Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0016679

Physical Location & Seq

Genomic Coordinates Forward (+)

46734801 .. 46737771

Gene Structure 2971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG346500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGACAACAATAATGGCAATGAGGAAGTTCCCTCAGCTCCTTCAACTCCAGTAACACCAGGCACTCCTGGTGCTCCTCTCTTTGGTGGGTTCAAGCCAGATCACAGATCAAGTGGGATTGGTAGGAAATCACTTCTCAAGAGCTGCAGCAAGTGCTTTACTGTTGATGATTGGGCTTTGGAAGGAGCATTGCCTAGAGCTTTCTCTGCACTACCACCCTCTCCTGTCTCACTTGCAAGAAAGGTGGGAGCTGAATTCCTAGGCACTTTCATACTGATCTTTGCTGCGACAGCAACAGCCATTGTGAACCAAAAGACTGAAGGCACTGAAACCCTTCTAGGTCTTGCAGCCTCCACTGGACTCGCTGTTATGATTGTGATTTTATCAACAGGTCACATCTCTGGAGCTCATCTGAACCCTGCTGTCACCATCGCCTTTGCTGCACTCAAGCACTTCTCATGGAAACATGTACCGGTGTACATCGGAGCACAAGTGTTGGCATCTCTGTGTTCTGCGTTTGCCTTGAAGGTGATTTTTCACCCCATAATGGGGGGTGGAGTTACAGTTCCTTCAGGAAGTTATGGTCAGGCTTTTGCTCTGGAGTTCATCATCAGCTTCAACCTCATGTTTGTGGTCACTGCTGTAGCCACCGACACTAGAGCTGTAAGTCTTACAAAACCTTTCTTTTTTCATGAACAAATGATGAGTTTGAGACTCAATATCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0007154 GO:0008150 GO:0008509 GO:0008643 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015144 GO:0015166 GO:0015168 GO:0015204 GO:0015238 GO:0015318 GO:0015698 GO:0015791 GO:0015793 GO:0015840 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034219 GO:0034220 GO:0035445 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071496 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080029 GO:0098656 GO:0098660 GO:0098661 GO:1901618

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

242

Amino Acids

25.47

Weight (kDa)

8.84

Isoelectric Point (pI)

