Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013511

Physical Location & Seq

Genomic Coordinates Reverse (-)

27794751 .. 27796615

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26390.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGAAGCACGAGCTGTGCTTCCATTTCCAATCTACACTTCATTCCAAATCGCAGCCACGAGCGGCTCGGCCCTATCAGAAACCAGCTAGCTCCGGCGCACTATTCGAGGCGGCGGAGATTGGAGCTTAGCGGTTTAAGAAGCCGGAGGAGGTTGAGAAGCGACGTCGTTTGCTCTGCCGTGGATGACGATTTGAGAGAGAAGGAGTTCGGTGCTGGGCCTGGGCCTGGGCTTGGCTCCGCCGTCGAAGATAGACCTGATGAGGTTGATGAAAAATCGAAAGAAGAGGAAGGAAGTTCGATTTACAATTTTTTATATCCGAGTCAAGAGCTACTGCCGGATGATAAAGAGATGAGTATATTTGATCATCTTGAAGAGCTGCGTCAGAGATTATTTGTATCAGTTGCAGCGGTGGGAGTTGCTATGTTGGGATGCTTTGCGGTTTCAAAGGATCTTATAGTGTTTCTTGAAGCTCCTGTTAAGACGCAAGGTGTAAAGTTTCTGCAGCTCGCTCCTGGCGAGTTCTTCTTCACTACTTTAAAGGTGTCAGGGTATTGTGGCCTTCTCTTAGGGAGTCCAGTTATTCTGTATGAAATCATAGCCTTTGTGCTGCCAGGATTAACGAGAGACGAGAGGAAATTTCTGGGGCCGATTGTTTTAGGTTCATCAGTACTTTTCTATGCTGGTATCAGCTTCTCCTATTTTGTTTTGGTGCCAGCAGCCTTGAACTTTTTTGTCACCTACGCCGAAGGTGTTGTGGAATCATTGTGGTCCATAGATCAGTACTTTGAATTCGTTCTCGTGCTATTGTTCAGCACAGGCTTGTCCTTCCAGGTCCCAGTCATACAAGTTCTCCTTGGACAAGTTGGTCTAGTATCAGGAGATCAAATGCTGTCAATTTGGAGGTATGTTGTGGTCGGTGCTGTTGTGGTAGCTGCTGTGCTTACACCGTCAACCGATCCACTCACTCAGTGTCTTCTAGCGGCACCTCTCCTTGGTCTTTACTTGGGTGGTGCCTGGTTGGTGAAGCTCAGTGGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009566 GO:0009567 GO:0009579 GO:0009657 GO:0009668 GO:0009977 GO:0009987 GO:0010027 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022414 GO:0022804 GO:0022857 GO:0022884 GO:0031224 GO:0031360 GO:0031361 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043235 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055035 GO:0055085 GO:0061024 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0098796 GO:0098797 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

TatC

Protein Analysis

348

Amino Acids

38.04

Weight (kDa)

