Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000352.1

Orthogroup ID

OG0013511

Physical Location & Seq

Genomic Coordinates Reverse (-)

89447 .. 91189

Gene Structure 1743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000352.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgggaagcacgagctgtgcttccatttccaatttacacttcatttcaaatcgcagccacgagcggctcggcccaatcagaaaccagctagctccggttcaagctcgagcgcactactcgaggaggcggagactggagcttaatggtttacggagccggaggaggttgaggaacgacgtcgtttgctctgcggttgatgacgatttgagagagaacgagtctgctgctaggcctgggcttggctccgccgtcgaagataggcctgatgtggttgatgagtcgaaagaagaggaaggaagttcgatttacaattttctatatccgagtcaagagctactcccggatgataaagagatgagtatatttgatcatcttgaagagctgcgtcagagagtatttgtatcagttgcagcagtgggagttgctatgttgggatgctttgcagtttcgaaagatcttatagtgtttcttgaagctcctgttaaaacacaaggcgtaaagtttctgcagcttgctcctggcgagtttttcttcactactttaaaggtgtcaggatattgtggccttctcttagggagtccaatcattctttatgaaatcatagcctttgtgcttccagggttaacgagagacgagagaaagtttctggggccaatagttttaggctcatcagtacttttttatgctggtatcagcttctcctatttcgttttggtgccagcagccttgaatttttttgttacttatgctgaaggagttgtggaatcattgtggtccatagatcagtactttgaattcgtactcgtgctactgttcagcacaggcttgtccttccaggttccagtcatacaagttctccttggacaagttggtctggtatcaggagatcaaatgctgtcaatttggaggtatgttgtggttggtgctgttgtggcagctgccgtgcttacaccatcaaccgatccactcacgcaggttcttctagcagcaccccttcttggtctttacttgggtggtgcctgggtggtgaagctcactggccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009566 GO:0009567 GO:0009579 GO:0009657 GO:0009668 GO:0009977 GO:0009987 GO:0010027 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022414 GO:0022804 GO:0022857 GO:0022884 GO:0031224 GO:0031360 GO:0031361 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043235 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055035 GO:0055085 GO:0061024 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0098796 GO:0098797 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

TatC

Protein Analysis

348

Amino Acids

38.23

Weight (kDa)

