Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002000.1

Orthogroup ID

OG0002080

Physical Location & Seq

Genomic Coordinates Forward (+)

33551 .. 38366

Gene Structure 4816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002000.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

atggactatagctctgatgaagaatcagataacaatgaatctgagatcagtgactacaaagacaaaccgtacgagcagttacgaagtggaaagttgaaagtaaagggtcctaatggcaccctcagatgccccttttgtgctagcaagaagaaacaagattataagcacaaggatctgcttcaacatgcttccggggtggctaaaggttctgctaacagaagcacagtccaaaaggccaaccacaaagcacggatacgtgattttggcctcgtatcccttatcgagtcggaaaaagggtacgatacggtcggatacggatatgggtttcatgggtttgataatgcctttgttgaagaatcaaagaggctgcagatgatgtcacaagataatgtttggagaataattgaagtgcgagagaaactgaatgacgagttggatgctaagaaaaaggaacgggattccctgagaaaagaattaaacaaacgtgaagcaacagctgaatatgagaggcaaaaacttgacagggataaaaagaagaacgatgagagaaacaagttacttcaattggcttctgtggagcacaaaaaggcggatgagagtgtcttgaggtgggttgaagagctaaagagggaaaaagaggatgccttgtatgaaatacttcaggtagaaaaggaaattgaagaattaaatggtaaattagaggtgatgaagcatcttcgggatgaagatgaagaacccgttaaaaagaagattgaagacataaatcaagaattgagggaaaaagctaaagagcttgaggatttggaaatgctgaatcaaacgctcatcaccaaagagcgccagagcaatgatgagttacaagaagctcgtaaagtgttaatagcaggtttgcctgaaatgttggctggtcaatctcatattcggattaaaagattgggagatttggatcaaaagcccttcctcgacacatgcaagttaagatttcctctcgaggaagcacaggttcaggccttcactttatgctccctgtggcaggaaaatctgaaagatccaaattggattcctttcaaggtgatacagaaagatgggaattatgaggaaattatcgacgaggaggatgagaagctacaaaatctgaaggaagagtgggggttggagatatatgattgtgttgttacagctttaaaagagcttaatgagtataatccaagtgggcagtatgttattcctgagctctggaacgtaaaagaaggaagaatagccacattgaaggaggttattgcctttatcttgaagaatattaagacactcaagcggaagagaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003725 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010468 GO:0010569 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030054 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

442

Amino Acids

51.8

Weight (kDa)

