATG	7 cut(s)	68, 203, 522, 1555, 1563, 1757, 1920
Hin6I	GCGC	4 cut(s)	522, 665, 667, 669
HinP1I	GCGC	4 cut(s)	522, 665, 667, 669
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	9 cut(s)	38, 53, 133, 437, 820, 998, 1397, 1572, 1723
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	3 cut(s)	1306, 1411, 1541
Hpy166II	GTNNAC	3 cut(s)	6, 397, 473
Hpy8I	GTNNAC	3 cut(s)	6, 397, 473
HpyAV	CCTTC	7 cut(s)	293, 486, 497, 1558, 1835, 1839, 1855
HpyCH4III	ACNGT	4 cut(s)	599, 736, 861, 1672
HpyCH4IV	ACGT	3 cut(s)	316, 369, 1045
HpyCH4V	TGCA	6 cut(s)	518, 898, 931, 1328, 1563, 1597
HpyF10VI	GCNNNNNNNGC	4 cut(s)	352, 521, 791, 1069
HpyF3I	CTNAG	6 cut(s)	137, 230, 728, 1002, 1059, 1727
HpySE526I	ACGT	3 cut(s)	316, 369, 1045
Hsp92II	CATG	7 cut(s)	68, 203, 522, 1555, 1563, 1757, 1920
HspAI	GCGC	4 cut(s)	522, 665, 667, 669
Ksp22I	TGATCA	1 cut(s)	1537
Kzo9I	GATC	9 cut(s)	60, 361, 427, 508, 889, 1312, 1502, 1531, 1537
LguI	GCTCTTC	2 cut(s)	1173, 1674
LmnI	GCTCC	4 cut(s)	970, 1026, 1138, 1619
Lsp1109I	GCAGC	5 cut(s)	502, 770, 882, 943, 1312
LweI	GCATC	9 cut(s)	131, 657, 864, 918, 1192, 1231, 1312, 1312, 1660
MaeI	CTAG	4 cut(s)	290, 434, 762, 1256
MaeII	ACGT	3 cut(s)	316, 369, 1045
MaeIII	GTNAC	6 cut(s)	93, 337, 836, 1054, 1446, 1765
MalI	GATC	9 cut(s)	62, 363, 429, 510, 891, 1314, 1504, 1533, 1539
MboI	GATC	9 cut(s)	60, 361, 427, 508, 889, 1312, 1502, 1531, 1537
MfeI	CAATTG	1 cut(s)	1124
MflI	RGATCY	3 cut(s)	60, 361, 427
MhlI	GDGCHC	1 cut(s)	1686
MlsI	TGGCCA	2 cut(s)	215, 794
MluNI	TGGCCA	2 cut(s)	215, 794
MlyI	GAGTC	2 cut(s)	127, 1007
MmeI	TCCRAC	1 cut(s)	220
Mox20I	TGGCCA	2 cut(s)	215, 794
MroXI	GAANNNNTTC	3 cut(s)	460, 1114, 1547
MscI	TGGCCA	2 cut(s)	215, 794
MseI	TTAA	9 cut(s)	866, 912, 1208, 1277, 1469, 1785, 1836, 1883, 1893
MslI	CAYNNNNRTG	1 cut(s)	1758
Msp20I	TGGCCA	2 cut(s)	215, 794
MspCI	CTTAAG	1 cut(s)	865
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	3 cut(s)	639, 791, 1024
MunI	CAATTG	1 cut(s)	1124
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	3 cut(s)	639, 791, 1024
MvnI	CGCG	2 cut(s)	667, 669
MwoI	GCNNNNNNNGC	4 cut(s)	352, 521, 791, 1069
NdeII	GATC	9 cut(s)	60, 361, 427, 508, 889, 1312, 1502, 1531, 1537
NlaIII	CATG	7 cut(s)	68, 203, 522, 1555, 1563, 1757, 1920
NlaIV	GGNNCC	2 cut(s)	123, 333
NmuCI	GTSAC	2 cut(s)	337, 1054
NspI	RCATGY	3 cut(s)	203, 522, 1563
PaeI	GCATGC	1 cut(s)	522
PagI	TCATGA	1 cut(s)	1551
PauI	GCGCGC	2 cut(s)	665, 667
PceI	AGGCCT	1 cut(s)	1601
PciSI	GCTCTTC	2 cut(s)	1173, 1674
PctI	GAATGC	1 cut(s)	625
PdmI	GAANNNNTTC	3 cut(s)	460, 1114, 1547
PfeI	GAWTC	7 cut(s)	38, 53, 437, 820, 1397, 1572, 1723
PflFI	GACNNNGTC	1 cut(s)	859