27.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	76 - 226	2e-31	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80760
fragaria_vesca	FvH4_6g28790
malus_domestica	MD17G1221800.v1.1
prunus_persica	Prupe.3G096600_v2.0.a1
pyrus_communis	pycom17g22580
rosa_chinensis	RchiOBHm_Chr2g0133211
rosa_laevigata	RLG00000019321
rosa_multiflora	Rmu_sc0000886.1_g000005
rosa_roxburghii	Rroxscaffold_2G00111300
rosa_rugosa	Rorug02G0310800
rosa_samantha	Rh2BG368900 Rh2CG346500 Rh2DG385900
rosa_wichuraiana	Rw2G029520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	2 cut(s)	339, 555
AfaI	GTAC	2 cut(s)	471, 479
AfiI	CCNNNNNNNGG	4 cut(s)	83, 547, 548, 549
AflIII	ACRYGT	1 cut(s)	466
AgeI	ACCGGT	1 cut(s)	472
AgsI	TTSAA	4 cut(s)	45, 94, 526, 619
AjnI	CCWGG	2 cut(s)	58, 67
AloI	GAACNNNNNNTCC	2 cut(s)	549, 581
AluBI	AGCT	7 cut(s)	38, 144, 200, 251, 407, 615, 662
AluI	AGCT	7 cut(s)	38, 144, 200, 251, 407, 615, 662
Alw21I	GWGCWC	3 cut(s)	76, 409, 490
Alw26I	GTCTC	2 cut(s)	232, 706
ApeKI	GCWGC	5 cut(s)	144, 147, 284, 347, 440
ApoI	RAATTY	1 cut(s)	254
AsiGI	ACCGGT	1 cut(s)	472
Asp700I	GAANNNNTTC	1 cut(s)	333
AspA2I	CCTAGG	1 cut(s)	259
AsuHPI	GGTGA	3 cut(s)	418, 530, 541
AvrII	CCTAGG	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	409
Bbv12I	GWGCWC	3 cut(s)	76, 409, 490
BbvCI	CCTCAGC	1 cut(s)	34
BbvI	GCAGC	5 cut(s)	131, 159, 271, 359, 427
BccI	CCATC	1 cut(s)	437
BciT130I	CCWGG	2 cut(s)	60, 69
BcoDI	GTCTC	2 cut(s)	232, 706
BfaI	CTAG	4 cut(s)	195, 260, 338, 657
BfmI	CTRYAG	2 cut(s)	145, 642
BisI	GCNGC	5 cut(s)	145, 148, 285, 348, 441
BlnI	CCTAGG	1 cut(s)	259
BlsI	GCNGC	5 cut(s)	146, 149, 286, 349, 442
Bme1390I	CCNGG	2 cut(s)	60, 69
BmrFI	CCNGG	2 cut(s)	60, 69
BmsI	GCATC	1 cut(s)	509
BpmI	CTGGAG	3 cut(s)	33, 423, 620
Bpu10I	CCTNAGC	1 cut(s)	34
BpuEI	CTTGAG	2 cut(s)	122, 431
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	472
BsaXI	ACNNNNNCTCC	4 cut(s)	477, 507, 549, 579
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 547, 548, 549
Bse118I	RCCGGY	1 cut(s)	472
Bse1I	ACTGG	2 cut(s)	50, 361
Bse3DI	GCAATG	2 cut(s)	25, 188
BseBI	CCWGG	2 cut(s)	60, 69
BseDI	CCNNGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	4 cut(s)	83, 547, 548, 549
BseMI	GCAATG	2 cut(s)	25, 188
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	50, 361
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	5 cut(s)	131, 159, 271, 359, 427
BsgI	GTGCAG	2 cut(s)	192, 426
BshTI	ACCGGT	1 cut(s)	472
BsiHKAI	GWGCWC	3 cut(s)	76, 409, 490
BsiSI	CCGG	1 cut(s)	473
BslI	CCNNNNNNNGG	4 cut(s)	83, 547, 548, 549
BsmAI	GTCTC	2 cut(s)	232, 706
Bsp1286I	GDGCHC	3 cut(s)	76, 409, 490
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	100, 107, 276
BspCNI	CTCAG	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	691
BspMAI	CTGCAG	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	25, 188
BsrFI	RCCGGY	1 cut(s)	472
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	50, 361
BssAI	RCCGGY	1 cut(s)	472
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	3 cut(s)	100, 107, 276
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	2 cut(s)	60, 69
Bst4CI	ACNGT	2 cut(s)	163, 565
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstAUI	TGTACA	1 cut(s)	477
BstDEI	CTNAG	1 cut(s)	34
BstKTI	GATC	3 cut(s)	103, 110, 279
BstMAI	GTCTC	2 cut(s)	232, 706
BstMBI	GATC	3 cut(s)	100, 107, 276
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 206, 290, 440
BstNI	CCWGG	2 cut(s)	60, 69
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	58, 67
BstSFI	CTRYAG	2 cut(s)	145, 642
BstV1I	GCAGC	5 cut(s)	131, 159, 271, 359, 427
BtgZI	GCGATG	1 cut(s)	415
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	3 cut(s)	324, 354, 636
CciI	TCATGA	1 cut(s)	691
Cfr10I	RCCGGY	1 cut(s)	472
Csp6I	GTAC	2 cut(s)	470, 478
