MD13G1032500.v1.1

Sec-independent protein translocase protein TATC

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
2295696 .. 2298308
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1032500.v1.1.491

Sequence Viewer

Length: 1077 bp
ATGGGAAGCACCACCTTTGCTTCCATTTCCAACTTGAACTTCATCCGGAATCACACCCACAGCTGCTTCGACCGGCGCGGACCAATCAGAAATCAGCGGGGTTCCGTTCGAGTCCATCACTCCAGGAGGCCGGGACCGGAGGTCAGTGGTCTGCGGAGCCGGAGGAGCCTCCGCGGCGACGTCGTTTGCTGCGCTGTTAATGACGATTTGAGAGAGAAGCAGCAGGAGTCTGGCGCTGAGCCTGGGGTTGGGGTTGGGGTTGGGTCCGCCGTCGAGGAGAGGCCTTCTACTGATTTGGTTGGTGGTGCAAAGGAAGACGATGGAGGAAGTTCAATTTACAATTTTTTGTATCCAAGTCAAGAGCTCCTCCCGGATGATAAAGAGATGACCATATTTGATCATCTGGAAGAGCTGCGTCAGCGAATTTTTATATCAGTTGTAGCGGTTGGAGTTTCTATGGTGGGGTGCTTTGCATATTCGAAAGACCTTATAGTATTTCTCGAAGCTCCAGTTAAAGAACAAGGTGTAAAGTTCCTGCAGCTAGCTCCCGGCGAGTTTTTCTTTACTACCATAAAGGTATCAGGATATTGCGGCCTTCTCTTAGGGAGCCCCATCATTCTGTATGAGCTTATAGCCTTTGTTCTTCCAGGATTAACGAGAGACGAGAGAAAATTTCTGGGGCCAATTGTTTTAGGCTCATCGGTTCTTTTCTACGCTGGTATCACCTTCTCTTATATGGTGCTGACACCCGCAGCCTTGAACTTCTTTGTCACGTATGCAGAAGGTGTTGTGGAATCTTTATGGTCCATTGATCAATACTTTGAGTTCGTACTTGTTCTCATGTTCAGCACAGGCTTGTCGTTCCAGGTTCCGGTTATACAATTTCTCCTGGGACAAGTCGGTCTAGTATCTGGAGACCAAATGCTGTCAATTTGGAGGTATGTTGTGGTTGGTGCCGTTGTGGCAGCTGCTGTGGTTACACCGTCAACGGATCCACTCACTCAGGTCCTTCTGGCAGCACCCCTCCTCGGTCTTTACTTGGGGGGTGCCTGGGTGGTTAAGCTTACTGGCCGGTGA

Protein Analysis

359

Amino Acids

39.03

Weight (kDa)