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	5 cut(s)	517, 760, 897, 933, 1327
PleI	GAGTC	2 cut(s)	127, 1006
PpsI	GAGTC	2 cut(s)	127, 1006
Ppu21I	YACGTR	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	122
PshBI	ATTAAT	1 cut(s)	1469
PsiI	TTATAA	1 cut(s)	1667
Psp5II	RGGWCCY	1 cut(s)	122
Psp6I	CCWGG	3 cut(s)	637, 789, 1022
PspGI	CCWGG	3 cut(s)	637, 789, 1022
PspN4I	GGNNCC	2 cut(s)	123, 333
PspPI	GGNCC	1 cut(s)	122
PspPPI	RGGWCCY	1 cut(s)	122
PstI	CTGCAG	1 cut(s)	1330
PstNI	CAGNNNCTG	1 cut(s)	1058
PsuI	RGATCY	3 cut(s)	60, 361, 427
PsyI	GACNNNGTC	1 cut(s)	859
PteI	GCGCGC	2 cut(s)	665, 667
RsaI	GTAC	2 cut(s)	750, 845
RsaNI	GTAC	2 cut(s)	749, 844
RseI	CAYNNNNRTG	1 cut(s)	1758
SapI	GCTCTTC	2 cut(s)	1173, 1674
SaqAI	TTAA	9 cut(s)	866, 912, 1208, 1277, 1469, 1785, 1836, 1883, 1893
SatI	GCNGC	5 cut(s)	516, 759, 896, 932, 1326
Sau3AI	GATC	9 cut(s)	60, 361, 427, 508, 889, 1312, 1502, 1531, 1537
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	2 cut(s)	127, 1007
ScrFI	CCNGG	3 cut(s)	639, 791, 1024
SduI	GDGCHC	1 cut(s)	1686
SfaNI	GCATC	9 cut(s)	131, 657, 864, 918, 1192, 1231, 1312, 1312, 1660
SfcI	CTRYAG	2 cut(s)	22, 1326
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	1758
SmlI	CTYRAG	7 cut(s)	643, 865, 1165, 1220, 1385, 1580, 1901
SmoI	CTYRAG	7 cut(s)	643, 865, 1165, 1220, 1385, 1580, 1901
SphI	GCATGC	1 cut(s)	522
SseBI	AGGCCT	1 cut(s)	1601
SsiI	CCGC	2 cut(s)	155, 1475
SspI	AATATT	1 cut(s)	1510
SspMI	CTAG	4 cut(s)	290, 434, 762, 1256
StuI	AGGCCT	1 cut(s)	1601
StyD4I	CCNGG	3 cut(s)	637, 789, 1022
StyI	CCWWGG	4 cut(s)	264, 377, 688, 1686
TaaI	ACNGT	4 cut(s)	599, 736, 861, 1672
TaiI	ACGT	3 cut(s)	319, 372, 1048
TaqI	TCGA	2 cut(s)	1337, 1501
TaqII	GACCGA	1 cut(s)	608
TatI	WGTACW	2 cut(s)	748, 843
TfiI	GAWTC	7 cut(s)	38, 53, 437, 820, 1397, 1572, 1723
Tru1I	TTAA	9 cut(s)	866, 912, 1208, 1277, 1469, 1785, 1836, 1883, 1893
Tru9I	TTAA	9 cut(s)	866, 912, 1208, 1277, 1469, 1785, 1836, 1883, 1893
TscAI	CASTG	3 cut(s)	864, 1059, 1863
TseFI	GTSAC	2 cut(s)	337, 1054
TseI	GCWGC	5 cut(s)	515, 758, 895, 931, 1325
Tsp45I	GTSAC	2 cut(s)	337, 1054
TspGWI	ACGGA	1 cut(s)	1735
TspRI	CASTG	3 cut(s)	864, 1059, 1863
Tth111I	GACNNNGTC	1 cut(s)	859
Van91I	CCANNNNNTGG	1 cut(s)	419
Vha464I	CTTAAG	1 cut(s)	865
VpaK11BI	GGWCC	1 cut(s)	122
VspI	ATTAAT	1 cut(s)	1469
XagI	CCTNNNNNAGG	1 cut(s)	868
XapI	RAATTY	2 cut(s)	179, 960
XbaI	TCTAGA	1 cut(s)	433
XceI	RCATGY	3 cut(s)	203, 522, 1563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	416
XmnI	GAANNNNTTC	3 cut(s)	460, 1114, 1547
XspI	CTAG	4 cut(s)	290, 434, 762, 1256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.