Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013511

Physical Location & Seq

Genomic Coordinates Forward (+)

44526370 .. 44527299

Gene Structure 930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0272700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGTGTGTTCACATACGAAACCGAGTTCACCTCAGTCATCCCACCACCTAAGTTGTTCAAGGCTTTCGTCCTTGATGCCGACAACCTCATCCCCAAGATTGCCCCTCAGGCTGTGAAGAGTGCCGAAATCGTTGAAGGAGATGGAGGTGTTGGAACCATCAAGAAGATCCACCTTGGTGAAGGAAGTGAATACAGCTATGTGAAGCACAAGATCGACGGAATCGACAAAGACAACTTTGTGTACAACTACAGCATCATTGAAGGAGATGCTATCGGAGACAAGATTGAGAAGATCTCCTATGAGATTAAGTTGGTGGCATCCAGCGGAGGTTCCATAATCAAGAGCACCAGTCACTACCACACCAAGGGTGAGGTCGATATCAAGGAAGAGCATGTTAAGGCCGGAAAAGATAGAGCCGCTGGTCTGTTCAAGATCATTGAGAACCATCTCTTGGCCCATCCCGAGGAATACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009566 GO:0009567 GO:0009579 GO:0009657 GO:0009668 GO:0009977 GO:0009987 GO:0010027 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022414 GO:0022804 GO:0022857 GO:0022884 GO:0031224 GO:0031360 GO:0031361 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043235 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055035 GO:0055085 GO:0061024 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0098796 GO:0098797 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

TatC

Protein Analysis

159

Amino Acids

17.48

Weight (kDa)

5.63

Isoelectric Point (pI)