5.63

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TatC PF00902 133 - 341 1e-66 Sec-independent protein translocase protein (TatC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013511)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 900
AatII GACGTC 1 cut(s) 183
AccB1I GGYRCC 2 cut(s) 953, 1046
AccII CGCG 2 cut(s) 78, 174
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 9 cut(s) 78, 97, 154, 172, 174, 267, 443, 591, 750
AclWI GGATC 2 cut(s) 986, 999
AcoI YGGCCR 1 cut(s) 1069
AcsI RAATTY 2 cut(s) 423, 671
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 1 cut(s) 831
AfiI CCNNNNNNNGG 3 cut(s) 248, 871, 1028
AgsI TTSAA 3 cut(s) 37, 333, 760
AhdI GACNNNNNGTC 1 cut(s) 140
AjnI CCWGG 6 cut(s) 122, 241, 646, 864, 888, 1049
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 9 cut(s) 63, 364, 412, 506, 541, 545, 628, 968, 1063
AluI AGCT 9 cut(s) 63, 364, 412, 506, 541, 545, 628, 968, 1063
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 2 cut(s) 654, 909
AlwI GGATC 2 cut(s) 986, 999
AlwNI CAGNNNCTG 1 cut(s) 971
Aor13HI TCCGGA 1 cut(s) 45
AoxI GGCC 5 cut(s) 128, 281, 592, 680, 1069
ApeKI GCWGC 9 cut(s) 63, 189, 220, 412, 538, 752, 965, 968, 1016
ApoI RAATTY 2 cut(s) 423, 671
AspLEI GCGC 3 cut(s) 78, 194, 236
AspS9I GGNCC 6 cut(s) 80, 134, 264, 680, 804, 1006
AsuC2I CCSGG 3 cut(s) 132, 371, 549
AsuHPI GGTGA 1 cut(s) 715
AsuII TTCGAA 1 cut(s) 479
AsuNHI GCTAGC 1 cut(s) 541
AvaII GGWCC 5 cut(s) 80, 134, 264, 804, 1006
BaeI ACNNNNGTAYC 2 cut(s) 703, 736
BamHI GGATCC 1 cut(s) 991
BanI GGYRCC 2 cut(s) 953, 1046
BanII GRGCYC 2 cut(s) 366, 611
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 9 cut(s) 50, 176, 232, 399, 550, 764, 955, 977, 1028
BccI CCATC 3 cut(s) 123, 314, 620
BceAI ACGGC 2 cut(s) 254, 941
BciT130I CCWGG 6 cut(s) 124, 243, 648, 866, 890, 1051
BciVI GTATCC 1 cut(s) 360
BclI TGATCA 2 cut(s) 397, 811
BcnI CCSGG 3 cut(s) 132, 371, 549
BcoDI GTCTC 2 cut(s) 654, 909
BfaI CTAG 2 cut(s) 542, 905
BfmI CTRYAG 1 cut(s) 536
BfoI RGCGCY 1 cut(s) 237
BfuI GTATCC 1 cut(s) 360
BglI GCCNNNNNGGC 2 cut(s) 174, 962
BlpI GCTNAGC 1 cut(s) 237
Bme1390I CCNGG 9 cut(s) 124, 132, 243, 371, 549, 648, 866, 890, 1051
Bme18I GGWCC 5 cut(s) 80, 134, 264, 804, 1006
BmeRI GACNNNNNGTC 1 cut(s) 140
BmgT120I GGNCC 6 cut(s) 80, 134, 264, 680, 804, 1006
BmrFI CCNGG 9 cut(s) 124, 132, 243, 371, 549, 648, 866, 890, 1051
BmtI GCTAGC 1 cut(s) 545
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 3 cut(s) 106, 492, 933
Bpu1102I GCTNAGC 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 479
BpuMI CCSGG 3 cut(s) 132, 371, 549
BsaAI YACGTR 1 cut(s) 774
BsaHI GRCGYC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 909
BsaJI CCNNGG 5 cut(s) 172, 242, 889, 1027, 1050
BsaWI WCCGGW 3 cut(s) 45, 136, 871
BsaXI ACNNNNNCTCC 2 cut(s) 870, 900
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 871, 1028