5.39

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatC	PF00902	122 - 280	9.5e-47	Sec-independent protein translocase protein (TatC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01110
fragaria_vesca	FvH4_4g26390 FvH4_4g26390
malus_domestica	MD13G1032500.v1.1 MD16G1034600.v1.1
prunus_persica	Prupe.1G320000_v2.0.a1
pyrus_communis	pycom16g02940
rosa_chinensis	RchiOBHm_Chr4g0434021
rosa_laevigata	RLG00000006708
rosa_multiflora	Rmu_sc0000352.1_g000022 Rmu_sc0000352.1_g000024
rosa_roxburghii	Rroxscaffold_5G00375430
rosa_rugosa	Rorug04G0272700
rosa_samantha	Rh4AG328400 Rh4BG335700 Rh4CG351200 Rh4DG332100
rosa_wichuraiana	Rw4G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	867
AatII	GACGTC	1 cut(s)	168
AccB1I	GGYRCC	3 cut(s)	712, 985, 1013
AccBSI	CCGCTC	1 cut(s)	64
AciI	CCGC	8 cut(s)	64, 112, 115, 132, 240, 410, 440, 983
AclWI	GGATC	2 cut(s)	459, 953
AcoI	YGGCCR	1 cut(s)	1036
AcsI	RAATTY	2 cut(s)	638, 791
AcyI	GRCGYC	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	972
AfaI	GTAC	2 cut(s)	672, 785
AfiI	CCNNNNNNNGG	3 cut(s)	227, 233, 995
AgsI	TTSAA	5 cut(s)	374, 447, 470, 727, 791
AjnI	CCWGG	6 cut(s)	220, 226, 514, 613, 831, 1016
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
Alw26I	GTCTC	1 cut(s)	621
AlwI	GGATC	2 cut(s)	459, 953
AoxI	GGCC	6 cut(s)	70, 218, 224, 559, 647, 1036
ApeKI	GCWGC	7 cut(s)	54, 379, 407, 505, 610, 719, 935
ApoI	RAATTY	2 cut(s)	638, 791
Asp700I	GAANNNNTTC	2 cut(s)	206, 795
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	6 cut(s)	71, 218, 224, 647, 771, 835
AsuHPI	GGTGA	2 cut(s)	730, 1036
AsuNHI	GCTAGC	1 cut(s)	88
AvaII	GGWCC	2 cut(s)	771, 835
BanI	GGYRCC	3 cut(s)	712, 985, 1013
BauI	CACGAG	3 cut(s)	10, 59, 800
BbsI	GAAGAC	1 cut(s)	968
BbvI	GCAGC	7 cut(s)	66, 366, 419, 517, 597, 731, 922
BceAI	ACGGC	2 cut(s)	164, 227
BciT130I	CCWGG	6 cut(s)	222, 228, 516, 615, 833, 1018
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	621
BfaI	CTAG	3 cut(s)	89, 872, 980
BfmI	CTRYAG	1 cut(s)	503
BlpI	GCTNAGC	1 cut(s)	128
BmcAI	AGTACT	2 cut(s)	672, 785
Bme1390I	CCNGG	6 cut(s)	222, 228, 516, 615, 833, 1018
Bme18I	GGWCC	2 cut(s)	771, 835
BmgT120I	GGNCC	6 cut(s)	71, 218, 224, 647, 771, 835
BmiI	GGNNCC	6 cut(s)	238, 648, 714, 837, 987, 1015
BmrFI	CCNGG	6 cut(s)	222, 228, 516, 615, 833, 1018
BmrI	ACTGGG	1 cut(s)	833
BmsI	GCATC	1 cut(s)	422
BmtI	GCTAGC	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	833
BpiI	GAAGAC	1 cut(s)	968
Bpu1102I	GCTNAGC	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	5 cut(s)	180, 221, 227, 856, 994
BsaXI	ACNNNNNCTCC	2 cut(s)	837, 867
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 233, 995
Bse118I	RCCGGY	1 cut(s)	1038
Bse1I	ACTGG	2 cut(s)	578, 839
BseBI	CCWGG	6 cut(s)	222, 228, 516, 615, 833, 1018
BseDI	CCNNGG	5 cut(s)	180, 221, 227, 856, 994
BseGI	GGATG	3 cut(s)	190, 346, 437
BseLI	CCNNNNNNNGG	3 cut(s)	227, 233, 995
BseMII	CTCAG	1 cut(s)	983
BseNI	ACTGG	2 cut(s)	578, 839
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	7 cut(s)	66, 366, 419, 517, 597, 731, 922
BseYI	CCCAGC	1 cut(s)	215
BshFI	GGCC	6 cut(s)	72, 220, 226, 561, 649, 1038
BshNI	GGYRCC	3 cut(s)	712, 985, 1013
BsiSI	CCGG	4 cut(s)	95, 145, 338, 1039
BslFI	GGGAC	1 cut(s)	821
BslI	CCNNNNNNNGG	3 cut(s)	227, 233, 995
BsmAI	GTCTC	1 cut(s)	621
BsmBI	CGTCTC	1 cut(s)	621
BsmFI	GGGAC	1 cut(s)	821
