Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013511

Physical Location & Seq

Genomic Coordinates Reverse (-)

83260 .. 85258

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAGCAGCACAAGCACTAGTTCTGCTCTTATCCACCATTTCCGCCTCACCACTCGCAACTTGGGTTCGCCTACAAAGCAGCGTTGTCCTTACGCTGTAACTTTCTGCAATTCGTGGAGGGAAGCTGGACTCCGATACTCCGTCACGCAACGCCGGAGCAAAGGCTTTGGGCCGGTGTCAGCTCTCAATGACGACGATTCACCAACAGAGACCACCCCCGGCGTTGGCTCTGCTGTAGAAGACAGACCACCAGATTCATCTGAAGATAGATCAAGTTCGGTCTATGAGTTTCTGTATCCCCGTAAAGAGGAGCTCCCTGATGACAAAGAAATGACTATTTTCGACCATCTCGAGGAGCTCCGGGAGAGAATATTCGTCTCTGTTTTGGCTGTAGGAGCTGCAATCTTGGGATGCTTCGCCTTCTCCAAAGATCTTATTGTCTTTCTTGAAGCTCCCGTCAAAACTCAGGGTGTACGGTTTCTCCAGCTTGCTCCTGGCGAATTTTTCTTCACAACTTTAAAGGTCTCCGGTTATTGCGGGCTTCTACTAGGGAGCCCAGTGATCCTGTATGAGATTATAGCTTTTGTCCTTCCCGGTCTGACACGGGCTGAGAGAAGGTTTCTGGGGCCAATTGTATTTGGCTCCTCATTGCTCTTCTATGCTGGACTTGCTTTCTCCTACTGGGTTTTAACCCCTGCAGCCTTGAATTTCTTTGTGAATTACGCTGAAGGTGTGGTAGAATCTCTGTGGTCTATCGACCAGTACTTTGAGTTTGTACTAGTGCTTATGTTCAGCACAGGCCTTTCTTTCCAGGTTCCAGTCATTCAGTTACTCCTGGGACAAGTAGGGGTTGTGTCGGGAGATCAAATGCTATCAATTTGGAGATATGTGGTGGTAGGTGCGGTGGTTGCAGCAGCTGTTGTCACACCCTCGACAGACCCTGTCACTCAAATGCTCCTAGCAACACCGCTTCTGGGGCTCTACTTGGGTGGTGCATGGATGGTCAAGCTCACAGGTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009566 GO:0009567 GO:0009579 GO:0009657 GO:0009668 GO:0009977 GO:0009987 GO:0010027 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022414 GO:0022804 GO:0022857 GO:0022884 GO:0031224 GO:0031360 GO:0031361 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043235 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055035 GO:0055085 GO:0061024 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0098796 GO:0098797 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

TatC

Protein Analysis

340

Amino Acids

37.37

Weight (kDa)