CspAI	ACCGGT	1 cut(s)	472
CspCI	CAANNNNNGTGG	2 cut(s)	225, 260
CviAII	CATG	4 cut(s)	459, 467, 625, 692
CviQI	GTAC	2 cut(s)	470, 478
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	3 cut(s)	102, 109, 278
DpnII	GATC	3 cut(s)	100, 107, 276
Ecl136II	GAGCTC	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	407
Eco57I	CTGAAG	2 cut(s)	339, 555
EcoICRI	GAGCTC	1 cut(s)	407
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	58, 67
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	4 cut(s)	462, 470, 628, 695
FaiI	YATR	8 cut(s)	272, 371, 460, 468, 545, 582, 626, 693
FatI	CATG	4 cut(s)	458, 466, 624, 691
Fnu4HI	GCNGC	5 cut(s)	145, 148, 285, 348, 441
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	5 cut(s)	145, 148, 285, 348, 441
FspBI	CTAG	4 cut(s)	195, 260, 338, 657
GluI	GCNGC	5 cut(s)	145, 148, 285, 348, 441
GsuI	CTGGAG	3 cut(s)	33, 423, 620
HapII	CCGG	1 cut(s)	473
Hin1II	CATG	4 cut(s)	462, 470, 628, 695
HinfI	GANTC	2 cut(s)	360, 714
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	3 cut(s)	418, 530, 541
Hpy166II	GTNNAC	2 cut(s)	307, 478
Hpy188I	TCNGA	3 cut(s)	414, 485, 728
Hpy188III	TCNNGA	5 cut(s)	139, 402, 573, 599, 692
Hpy8I	GTNNAC	2 cut(s)	307, 478
HpyAV	CCTTC	6 cut(s)	51, 176, 314, 344, 520, 579
HpyCH4III	ACNGT	2 cut(s)	163, 565
HpyCH4V	TGCA	5 cut(s)	147, 209, 236, 347, 443
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 206, 290, 440
HpyF3I	CTNAG	1 cut(s)	34
Hsp92II	CATG	4 cut(s)	462, 470, 628, 695
Kzo9I	GATC	3 cut(s)	100, 107, 276
LmnI	GCTCC	6 cut(s)	43, 79, 185, 248, 404, 485
Lsp1109I	GCAGC	5 cut(s)	131, 159, 271, 359, 427
LweI	GCATC	1 cut(s)	509
MaeI	CTAG	4 cut(s)	195, 260, 338, 657
MaeIII	GTNAC	5 cut(s)	52, 392, 424, 559, 634
MalI	GATC	3 cut(s)	102, 109, 278
MboI	GATC	3 cut(s)	100, 107, 276
MboII	GAAGA	1 cut(s)	715
MhlI	GDGCHC	3 cut(s)	76, 409, 490
MluCI	AATT	1 cut(s)	254
MlyI	GAGTC	2 cut(s)	354, 708
MnlI	CCTC	6 cut(s)	16, 43, 87, 229, 361, 632
MroXI	GAANNNNTTC	1 cut(s)	333
MslI	CAYNNNNRTG	2 cut(s)	505, 629
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	2 cut(s)	60, 69
MvaI	CCWGG	2 cut(s)	60, 69
MwoI	GCNNNNNNNGC	4 cut(s)	153, 206, 290, 440
NdeII	GATC	3 cut(s)	100, 107, 276
NlaIII	CATG	4 cut(s)	462, 470, 628, 695
NmuCI	GTSAC	3 cut(s)	392, 424, 634
NspI	RCATGY	1 cut(s)	470
PagI	TCATGA	1 cut(s)	691
PciI	ACATGT	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	333
PinAI	ACCGGT	1 cut(s)	472
PkrI	GCNGC	5 cut(s)	146, 149, 286, 349, 442
PleI	GAGTC	2 cut(s)	354, 708
PpsI	GAGTC	2 cut(s)	354, 708
PscI	ACATGT	1 cut(s)	466
Psp124BI	GAGCTC	1 cut(s)	409
Psp6I	CCWGG	2 cut(s)	58, 67
PspGI	CCWGG	2 cut(s)	58, 67
PstI	CTGCAG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	471, 479
RsaNI	GTAC	2 cut(s)	470, 478
RseI	CAYNNNNRTG	2 cut(s)	505, 629
SacI	GAGCTC	1 cut(s)	409
SatI	GCNGC	5 cut(s)	145, 148, 285, 348, 441
Sau3AI	GATC	3 cut(s)	100, 107, 276
SchI	GAGTC	2 cut(s)	354, 708
ScrFI	CCNGG	2 cut(s)	60, 69
SduI	GDGCHC	3 cut(s)	76, 409, 490
SfaNI	GCATC	1 cut(s)	509
SfcI	CTRYAG	2 cut(s)	145, 642
SmiMI	CAYNNNNRTG	2 cut(s)	505, 629
SmlI	CTYRAG	2 cut(s)	137, 446
SmoI	CTYRAG	2 cut(s)	137, 446
Sse9I	AATT	1 cut(s)	254
SspMI	CTAG	4 cut(s)	195, 260, 338, 657
SstI	GAGCTC	1 cut(s)	409
StyD4I	CCNGG	2 cut(s)	58, 67
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	163, 565
TasI	AATT	1 cut(s)	254
TatI	WGTACW	1 cut(s)	477
TscAI	CASTG	3 cut(s)	331, 361, 643
TseFI	GTSAC	3 cut(s)	392, 424, 634
TseI	GCWGC	5 cut(s)	144, 147, 284, 347, 440
Tsp45I	GTSAC	3 cut(s)	392, 424, 634
TspDTI	ATGAA	4 cut(s)	259, 595, 680, 708
TspRI	CASTG	3 cut(s)	331, 361, 643
XapI	RAATTY	1 cut(s)	254
XceI	RCATGY	1 cut(s)	470
XmaJI	CCTAGG	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	4 cut(s)	195, 260, 338, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.