BsnI	GGCC	6 cut(s)	72, 220, 226, 561, 649, 1038
Bsp143I	GATC	5 cut(s)	364, 451, 778, 883, 958
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	8 cut(s)	64, 112, 115, 132, 240, 410, 440, 983
BspANI	GGCC	6 cut(s)	72, 220, 226, 561, 649, 1038
BspCNI	CTCAG	2 cut(s)	982, 1044
BspLI	GGNNCC	6 cut(s)	238, 648, 714, 837, 987, 1015
BspMAI	CTGCAG	1 cut(s)	507
BspOI	GCTAGC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	459, 953
BspQI	GCTCTTC	1 cut(s)	369
BspT107I	GGYRCC	3 cut(s)	712, 985, 1013
BsrBI	CCGCTC	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	1038
BsrI	ACTGG	2 cut(s)	578, 839
BssAI	RCCGGY	1 cut(s)	1038
BssECI	CCNNGG	5 cut(s)	180, 221, 227, 856, 994
BssMI	GATC	5 cut(s)	364, 451, 778, 883, 958
BssNI	GRCGYC	1 cut(s)	165
BssSI	CACGAG	3 cut(s)	10, 59, 800
BssT1I	CCWWGG	2 cut(s)	856, 994
Bst2BI	CACGAG	3 cut(s)	10, 59, 800
Bst2UI	CCWGG	6 cut(s)	222, 228, 516, 615, 833, 1018
Bst4CI	ACNGT	1 cut(s)	951
Bst6I	CTCTTC	2 cut(s)	279, 369
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	90, 510, 717
BstDEI	CTNAG	4 cut(s)	128, 568, 969, 1031
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	3 cut(s)	190, 346, 437
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	5 cut(s)	367, 454, 781, 886, 961
BstMAI	GTCTC	1 cut(s)	621
BstMBI	GATC	5 cut(s)	364, 451, 778, 883, 958
BstNI	CCWGG	6 cut(s)	222, 228, 516, 615, 833, 1018
BstSCI	CCNGG	6 cut(s)	220, 226, 514, 613, 831, 1016
BstSFI	CTRYAG	1 cut(s)	503
BstV1I	GCAGC	7 cut(s)	66, 366, 419, 517, 597, 731, 922
BstV2I	GAAGAC	1 cut(s)	968
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	6 cut(s)	72, 220, 226, 561, 649, 1038
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	190, 346, 437
BtsIMutI	CAGTG	2 cut(s)	977, 1039
Cac8I	GCNNGC	3 cut(s)	90, 510, 717
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	1038
Cfr13I	GGNCC	6 cut(s)	71, 218, 224, 647, 771, 835
CseI	GACGC	2 cut(s)	371, 493
Csp6I	GTAC	2 cut(s)	671, 784
CviQI	GTAC	2 cut(s)	671, 784
DdeI	CTNAG	4 cut(s)	128, 568, 969, 1031
DpnI	GATC	5 cut(s)	366, 453, 780, 885, 960
DpnII	GATC	5 cut(s)	364, 451, 778, 883, 958
DraI	TTTAAA	1 cut(s)	540
DraIII	CACNNNGTG	1 cut(s)	972
DrdI	GACNNNNNNGTC	1 cut(s)	867
DseDI	GACNNNNNNGTC	1 cut(s)	867
EaeI	YGGCCR	1 cut(s)	1036
Eam1104I	CTCTTC	2 cut(s)	279, 369
EarI	CTCTTC	2 cut(s)	279, 369
EciI	GGCGGA	2 cut(s)	130, 229
Eco130I	CCWWGG	2 cut(s)	856, 994
Eco47I	GGWCC	2 cut(s)	771, 835
EcoO109I	RGGNCCY	1 cut(s)	835
EcoRI	GAATTC	1 cut(s)	791
EcoRII	CCWGG	6 cut(s)	220, 226, 514, 613, 831, 1016
EcoT14I	CCWWGG	2 cut(s)	856, 994
ErhI	CCWWGG	2 cut(s)	856, 994
Esp3I	CGTCTC	1 cut(s)	621
FalI	AAGNNNNNCTT	2 cut(s)	840, 872
FaqI	GGGAC	1 cut(s)	821
FbaI	TGATCA	1 cut(s)	364
FokI	GGATG	3 cut(s)	197, 353, 444
FspBI	CTAG	3 cut(s)	89, 872, 980
GlaI	GCGC	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	219
HaeIII	GGCC	6 cut(s)	72, 220, 226, 561, 649, 1038
HapII	CCGG	4 cut(s)	95, 145, 338, 1039
HgaI	GACGC	2 cut(s)	371, 493
HhaI	GCGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HinfI	GANTC	3 cut(s)	322, 574, 761
HpaII	CCGG	4 cut(s)	95, 145, 338, 1039
HphI	GGTGA	2 cut(s)	730, 1036
Hpy166II	GTNNAC	1 cut(s)	954
Hpy188I	TCNGA	3 cut(s)	80, 321, 387
Hpy188III	TCNNGA	4 cut(s)	326, 371, 467, 879
Hpy8I	GTNNAC	1 cut(s)	954
Hpy99I	CGWCG	3 cut(s)	167, 170, 248
HpyAV	CCTTC	5 cut(s)	196, 284, 572, 743, 838
HpyCH4III	ACNGT	1 cut(s)	951