5.36

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatC	PF00902	115 - 323	1.3e-66	Sec-independent protein translocase protein (TatC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01110
fragaria_vesca	FvH4_4g26390 FvH4_4g26390
malus_domestica	MD13G1032500.v1.1 MD16G1034600.v1.1
prunus_persica	Prupe.1G320000_v2.0.a1
pyrus_communis	pycom16g02940
rosa_chinensis	RchiOBHm_Chr4g0434021
rosa_laevigata	RLG00000006708
rosa_multiflora	Rmu_sc0000352.1_g000022 Rmu_sc0000352.1_g000024
rosa_roxburghii	Rroxscaffold_5G00375430
rosa_rugosa	Rorug04G0272700
rosa_samantha	Rh4AG328400 Rh4BG335700 Rh4CG351200 Rh4DG332100
rosa_wichuraiana	Rw4G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	43, 537, 902, 968
AclWI	GGATC	1 cut(s)	556
AcsI	RAATTY	2 cut(s)	500, 706
AcuI	CTGAAG	2 cut(s)	282, 747
AfaI	GTAC	3 cut(s)	474, 764, 777
AfiI	CCNNNNNNNGG	4 cut(s)	224, 307, 352, 974
AgsI	TTSAA	2 cut(s)	449, 706
AhlI	ACTAGT	2 cut(s)	17, 778
AjnI	CCWGG	3 cut(s)	493, 810, 834
Alw21I	GWGCWC	2 cut(s)	315, 360
Alw26I	GTCTC	3 cut(s)	203, 382, 529
AlwI	GGATC	1 cut(s)	556
AlwNI	CAGNNNCTG	2 cut(s)	917, 941
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	3 cut(s)	170, 626, 799
ApeKI	GCWGC	6 cut(s)	6, 79, 398, 698, 911, 914
ApoI	RAATTY	2 cut(s)	500, 706
ArsI	GACNNNNNNTTYG	2 cut(s)	749, 781
AspS9I	GGNCC	2 cut(s)	170, 626
AsuC2I	CCSGG	3 cut(s)	219, 362, 594
AsuHPI	GGTGA	2 cut(s)	40, 192
AvaI	CYCGRG	1 cut(s)	350
BanII	GRGCYC	4 cut(s)	315, 360, 557, 981
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	2 cut(s)	315, 360
BbvI	GCAGC	6 cut(s)	18, 91, 385, 710, 923, 926
BccI	CCATC	2 cut(s)	354, 994
BciT130I	CCWGG	3 cut(s)	495, 812, 836
BciVI	GTATCC	1 cut(s)	306
BcnI	CCSGG	3 cut(s)	219, 362, 594
BcoDI	GTCTC	3 cut(s)	203, 382, 529
BcuI	ACTAGT	2 cut(s)	17, 778
BfaI	CTAG	4 cut(s)	18, 548, 779, 959
BfmI	CTRYAG	3 cut(s)	234, 390, 696
BfuI	GTATCC	1 cut(s)	306
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	6 cut(s)	7, 80, 399, 699, 912, 915
BlsI	GCNGC	6 cut(s)	8, 81, 400, 700, 913, 916
BmcAI	AGTACT	1 cut(s)	764
Bme1390I	CCNGG	6 cut(s)	219, 362, 495, 594, 812, 836
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	170, 626
BmiI	GGNNCC	4 cut(s)	554, 627, 643, 816
BmrFI	CCNGG	6 cut(s)	219, 362, 495, 594, 812, 836
BmrI	ACTGGG	2 cut(s)	551, 691
BmsI	GCATC	1 cut(s)	401
BmuI	ACTGGG	2 cut(s)	551, 691
BpiI	GAAGAC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	467
BpuMI	CCSGG	3 cut(s)	219, 362, 594
BsaI	GGTCTC	2 cut(s)	203, 529
BsaJI	CCNNGG	2 cut(s)	217, 835
BsaWI	WCCGGW	1 cut(s)	527
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bsc4I	CCNNNNNNNGG	4 cut(s)	224, 307, 352, 974
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	4 cut(s)	557, 686, 760, 818
Bse3DI	GCAATG	1 cut(s)	647
BseBI	CCWGG	3 cut(s)	495, 812, 836
BseDI	CCNNGG	2 cut(s)	217, 835
BseGI	GGATG	2 cut(s)	416, 1005
BseLI	CCNNNNNNNGG	4 cut(s)	224, 307, 352, 974
BseMI	GCAATG	1 cut(s)	647
BseMII	CTCAG	2 cut(s)	479, 600
BseNI	ACTGG	4 cut(s)	557, 686, 760, 818
BseRI	GAGGAG	3 cut(s)	323, 368, 634
BseXI	GCAGC	6 cut(s)	18, 91, 385, 710, 923, 926
BshFI	GGCC	3 cut(s)	172, 628, 801
BsiHKAI	GWGCWC	2 cut(s)	315, 360
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	6 cut(s)	154, 173, 219, 361, 528, 594
BslFI	GGGAC	1 cut(s)	852
BslI	CCNNNNNNNGG	4 cut(s)	224, 307, 352, 974
BsmAI	GTCTC	3 cut(s)	203, 382, 529
BsmBI	CGTCTC	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	852