Bse118I RCCGGY 2 cut(s) 72, 1071
Bse1I ACTGG 2 cut(s) 509, 1072
BseAI TCCGGA 1 cut(s) 45
BseBI CCWGG 6 cut(s) 124, 243, 648, 866, 890, 1051
BseDI CCNNGG 5 cut(s) 172, 242, 889, 1027, 1050
BseGI GGATG 2 cut(s) 42, 379
BseLI CCNNNNNNNGG 3 cut(s) 248, 871, 1028
BseMII CTCAG 2 cut(s) 228, 1016
BseNI ACTGG 2 cut(s) 509, 1072
BseRI GAGGAG 4 cut(s) 178, 290, 356, 1016
BseXI GCAGC 9 cut(s) 50, 176, 232, 399, 550, 764, 955, 977, 1028
Bsh1236I CGCG 2 cut(s) 78, 174
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 5 cut(s) 130, 283, 594, 682, 1071
BshNI GGYRCC 2 cut(s) 953, 1046
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 9 cut(s) 46, 73, 131, 137, 160, 371, 549, 872, 1072
BslFI GGGAC 2 cut(s) 147, 906
BslI CCNNNNNNNGG 3 cut(s) 248, 871, 1028
BsmAI GTCTC 2 cut(s) 654, 909
BsmBI CGTCTC 1 cut(s) 654
BsmFI GGGAC 2 cut(s) 147, 906
BsnI GGCC 5 cut(s) 130, 283, 594, 682, 1071
Bso31I GGTCTC 1 cut(s) 909
Bsp119I TTCGAA 1 cut(s) 479
Bsp1286I GDGCHC 2 cut(s) 366, 611
Bsp13I TCCGGA 1 cut(s) 45
Bsp143I GATC 3 cut(s) 397, 811, 991
Bsp1720I GCTNAGC 1 cut(s) 237
BspACI CCGC 9 cut(s) 78, 97, 154, 172, 174, 267, 443, 591, 750
BspANI GGCC 5 cut(s) 130, 283, 594, 682, 1071
BspCNI CTCAG 2 cut(s) 229, 1015
BspEI TCCGGA 1 cut(s) 45
BspFNI CGCG 2 cut(s) 78, 174
BspMAI CTGCAG 1 cut(s) 540
BspOI GCTAGC 1 cut(s) 545
BspPI GGATC 2 cut(s) 986, 999
BspQI GCTCTTC 1 cut(s) 402
BspT104I TTCGAA 1 cut(s) 479
BspT107I GGYRCC 2 cut(s) 953, 1046
BspTNI GGTCTC 1 cut(s) 909
BsrFI RCCGGY 2 cut(s) 72, 1071
BsrI ACTGG 2 cut(s) 509, 1072
BssAI RCCGGY 2 cut(s) 72, 1071
BssECI CCNNGG 5 cut(s) 172, 242, 889, 1027, 1050
BssMI GATC 3 cut(s) 397, 811, 991
BssNI GRCGYC 1 cut(s) 180
Bst2UI CCWGG 6 cut(s) 124, 243, 648, 866, 890, 1051
Bst4CI ACNGT 1 cut(s) 984
Bst6I CTCTTC 1 cut(s) 402
BstACI GRCGYC 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 774
BstBI TTCGAA 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 3 cut(s) 237, 601, 1002
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 2 cut(s) 42, 379
BstFNI CGCG 2 cut(s) 78, 174
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 3 cut(s) 78, 194, 236
BstKTI GATC 3 cut(s) 400, 814, 994
BstMAI GTCTC 2 cut(s) 654, 909
BstMBI GATC 3 cut(s) 397, 811, 991
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 4 cut(s) 165, 174, 418, 962
BstNI CCWGG 6 cut(s) 124, 243, 648, 866, 890, 1051
BstSCI CCNGG 9 cut(s) 122, 130, 241, 369, 547, 646, 864, 888, 1049
BstSFI CTRYAG 1 cut(s) 536
BstUI CGCG 2 cut(s) 78, 174
BstV1I GCAGC 9 cut(s) 50, 176, 232, 399, 550, 764, 955, 977, 1028
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 991
BstYI RGATCY 1 cut(s) 991
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 5 cut(s) 130, 283, 594, 682, 1071
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 2 cut(s) 42, 379
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 543
CaiI CAGNNNCTG 1 cut(s) 971