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	407, 505
HpyF3I	CTNAG	4 cut(s)	128, 568, 969, 1031
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	1 cut(s)	165
HspAI	GCGC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	5 cut(s)	364, 451, 778, 883, 958
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	5 cut(s)	97, 124, 242, 478, 517
Lsp1109I	GCAGC	7 cut(s)	66, 366, 419, 517, 597, 731, 922
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	3 cut(s)	89, 872, 980
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	736
MalI	GATC	5 cut(s)	366, 453, 780, 885, 960
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	5 cut(s)	364, 451, 778, 883, 958
MboII	GAAGA	6 cut(s)	260, 296, 386, 517, 520, 968
MflI	RGATCY	1 cut(s)	451
MluCI	AATT	4 cut(s)	307, 638, 791, 897
MlyI	GAGTC	2 cut(s)	331, 583
MnlI	CCTC	8 cut(s)	102, 141, 144, 256, 280, 627, 897, 999
MroXI	GAANNNNTTC	2 cut(s)	206, 795
MseI	TTAA	4 cut(s)	137, 480, 539, 620
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	4 cut(s)	95, 145, 338, 1039
MspR9I	CCNGG	6 cut(s)	222, 228, 516, 615, 833, 1018
MvaI	CCWGG	6 cut(s)	222, 228, 516, 615, 833, 1018
NdeII	GATC	5 cut(s)	364, 451, 778, 883, 958
NheI	GCTAGC	1 cut(s)	88
NlaIV	GGNNCC	6 cut(s)	238, 648, 714, 837, 987, 1015
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	736
PciSI	GCTCTTC	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PdmI	GAANNNNTTC	2 cut(s)	206, 795
PfeI	GAWTC	1 cut(s)	761
PleI	GAGTC	2 cut(s)	330, 582
PpsI	GAGTC	2 cut(s)	330, 582
PpuMI	RGGWCCY	1 cut(s)	835
Psp5II	RGGWCCY	1 cut(s)	835
Psp6I	CCWGG	6 cut(s)	220, 226, 514, 613, 831, 1016
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	6 cut(s)	220, 226, 514, 613, 831, 1016
PspN4I	GGNNCC	6 cut(s)	238, 648, 714, 837, 987, 1015
PspPI	GGNCC	6 cut(s)	71, 218, 224, 647, 771, 835
PspPPI	RGGWCCY	1 cut(s)	835
PstI	CTGCAG	1 cut(s)	507
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	2 cut(s)	672, 785
RsaNI	GTAC	2 cut(s)	671, 784
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	4 cut(s)	137, 480, 539, 620
Sau3AI	GATC	5 cut(s)	364, 451, 778, 883, 958
Sau96I	GGNCC	6 cut(s)	71, 218, 224, 647, 771, 835
ScaI	AGTACT	2 cut(s)	672, 785
SchI	GAGTC	2 cut(s)	331, 583
ScrFI	CCNGG	6 cut(s)	222, 228, 516, 615, 833, 1018
SfaNI	GCATC	1 cut(s)	422
SfcI	CTRYAG	1 cut(s)	503
SinI	GGWCC	2 cut(s)	771, 835
Sse9I	AATT	4 cut(s)	307, 638, 791, 897
SsiI	CCGC	8 cut(s)	64, 112, 115, 132, 240, 410, 440, 983
SspMI	CTAG	3 cut(s)	89, 872, 980
StyD4I	CCNGG	6 cut(s)	220, 226, 514, 613, 831, 1016
StyI	CCWWGG	2 cut(s)	856, 994
TaaI	ACNGT	1 cut(s)	951
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	4 cut(s)	107, 246, 278, 299
TasI	AATT	4 cut(s)	307, 638, 791, 897
TatI	WGTACW	2 cut(s)	670, 783
TauI	GCSGC	3 cut(s)	67, 115, 986
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	4 cut(s)	137, 480, 539, 620
Tru9I	TTAA	4 cut(s)	137, 480, 539, 620
TscAI	CASTG	2 cut(s)	977, 1039
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	7 cut(s)	54, 379, 407, 505, 610, 719, 935
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	4 cut(s)	31, 285, 606, 654
TspRI	CASTG	2 cut(s)	977, 1039
VpaK11BI	GGWCC	2 cut(s)	771, 835
XapI	RAATTY	2 cut(s)	638, 791
XmnI	GAANNNNTTC	2 cut(s)	206, 795
XspI	CTAG	3 cut(s)	89, 872, 980
ZraI	GACGTC	1 cut(s)	166
ZrmI	AGTACT	2 cut(s)	672, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.