BsnI	GGCC	3 cut(s)	172, 628, 801
Bso31I	GGTCTC	2 cut(s)	203, 529
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	4 cut(s)	315, 360, 557, 981
Bsp143I	GATC	4 cut(s)	269, 430, 561, 862
BspACI	CCGC	4 cut(s)	43, 537, 902, 968
BspANI	GGCC	3 cut(s)	172, 628, 801
BspCNI	CTCAG	2 cut(s)	478, 601
BspLI	GGNNCC	4 cut(s)	554, 627, 643, 816
BspMAI	CTGCAG	1 cut(s)	700
BspPI	GGATC	1 cut(s)	556
BspQI	GCTCTTC	1 cut(s)	659
BspTNI	GGTCTC	2 cut(s)	203, 529
BsrDI	GCAATG	1 cut(s)	647
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	4 cut(s)	557, 686, 760, 818
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	217, 835
BssMI	GATC	4 cut(s)	269, 430, 561, 862
Bst2UI	CCWGG	3 cut(s)	495, 812, 836
Bst4CI	ACNGT	1 cut(s)	477
Bst6I	CTCTTC	1 cut(s)	659
BstC8I	GCNNGC	2 cut(s)	489, 539
BstDEI	CTNAG	2 cut(s)	465, 609
BstF5I	GGATG	2 cut(s)	416, 1005
BstKTI	GATC	4 cut(s)	272, 433, 564, 865
BstMAI	GTCTC	3 cut(s)	203, 382, 529
BstMBI	GATC	4 cut(s)	269, 430, 561, 862
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 76, 395, 668, 908, 976
BstNI	CCWGG	3 cut(s)	495, 812, 836
BstSCI	CCNGG	6 cut(s)	217, 360, 493, 592, 810, 834
BstSFI	CTRYAG	3 cut(s)	234, 390, 696
BstV1I	GCAGC	6 cut(s)	18, 91, 385, 710, 923, 926
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuI	GTATCC	1 cut(s)	306
BsuRI	GGCC	3 cut(s)	172, 628, 801
BtsCI	GGATG	2 cut(s)	416, 1005
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	2 cut(s)	489, 539
CaiI	CAGNNNCTG	2 cut(s)	917, 941
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	170, 626
Csp6I	GTAC	3 cut(s)	473, 763, 776
CviAII	CATG	1 cut(s)	996
CviQI	GTAC	3 cut(s)	473, 763, 776
DdeI	CTNAG	2 cut(s)	465, 609
DpnI	GATC	4 cut(s)	271, 432, 563, 864
DpnII	GATC	4 cut(s)	269, 430, 561, 862
DraI	TTTAAA	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	659
EarI	CTCTTC	1 cut(s)	659
EciI	GGCGGA	1 cut(s)	32
Ecl136II	GAGCTC	2 cut(s)	313, 358
Eco147I	AGGCCT	1 cut(s)	801
Eco24I	GRGCYC	4 cut(s)	315, 360, 557, 981
Eco31I	GGTCTC	2 cut(s)	203, 529
Eco53kI	GAGCTC	2 cut(s)	313, 358
Eco57I	CTGAAG	2 cut(s)	282, 747
Eco88I	CYCGRG	1 cut(s)	350
EcoICRI	GAGCTC	2 cut(s)	313, 358
EcoRII	CCWGG	3 cut(s)	493, 810, 834
EcoT38I	GRGCYC	4 cut(s)	315, 360, 557, 981
Esp3I	CGTCTC	1 cut(s)	382
FaeI	CATG	1 cut(s)	999
FaiI	YATR	7 cut(s)	285, 570, 578, 660, 788, 888, 997
FaqI	GGGAC	1 cut(s)	852
FatI	CATG	1 cut(s)	995
FauI	CCCGC	1 cut(s)	530
Fnu4HI	GCNGC	6 cut(s)	7, 80, 399, 699, 912, 915
FokI	GGATG	2 cut(s)	423, 1012
FriOI	GRGCYC	4 cut(s)	315, 360, 557, 981
Fsp4HI	GCNGC	6 cut(s)	7, 80, 399, 699, 912, 915
FspBI	CTAG	4 cut(s)	18, 548, 779, 959
GluI	GCNGC	6 cut(s)	7, 80, 399, 699, 912, 915
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	3 cut(s)	172, 628, 801
HapII	CCGG	6 cut(s)	154, 173, 219, 361, 528, 594
Hin1II	CATG	1 cut(s)	999
HinfI	GANTC	4 cut(s)	129, 197, 254, 740
HpaII	CCGG	6 cut(s)	154, 173, 219, 361, 528, 594
HphI	GGTGA	2 cut(s)	40, 192
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	3 cut(s)	134, 262, 600
Hpy188III	TCNNGA	3 cut(s)	350, 446, 858
Hpy8I	GTNNAC	1 cut(s)	473
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	4 cut(s)	430, 599, 609, 722
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4V	TGCA	5 cut(s)	108, 401, 698, 911, 995
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 76, 395, 668, 908, 976
HpyF3I	CTNAG	2 cut(s)	465, 609
Hsp92II	CATG	1 cut(s)	999
Kzo9I	GATC	4 cut(s)	269, 430, 561, 862