CfoI GCGC 3 cut(s) 78, 194, 236
Cfr10I RCCGGY 2 cut(s) 72, 1071
Cfr13I GGNCC 6 cut(s) 80, 134, 264, 680, 804, 1006
Cfr42I CCGCGG 1 cut(s) 175
CseI GACGC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 830
CviAII CATG 1 cut(s) 841
CviQI GTAC 1 cut(s) 830
DdeI CTNAG 3 cut(s) 237, 601, 1002
DpnI GATC 3 cut(s) 399, 813, 993
DpnII GATC 3 cut(s) 397, 811, 991
DrdI GACNNNNNNGTC 1 cut(s) 900
DriI GACNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 900
EaeI YGGCCR 1 cut(s) 1069
Eam1104I CTCTTC 1 cut(s) 402
Eam1105I GACNNNNNGTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 402
EciI GGCGGA 1 cut(s) 256
Ecl136II GAGCTC 1 cut(s) 364
Eco147I AGGCCT 1 cut(s) 283
Eco24I GRGCYC 2 cut(s) 366, 611
Eco31I GGTCTC 1 cut(s) 909
Eco47I GGWCC 5 cut(s) 80, 134, 264, 804, 1006
Eco53kI GAGCTC 1 cut(s) 364
EcoICRI GAGCTC 1 cut(s) 364
EcoO109I RGGNCCY 1 cut(s) 1006
EcoRII CCWGG 6 cut(s) 122, 241, 646, 864, 888, 1049
EcoT38I GRGCYC 2 cut(s) 366, 611
Esp3I CGTCTC 1 cut(s) 654
FaeI CATG 1 cut(s) 844
FaqI GGGAC 2 cut(s) 147, 906
FatI CATG 1 cut(s) 840
FauI CCCGC 2 cut(s) 90, 757
FbaI TGATCA 2 cut(s) 397, 811
FokI GGATG 2 cut(s) 29, 386
FriOI GRGCYC 2 cut(s) 366, 611
FspBI CTAG 2 cut(s) 542, 905
GlaI GCGC 3 cut(s) 77, 193, 235
GsuI CTGGAG 3 cut(s) 106, 492, 933
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 5 cut(s) 130, 283, 594, 682, 1071
HapII CCGG 9 cut(s) 46, 73, 131, 137, 160, 371, 549, 872, 1072
HgaI GACGC 1 cut(s) 404
HhaI GCGC 3 cut(s) 78, 194, 236
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 1 cut(s) 844
Hin6I GCGC 3 cut(s) 76, 192, 234
HinP1I GCGC 3 cut(s) 76, 192, 234
HincII GTYRAC 1 cut(s) 987
HindII GTYRAC 1 cut(s) 987
HindIII AAGCTT 1 cut(s) 1061
HinfI GANTC 4 cut(s) 49, 111, 227, 794
HpaII CCGG 9 cut(s) 46, 73, 131, 137, 160, 371, 549, 872, 1072
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 1 cut(s) 987
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 6 cut(s) 46, 359, 404, 500, 582, 912
Hpy8I GTNNAC 1 cut(s) 987
Hpy99I CGWCG 3 cut(s) 182, 185, 275
HpyAV CCTTC 5 cut(s) 294, 605, 736, 776, 1019
HpyCH4III ACNGT 1 cut(s) 984
HpyCH4IV ACGT 2 cut(s) 180, 773
HpyCH4V TGCA 4 cut(s) 308, 473, 538, 779
HpyF10VI GCNNNNNNNGC 4 cut(s) 165, 174, 418, 962
HpyF3I CTNAG 3 cut(s) 237, 601, 1002
HpySE526I ACGT 2 cut(s) 180, 773
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 1 cut(s) 844
HspAI GCGC 3 cut(s) 76, 192, 234
Kpn2I TCCGGA 1 cut(s) 45
Ksp22I TGATCA 2 cut(s) 397, 811
KspI CCGCGG 1 cut(s) 175
Kzo9I GATC 3 cut(s) 397, 811, 991
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 6 cut(s) 156, 165, 369, 511, 550, 606
Lsp1109I GCAGC 9 cut(s) 50, 176, 232, 399, 550, 764, 955, 977, 1028
MaeI CTAG 2 cut(s) 542, 905
MaeII ACGT 2 cut(s) 180, 773
MaeIII GTNAC 2 cut(s) 769, 976
MalI GATC 3 cut(s) 399, 813, 993
MboI GATC 3 cut(s) 397, 811, 991
MboII GAAGA 3 cut(s) 326, 419, 635