21.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	1 - 154	4.3e-25	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01110
fragaria_vesca	FvH4_4g26390 FvH4_4g26390
malus_domestica	MD13G1032500.v1.1 MD16G1034600.v1.1
prunus_persica	Prupe.1G320000_v2.0.a1
pyrus_communis	pycom16g02940
rosa_chinensis	RchiOBHm_Chr4g0434021
rosa_laevigata	RLG00000006708
rosa_multiflora	Rmu_sc0000352.1_g000022 Rmu_sc0000352.1_g000024
rosa_roxburghii	Rroxscaffold_5G00375430
rosa_rugosa	Rorug04G0272700
rosa_samantha	Rh4AG328400 Rh4BG335700 Rh4CG351200 Rh4DG332100
rosa_wichuraiana	Rw4G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	454
AciI	CCGC	2 cut(s)	327, 420
AclWI	GGATC	1 cut(s)	163
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	3 cut(s)	367, 454, 466
AgsI	TTSAA	4 cut(s)	61, 137, 263, 433
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AleI	CACNNNNGTG	1 cut(s)	177
AluBI	AGCT	1 cut(s)	198
AluI	AGCT	1 cut(s)	198
Alw21I	GWGCWC	1 cut(s)	350
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	163
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	2 cut(s)	402, 456
AspS9I	GGNCC	1 cut(s)	457
AsuHPI	GGTGA	3 cut(s)	22, 191, 383
AvaI	CYCGRG	1 cut(s)	464
AxyI	CCTNAGG	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	350
BccI	CCATC	4 cut(s)	137, 167, 456, 468
BcoDI	GTCTC	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	250
BglI	GCCNNNNNGGC	1 cut(s)	110
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	2 cut(s)	157, 334
BmsI	GCATC	4 cut(s)	67, 259, 264, 329
BplI	GAGNNNNNCTC	4 cut(s)	17, 49, 281, 313
BsaJI	CCNNGG	3 cut(s)	175, 366, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	367, 454, 466
Bse1I	ACTGG	1 cut(s)	351
Bse21I	CCTNAGG	1 cut(s)	108
BseDI	CCNNGG	3 cut(s)	175, 366, 465
BseGI	GGATG	4 cut(s)	39, 90, 320, 460
BseLI	CCNNNNNNNGG	3 cut(s)	367, 454, 466
BseMII	CTCAG	2 cut(s)	48, 122
BseNI	ACTGG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	404, 458
BsiHKAI	GWGCWC	1 cut(s)	350
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	405
BslI	CCNNNNNNNGG	3 cut(s)	367, 454, 466
BsmAI	GTCTC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	404, 458
BsoBI	CYCGRG	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	4 cut(s)	168, 213, 294, 435
BspACI	CCGC	2 cut(s)	327, 420
BspANI	GGCC	2 cut(s)	404, 458
BspCNI	CTCAG	2 cut(s)	47, 121
BspLI	GGNNCC	2 cut(s)	157, 334
BspPI	GGATC	1 cut(s)	163
BspQI	GCTCTTC	1 cut(s)	384
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	351
BssECI	CCNNGG	3 cut(s)	175, 366, 465
BssMI	GATC	4 cut(s)	168, 213, 294, 435
BssT1I	CCWWGG	2 cut(s)	175, 366
Bst6I	CTCTTC	2 cut(s)	113, 384
BstAUI	TGTACA	1 cut(s)	243
BstDEI	CTNAG	3 cut(s)	34, 51, 108
BstF5I	GGATG	4 cut(s)	39, 90, 320, 460
BstKTI	GATC	4 cut(s)	171, 216, 297, 438
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	4 cut(s)	168, 213, 294, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	250
BstX2I	RGATCY	2 cut(s)	168, 294
BstYI	RGATCY	2 cut(s)	168, 294
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	404, 458
BtsCI	GGATG	4 cut(s)	39, 90, 320, 460
Cfr13I	GGNCC	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	244
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	1 cut(s)	395
CviJI	RGCY	6 cut(s)	65, 113, 198, 404, 419, 458
CviKI_1	RGCY	6 cut(s)	65, 113, 198, 404, 419, 458
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	3 cut(s)	34, 51, 108
DpnI	GATC	4 cut(s)	170, 215, 296, 437
DpnII	GATC	4 cut(s)	168, 213, 294, 435
Eam1104I	CTCTTC	2 cut(s)	113, 384
EarI	CTCTTC	2 cut(s)	113, 384
Eco130I	CCWWGG	2 cut(s)	175, 366
Eco32I	GATATC	1 cut(s)	382
Eco81I	CCTNAGG	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	464
EcoRV	GATATC	1 cut(s)	382
EcoT14I	CCWWGG	2 cut(s)	175, 366
ErhI	CCWWGG	2 cut(s)	175, 366
FaeI	CATG	1 cut(s)	398
FaiI	YATR	5 cut(s)	16, 201, 303, 338, 396
FatI	CATG	1 cut(s)	394
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	4 cut(s)	26, 77, 307, 447
Fsp4HI	GCNGC	1 cut(s)	420
GluI	GCNGC	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	404, 458
HapII	CCGG	1 cut(s)	405
Hin1II	CATG	1 cut(s)	398
HinfI	GANTC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	3 cut(s)	22, 191, 383
Hpy166II	GTNNAC	3 cut(s)	12, 30, 244
Hpy188I	TCNGA	1 cut(s)	278
Hpy188III	TCNNGA	4 cut(s)	163, 343, 433, 464
Hpy8I	GTNNAC	3 cut(s)	12, 30, 244
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	3 cut(s)	131, 176, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	3 cut(s)	34, 51, 108
Hsp92II	CATG	1 cut(s)	398
Kzo9I	GATC	4 cut(s)	168, 213, 294, 435
LguI	GCTCTTC	1 cut(s)	384
LpnPI	CCDG	5 cut(s)	95, 337, 364, 408, 418
LweI	GCATC	4 cut(s)	67, 259, 264, 329
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	4 cut(s)	170, 215, 296, 437
MboI	GATC	4 cut(s)	168, 213, 294, 435
MboII	GAAGA	4 cut(s)	130, 178, 304, 401
MflI	RGATCY	2 cut(s)	168, 294
MhlI	GDGCHC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	7 cut(s)	43, 98, 117, 140, 323, 367, 460
MseI	TTAA	2 cut(s)	309, 399
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	2 cut(s)	327, 422
MspI	CCGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	4 cut(s)	168, 213, 294, 435
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	2 cut(s)	157, 334
NmuCI	GTSAC	1 cut(s)	353
NspI	RCATGY	1 cut(s)	398
OliI	CACNNNNGTG	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	222
PflMI	CCANNNNNTGG	1 cut(s)	454
PkrI	GCNGC	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	157, 334
PspPI	GGNCC	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	168, 294
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	309, 399
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	4 cut(s)	168, 213, 294, 435
Sau96I	GGNCC	1 cut(s)	457
SduI	GDGCHC	1 cut(s)	350
SetI	ASST	8 cut(s)	35, 52, 90, 151, 177, 200, 334, 378
SfaNI	GCATC	4 cut(s)	67, 259, 264, 329
SfcI	CTRYAG	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	177
SsiI	CCGC	2 cut(s)	327, 420
StyI	CCWWGG	2 cut(s)	175, 366
TaqI	TCGA	3 cut(s)	216, 225, 378
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	2 cut(s)	309, 399
Tru9I	TTAA	2 cut(s)	309, 399
TseFI	GTSAC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	353
TspGWI	ACGGA	1 cut(s)	234
Van91I	CCANNNNNTGG	1 cut(s)	454
XceI	RCATGY	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.