5.58

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15910 AT4G00380 AT4G00380 AT4G00380
fragaria_vesca	FvH4_6g28780 FvH4_6g28780 FvH4_6g28780 FvH4_6g28780
malus_domestica	MD09G1224300.v1.1 MD17G1221900.v1.1 MD17G1222100.v1.1
prunus_persica	Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1 Prupe.3G097000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133161 RchiOBHm_Chr2g0133201 RchiOBHm_Chr5g0067621
rosa_laevigata	RLG00000019313 RLG00000019320
rosa_multiflora	Rmu_sc0000886.1_g000004 Rmu_sc0001962.1_g000037 Rmu_sc0002000.1_g000006 Rmu_sc0003499.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111310 Rroxscaffold_2G00111340
rosa_rugosa	Rorug02G0310400 Rorug02G0310500 Rorug02G0310700 Rorug02G0310800
rosa_samantha	Rh1AG154300 Rh1CG145100 Rh2AG275800 Rh2AG362900 Rh2AG363200 Rh2BG368400 Rh2BG368700 Rh2CG346100 Rh2CG346400 Rh2DG385800 Rh4AG153900 Rh4DG231500
rosa_wichuraiana	Rw2G029490 Rw2G029510 Rw4G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
Acc36I	ACCTGC	1 cut(s)	875
AccB1I	GGYRCC	1 cut(s)	116
AciI	CCGC	2 cut(s)	590, 1315
AclWI	GGATC	3 cut(s)	180, 954, 1043
AcuI	CTGAAG	2 cut(s)	644, 1157
AfaI	GTAC	2 cut(s)	71, 299
AfiI	CCNNNNNNNGG	1 cut(s)	1033
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
Alw21I	GWGCWC	2 cut(s)	582, 1236
AlwI	GGATC	3 cut(s)	180, 954, 1043
Ama87I	CYCGRG	1 cut(s)	989
AoxI	GGCC	3 cut(s)	234, 265, 1008
ApeKI	GCWGC	1 cut(s)	367
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	1 cut(s)	840
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	3 cut(s)	715, 820, 1084
AsuNHI	GCTAGC	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	989
AvaII	GGWCC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	1236
BbsI	GAAGAC	1 cut(s)	762
Bbv12I	GWGCWC	2 cut(s)	582, 1236
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	1 cut(s)	1079
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciVI	GTATCC	3 cut(s)	246, 283, 305
BcnI	CCSGG	1 cut(s)	193
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	2 cut(s)	7, 368
BfoI	RGCGCY	1 cut(s)	841
BfuAI	ACCTGC	1 cut(s)	875
BfuI	GTATCC	3 cut(s)	246, 283, 305
BisI	GCNGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	369
Bme1390I	CCNGG	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	107
BmeT110I	CYCGRG	1 cut(s)	989
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	108, 118
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	4 cut(s)	116, 427, 631, 721
BmtI	GCTAGC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	762
Bpu10I	CCTNAGC	1 cut(s)	1230
BpuEI	CTTGAG	3 cut(s)	625, 815, 1295
BpuMI	CCSGG	1 cut(s)	193
BsaAI	YACGTR	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	945
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	1033
Bse3DI	GCAATG	1 cut(s)	853
Bse8I	GATNNNNATC	1 cut(s)	945
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	5 cut(s)	442, 598, 646, 727, 1123
BseJI	GATNNNNATC	1 cut(s)	945
BseLI	CCNNNNNNNGG	1 cut(s)	1033
BseMI	GCAATG	1 cut(s)	853
BseMII	CTCAG	4 cut(s)	33, 136, 455, 1221
BseRI	GAGGAG	1 cut(s)	1127
BseXI	GCAGC	1 cut(s)	354
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	3 cut(s)	236, 267, 1010
BshNI	GGYRCC	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	582, 1236
BsiHKCI	CYCGRG	1 cut(s)	989