LguI	GCTCTTC	1 cut(s)	659
Lsp1109I	GCAGC	6 cut(s)	18, 91, 385, 710, 923, 926
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	4 cut(s)	18, 548, 779, 959
MaeIII	GTNAC	5 cut(s)	97, 142, 828, 922, 943
MalI	GATC	4 cut(s)	271, 432, 563, 864
MboI	GATC	4 cut(s)	269, 430, 561, 862
MboII	GAAGA	4 cut(s)	251, 275, 499, 646
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	4 cut(s)	315, 360, 557, 981
MluCI	AATT	6 cut(s)	109, 500, 630, 706, 718, 876
MlyI	GAGTC	1 cut(s)	123
MnlI	CCTC	6 cut(s)	56, 111, 301, 346, 655, 940
MseI	TTAA	2 cut(s)	518, 689
MslI	CAYNNNNRTG	1 cut(s)	950
MspA1I	CMGCKG	1 cut(s)	917
MspI	CCGG	6 cut(s)	154, 173, 219, 361, 528, 594
MspR9I	CCNGG	6 cut(s)	219, 362, 495, 594, 812, 836
MunI	CAATTG	1 cut(s)	630
MvaI	CCWGG	3 cut(s)	495, 812, 836
MwoI	GCNNNNNNNGC	6 cut(s)	12, 76, 395, 668, 908, 976
NciI	CCSGG	3 cut(s)	219, 362, 594
NdeII	GATC	4 cut(s)	269, 430, 561, 862
NlaIII	CATG	1 cut(s)	999
NlaIV	GGNNCC	4 cut(s)	554, 627, 643, 816
NmuCI	GTSAC	3 cut(s)	142, 922, 943
PaeR7I	CTCGAG	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	801
PciSI	GCTCTTC	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PfeI	GAWTC	3 cut(s)	197, 254, 740
PflFI	GACNNNGTC	1 cut(s)	941
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	6 cut(s)	8, 81, 400, 700, 913, 916
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
Psp124BI	GAGCTC	2 cut(s)	315, 360
Psp6I	CCWGG	3 cut(s)	493, 810, 834
PspGI	CCWGG	3 cut(s)	493, 810, 834
PspN4I	GGNNCC	4 cut(s)	554, 627, 643, 816
PspPI	GGNCC	2 cut(s)	170, 626
PstI	CTGCAG	1 cut(s)	700
PstNI	CAGNNNCTG	2 cut(s)	917, 941
PsuI	RGATCY	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	941
PvuII	CAGCTG	1 cut(s)	917
RsaI	GTAC	3 cut(s)	474, 764, 777
RsaNI	GTAC	3 cut(s)	473, 763, 776
RseI	CAYNNNNRTG	1 cut(s)	950
SacI	GAGCTC	2 cut(s)	315, 360
SapI	GCTCTTC	1 cut(s)	659
SaqAI	TTAA	2 cut(s)	518, 689
SatI	GCNGC	6 cut(s)	7, 80, 399, 699, 912, 915
Sau3AI	GATC	4 cut(s)	269, 430, 561, 862
Sau96I	GGNCC	2 cut(s)	170, 626
ScaI	AGTACT	1 cut(s)	764
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	6 cut(s)	219, 362, 495, 594, 812, 836
SduI	GDGCHC	4 cut(s)	315, 360, 557, 981
SfaNI	GCATC	1 cut(s)	401
SfcI	CTRYAG	3 cut(s)	234, 390, 696
Sfr274I	CTCGAG	1 cut(s)	350
SlaI	CTCGAG	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	950
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SpeI	ACTAGT	2 cut(s)	17, 778
Sse9I	AATT	6 cut(s)	109, 500, 630, 706, 718, 876
SseBI	AGGCCT	1 cut(s)	801
SsiI	CCGC	4 cut(s)	43, 537, 902, 968
SspI	AATATT	1 cut(s)	372
SspMI	CTAG	4 cut(s)	18, 548, 779, 959
SstI	GAGCTC	2 cut(s)	315, 360
StuI	AGGCCT	1 cut(s)	801
StyD4I	CCNGG	6 cut(s)	217, 360, 493, 592, 810, 834
TaaI	ACNGT	1 cut(s)	477
TaqI	TCGA	4 cut(s)	342, 351, 756, 932
TaqII	GACCGA	1 cut(s)	268
TasI	AATT	6 cut(s)	109, 500, 630, 706, 718, 876
TatI	WGTACW	2 cut(s)	762, 775
TfiI	GAWTC	3 cut(s)	197, 254, 740
Tru1I	TTAA	2 cut(s)	518, 689
Tru9I	TTAA	2 cut(s)	518, 689
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	3 cut(s)	142, 922, 943
TseI	GCWGC	6 cut(s)	6, 79, 398, 698, 911, 914
Tsp45I	GTSAC	3 cut(s)	142, 922, 943
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	1 cut(s)	564
Tth111I	GACNNNGTC	1 cut(s)	941
XapI	RAATTY	2 cut(s)	500, 706
XcmI	CCANNNNNNNNNTGG	2 cut(s)	58, 491
XhoI	CTCGAG	1 cut(s)	350
XspI	CTAG	4 cut(s)	18, 548, 779, 959
ZrmI	AGTACT	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.