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 1 cut(s) 991
MhlI GDGCHC 2 cut(s) 366, 611
MluCI AATT 7 cut(s) 333, 340, 423, 671, 684, 881, 930
MlyI GAGTC 2 cut(s) 120, 236
MmeI TCCRAC 2 cut(s) 54, 427
MroI TCCGGA 1 cut(s) 45
MseI TTAA 4 cut(s) 198, 513, 653, 1059
MspA1I CMGCKG 4 cut(s) 63, 97, 174, 968
MspI CCGG 9 cut(s) 46, 73, 131, 137, 160, 371, 549, 872, 1072
MspR9I CCNGG 9 cut(s) 124, 132, 243, 371, 549, 648, 866, 890, 1051
MunI CAATTG 1 cut(s) 684
MvaI CCWGG 6 cut(s) 124, 243, 648, 866, 890, 1051
MvnI CGCG 2 cut(s) 78, 174
MwoI GCNNNNNNNGC 4 cut(s) 165, 174, 418, 962
NciI CCSGG 3 cut(s) 132, 371, 549
NdeII GATC 3 cut(s) 397, 811, 991
NheI GCTAGC 1 cut(s) 541
NlaIII CATG 1 cut(s) 844
NmuCI GTSAC 1 cut(s) 769
NspV TTCGAA 1 cut(s) 479
PceI AGGCCT 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 49, 794
PfoI TCCNGGA 3 cut(s) 122, 369, 646
PleI GAGTC 2 cut(s) 119, 235
PpsI GAGTC 2 cut(s) 119, 235
Ppu21I YACGTR 1 cut(s) 774
PpuMI RGGWCCY 1 cut(s) 1006
Psp124BI GAGCTC 1 cut(s) 366
Psp5II RGGWCCY 1 cut(s) 1006
Psp6I CCWGG 6 cut(s) 122, 241, 646, 864, 888, 1049
PspGI CCWGG 6 cut(s) 122, 241, 646, 864, 888, 1049
PspPI GGNCC 6 cut(s) 80, 134, 264, 680, 804, 1006
PspPPI RGGWCCY 1 cut(s) 1006
PstI CTGCAG 1 cut(s) 540
PstNI CAGNNNCTG 1 cut(s) 971
PsuI RGATCY 1 cut(s) 991
PvuII CAGCTG 2 cut(s) 63, 968
RsaI GTAC 1 cut(s) 831
RsaNI GTAC 1 cut(s) 830
SacI GAGCTC 1 cut(s) 366
SacII CCGCGG 1 cut(s) 175
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 4 cut(s) 198, 513, 653, 1059
Sau3AI GATC 3 cut(s) 397, 811, 991
Sau96I GGNCC 6 cut(s) 80, 134, 264, 680, 804, 1006
SchI GAGTC 2 cut(s) 120, 236
ScrFI CCNGG 9 cut(s) 124, 132, 243, 371, 549, 648, 866, 890, 1051
SduI GDGCHC 2 cut(s) 366, 611
SfcI CTRYAG 1 cut(s) 536
Sfr303I CCGCGG 1 cut(s) 175
SfuI TTCGAA 1 cut(s) 479
SgrBI CCGCGG 1 cut(s) 175
SinI GGWCC 5 cut(s) 80, 134, 264, 804, 1006
Sse9I AATT 7 cut(s) 333, 340, 423, 671, 684, 881, 930
SseBI AGGCCT 1 cut(s) 283
SsiI CCGC 9 cut(s) 78, 97, 154, 172, 174, 267, 443, 591, 750
SspMI CTAG 2 cut(s) 542, 905
SstI GAGCTC 1 cut(s) 366
StuI AGGCCT 1 cut(s) 283
StyD4I CCNGG 9 cut(s) 122, 130, 241, 369, 547, 646, 864, 888, 1049
TaaI ACNGT 1 cut(s) 984
TaiI ACGT 2 cut(s) 183, 776
TaqI TCGA 5 cut(s) 69, 109, 273, 479, 501
TaqII GACCGA 2 cut(s) 890, 1019
TasI AATT 7 cut(s) 333, 340, 423, 671, 684, 881, 930
TauI GCSGC 2 cut(s) 177, 594
TfiI GAWTC 2 cut(s) 49, 794
Tru1I TTAA 4 cut(s) 198, 513, 653, 1059
Tru9I TTAA 4 cut(s) 198, 513, 653, 1059
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 769
TseI GCWGC 9 cut(s) 63, 189, 220, 412, 538, 752, 965, 968, 1016
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 1 cut(s) 31
TspGWI ACGGA 2 cut(s) 94, 1004
TspRI CASTG 1 cut(s) 151
VpaK11BI GGWCC 5 cut(s) 80, 134, 264, 804, 1006
XapI RAATTY 2 cut(s) 423, 671
XspI CTAG 2 cut(s) 542, 905
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.