BsiSI	CCGG	1 cut(s)	192
BsiWI	CGTACG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	1033
BsnI	GGCC	3 cut(s)	236, 267, 1010
BsoBI	CYCGRG	1 cut(s)	989
Bsp1286I	GDGCHC	2 cut(s)	582, 1236
Bsp143I	GATC	4 cut(s)	45, 172, 946, 1048
BspACI	CCGC	2 cut(s)	590, 1315
BspANI	GGCC	3 cut(s)	236, 267, 1010
BspCNI	CTCAG	4 cut(s)	34, 135, 456, 1222
BspLI	GGNNCC	2 cut(s)	108, 118
BspMAI	CTGCAG	1 cut(s)	372
BspMI	ACCTGC	1 cut(s)	875
BspOI	GCTAGC	1 cut(s)	144
BspPI	GGATC	3 cut(s)	180, 954, 1043
BspQI	GCTCTTC	1 cut(s)	612
BspT107I	GGYRCC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	853
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	4 cut(s)	45, 172, 946, 1048
Bst4CI	ACNGT	3 cut(s)	69, 226, 307
Bst6I	CTCTTC	3 cut(s)	612, 1137, 1313
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	5 cut(s)	42, 122, 441, 464, 1230
BstENI	CCTNNNNNAGG	1 cut(s)	1031
BstF5I	GGATG	5 cut(s)	442, 598, 646, 727, 1123
BstH2I	RGCGCY	1 cut(s)	841
BstHHI	GCGC	1 cut(s)	840
BstKTI	GATC	4 cut(s)	48, 175, 949, 1051
BstMBI	GATC	4 cut(s)	45, 172, 946, 1048
BstMCI	CGRYCG	1 cut(s)	309
BstNSI	RCATGY	2 cut(s)	188, 972
BstSCI	CCNGG	1 cut(s)	191
BstSFI	CTRYAG	2 cut(s)	7, 368
BstV1I	GCAGC	1 cut(s)	354
BstV2I	GAAGAC	1 cut(s)	762
BstX2I	RGATCY	2 cut(s)	172, 1048
BstYI	RGATCY	2 cut(s)	172, 1048
BsuI	GTATCC	3 cut(s)	246, 283, 305
BsuRI	GGCC	3 cut(s)	236, 267, 1010
BtsCI	GGATG	5 cut(s)	442, 598, 646, 727, 1123
BtsIMutI	CAGTG	1 cut(s)	55
BveI	ACCTGC	1 cut(s)	875
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	1 cut(s)	840
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	70, 298
CviAII	CATG	4 cut(s)	185, 329, 969, 1326
CviQI	GTAC	2 cut(s)	70, 298
DdeI	CTNAG	5 cut(s)	42, 122, 441, 464, 1230
DpnI	GATC	4 cut(s)	47, 174, 948, 1050
DpnII	GATC	4 cut(s)	45, 172, 946, 1048
DraI	TTTAAA	1 cut(s)	1185
Eam1104I	CTCTTC	3 cut(s)	612, 1137, 1313
EarI	CTCTTC	3 cut(s)	612, 1137, 1313
EciI	GGCGGA	1 cut(s)	605
Ecl136II	GAGCTC	1 cut(s)	1234
Eco147I	AGGCCT	1 cut(s)	1010
Eco24I	GRGCYC	1 cut(s)	1236
Eco47I	GGWCC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	1234
Eco57I	CTGAAG	2 cut(s)	644, 1157
Eco88I	CYCGRG	1 cut(s)	989
EcoICRI	GAGCTC	1 cut(s)	1234
EcoNI	CCTNNNNNAGG	1 cut(s)	1031
EcoO109I	RGGNCCY	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	1236
FaeI	CATG	4 cut(s)	188, 332, 972, 1329
FatI	CATG	4 cut(s)	184, 328, 968, 1325
Fnu4HI	GCNGC	1 cut(s)	368
FokI	GGATG	5 cut(s)	449, 605, 653, 734, 1130
FriOI	GRGCYC	1 cut(s)	1236
Fsp4HI	GCNGC	1 cut(s)	368
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	1 cut(s)	839
GluI	GCNGC	1 cut(s)	368
HaeII	RGCGCY	1 cut(s)	841
HaeIII	GGCC	3 cut(s)	236, 267, 1010
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	1 cut(s)	840
Hin1II	CATG	4 cut(s)	188, 332, 972, 1329
Hin6I	GCGC	1 cut(s)	838
HinP1I	GCGC	1 cut(s)	838
HinfI	GANTC	7 cut(s)	23, 38, 284, 356, 458, 814, 1060
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	3 cut(s)	715, 820, 1084
Hpy188I	TCNGA	9 cut(s)	16, 28, 43, 125, 289, 311, 924, 1044, 1137
Hpy188III	TCNNGA	7 cut(s)	604, 719, 767, 989, 1229, 1237, 1291
Hpy99I	CGWCG	1 cut(s)	1112
HpyAV	CCTTC	5 cut(s)	967, 1021, 1132, 1244, 1264
HpyCH4III	ACNGT	3 cut(s)	69, 226, 307
HpyCH4IV	ACGT	3 cut(s)	256, 484, 1242
HpyCH4V	TGCA	2 cut(s)	370, 972
HpyF3I	CTNAG	5 cut(s)	42, 122, 441, 464, 1230
HpySE526I	ACGT	3 cut(s)	256, 484, 1242
Hsp92II	CATG	4 cut(s)	188, 332, 972, 1329
HspAI	GCGC	1 cut(s)	838
Kzo9I	GATC	4 cut(s)	45, 172, 946, 1048
LguI	GCTCTTC	1 cut(s)	612
LmnI	GCTCC	2 cut(s)	577, 1028
Lsp1109I	GCAGC	1 cut(s)	354
LweI	GCATC	4 cut(s)	116, 427, 631, 721
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	3 cut(s)	256, 484, 1242
MaeIII	GTNAC	6 cut(s)	50, 78, 378, 555, 855, 1174
MalI	GATC	4 cut(s)	47, 174, 948, 1050
MboI	GATC	4 cut(s)	45, 172, 946, 1048
MfeI	CAATTG	1 cut(s)	563
MflI	RGATCY	2 cut(s)	172, 1048
MhlI	GDGCHC	2 cut(s)	582, 1236
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	4 cut(s)	267, 289, 414, 1134
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	9 cut(s)	476, 686, 741, 878, 927, 977, 1184, 1194, 1302
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	193
MunI	CAATTG	1 cut(s)	563
NciI	CCSGG	1 cut(s)	193
NdeII	GATC	4 cut(s)	45, 172, 946, 1048
NheI	GCTAGC	1 cut(s)	140
NlaIII	CATG	4 cut(s)	188, 332, 972, 1329
NlaIV	GGNNCC	2 cut(s)	108, 118
NmuCI	GTSAC	2 cut(s)	50, 378
NspI	RCATGY	2 cut(s)	188, 972
PaeR7I	CTCGAG	1 cut(s)	989
PceI	AGGCCT	1 cut(s)	1010
PciSI	GCTCTTC	1 cut(s)	612
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	6 cut(s)	23, 38, 356, 458, 814, 1060
Pfl23II	CGTACG	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	369
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Ppu21I	YACGTR	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	1236
Psp5II	RGGWCCY	1 cut(s)	107
PspLI	CGTACG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	108, 118
PspPI	GGNCC	1 cut(s)	107
PspPPI	RGGWCCY	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	372
PsuI	RGATCY	2 cut(s)	172, 1048
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	2 cut(s)	71, 299
RsaNI	GTAC	2 cut(s)	70, 298
SacI	GAGCTC	1 cut(s)	1236
SapI	GCTCTTC	1 cut(s)	612
SaqAI	TTAA	9 cut(s)	476, 686, 741, 878, 927, 977, 1184, 1194, 1302
SatI	GCNGC	1 cut(s)	368
Sau3AI	GATC	4 cut(s)	45, 172, 946, 1048
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	2 cut(s)	582, 1236
SfaNI	GCATC	4 cut(s)	116, 427, 631, 721
SfcI	CTRYAG	2 cut(s)	7, 368
Sfr274I	CTCGAG	1 cut(s)	989
SinI	GGWCC	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	989
SmlI	CTYRAG	4 cut(s)	604, 794, 989, 1310
SmoI	CTYRAG	4 cut(s)	604, 794, 989, 1310
SseBI	AGGCCT	1 cut(s)	1010
SsiI	CCGC	2 cut(s)	590, 1315
SspI	AATATT	1 cut(s)	1300
SspMI	CTAG	1 cut(s)	141
SstI	GAGCTC	1 cut(s)	1236
StuI	AGGCCT	1 cut(s)	1010
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	3 cut(s)	69, 226, 307
TaiI	ACGT	3 cut(s)	259, 487, 1245
TaqI	TCGA	4 cut(s)	282, 963, 990, 1107
TfiI	GAWTC	6 cut(s)	23, 38, 356, 458, 814, 1060
Tru1I	TTAA	9 cut(s)	476, 686, 741, 878, 927, 977, 1184, 1194, 1302
Tru9I	TTAA	9 cut(s)	476, 686, 741, 878, 927, 977, 1184, 1194, 1302
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	2 cut(s)	50, 378
TseI	GCWGC	1 cut(s)	367
Tsp45I	GTSAC	2 cut(s)	50, 378
TspDTI	ATGAA	7 cut(s)	33, 51, 317, 666, 722, 738, 744
TspGWI	ACGGA	2 cut(s)	265, 330
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	107
XagI	CCTNNNNNAGG	1 cut(s)	1031
XceI	RCATGY	2 cut(s)	188, 972
XhoI	CTCGAG	1 cut(s)	989
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.