5.52

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01110
fragaria_vesca	FvH4_4g26390 FvH4_4g26390
malus_domestica	MD13G1032500.v1.1 MD16G1034600.v1.1
prunus_persica	Prupe.1G320000_v2.0.a1
pyrus_communis	pycom16g02940
rosa_chinensis	RchiOBHm_Chr4g0434021
rosa_laevigata	RLG00000006708
rosa_multiflora	Rmu_sc0000352.1_g000022 Rmu_sc0000352.1_g000024
rosa_roxburghii	Rroxscaffold_5G00375430
rosa_rugosa	Rorug04G0272700
rosa_samantha	Rh4AG328400 Rh4BG335700 Rh4CG351200 Rh4DG332100
rosa_wichuraiana	Rw4G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	870
AatII	GACGTC	1 cut(s)	180
Acc36I	ACCTGC	1 cut(s)	964
AccB1I	GGYRCC	2 cut(s)	715, 1016
AccBSI	CCGCTC	1 cut(s)	64
AciI	CCGC	4 cut(s)	64, 127, 191, 246
AclWI	GGATC	1 cut(s)	956
AcoI	YGGCCR	1 cut(s)	1039
AcsI	RAATTY	2 cut(s)	730, 794
AcuI	CTGAAG	1 cut(s)	771
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	3 cut(s)	675, 788, 801
AfiI	CCNNNNNNNGG	2 cut(s)	239, 998
AgsI	TTSAA	6 cut(s)	48, 101, 377, 473, 730, 794
AjnI	CCWGG	5 cut(s)	232, 517, 616, 834, 1019
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
Alw26I	GTCTC	2 cut(s)	124, 624
AlwI	GGATC	1 cut(s)	956
Ama87I	CYCGRG	2 cut(s)	105, 118
AoxI	GGCC	6 cut(s)	70, 230, 260, 562, 650, 1039
ApeKI	GCWGC	9 cut(s)	54, 224, 382, 410, 508, 722, 935, 938, 986
ApoI	RAATTY	2 cut(s)	730, 794
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	3 cut(s)	71, 650, 774
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	1039
AsuII	TTCGAA	1 cut(s)	449
AsuNHI	GCTAGC	1 cut(s)	88
AvaI	CYCGRG	2 cut(s)	105, 118
AvaII	GGWCC	1 cut(s)	774
BanI	GGYRCC	2 cut(s)	715, 1016
BauI	CACGAG	3 cut(s)	10, 59, 803
BbvI	GCAGC	9 cut(s)	66, 211, 369, 422, 520, 734, 925, 947, 998
BccI	CCATC	1 cut(s)	961
BceAI	ACGGC	2 cut(s)	233, 926
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	5 cut(s)	234, 519, 618, 836, 1021
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	2 cut(s)	124, 624
BfaI	CTAG	3 cut(s)	89, 228, 983
BfmI	CTRYAG	1 cut(s)	506
BfuAI	ACCTGC	1 cut(s)	964
BglII	AGATCT	1 cut(s)	454
BmcAI	AGTACT	2 cut(s)	675, 788
Bme1390I	CCNGG	6 cut(s)	234, 341, 519, 618, 836, 1021
Bme18I	GGWCC	1 cut(s)	774
BmeT110I	CYCGRG	2 cut(s)	105, 118
BmgT120I	GGNCC	3 cut(s)	71, 650, 774
BmiI	GGNNCC	6 cut(s)	155, 244, 651, 717, 840, 1018
BmrFI	CCNGG	6 cut(s)	234, 341, 519, 618, 836, 1021
BmsI	GCATC	1 cut(s)	425
BmtI	GCTAGC	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	4 cut(s)	233, 617, 859, 1020
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	840, 870
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 998
Bse1I	ACTGG	3 cut(s)	138, 842, 1042
BseBI	CCWGG	5 cut(s)	234, 519, 618, 836, 1021
BseDI	CCNNGG	4 cut(s)	233, 617, 859, 1020
BseGI	GGATG	2 cut(s)	349, 440
BseLI	CCNNNNNNNGG	2 cut(s)	239, 998
BseNI	ACTGG	3 cut(s)	138, 842, 1042
BseRI	GAGGAG	2 cut(s)	136, 175
BseXI	GCAGC	9 cut(s)	66, 211, 369, 422, 520, 734, 925, 947, 998
BshFI	GGCC	6 cut(s)	72, 232, 262, 564, 652, 1041
BshNI	GGYRCC	2 cut(s)	715, 1016
BsiHKCI	CYCGRG	2 cut(s)	105, 118
BsiSI	CCGG	3 cut(s)	95, 157, 341
BslI	CCNNNNNNNGG	2 cut(s)	239, 998
BsmAI	GTCTC	2 cut(s)	124, 624
BsmBI	CGTCTC	1 cut(s)	624
BsnI	GGCC	6 cut(s)	72, 232, 262, 564, 652, 1041
BsoBI	CYCGRG	2 cut(s)	105, 118
Bsp119I	TTCGAA	1 cut(s)	449
Bsp143I	GATC	5 cut(s)	367, 454, 781, 886, 961
BspACI	CCGC	4 cut(s)	64, 127, 191, 246
BspANI	GGCC	6 cut(s)	72, 232, 262, 564, 652, 1041
BspLI	GGNNCC	6 cut(s)	155, 244, 651, 717, 840, 1018
BspMAI	CTGCAG	1 cut(s)	510
BspMI	ACCTGC	1 cut(s)	964
BspOI	GCTAGC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	956
BspQI	GCTCTTC	1 cut(s)	372
BspT104I	TTCGAA	1 cut(s)	449
BspT107I	GGYRCC	2 cut(s)	715, 1016
BsrBI	CCGCTC	1 cut(s)	64
BsrI	ACTGG	3 cut(s)	138, 842, 1042
BssECI	CCNNGG	4 cut(s)	233, 617, 859, 1020
BssMI	GATC	5 cut(s)	367, 454, 781, 886, 961
BssNI	GRCGYC	1 cut(s)	177
BssSI	CACGAG	3 cut(s)	10, 59, 803
BssT1I	CCWWGG	1 cut(s)	859
Bst2BI	CACGAG	3 cut(s)	10, 59, 803
Bst2UI	CCWGG	5 cut(s)	234, 519, 618, 836, 1021
Bst4CI	ACNGT	1 cut(s)	813
Bst6I	CTCTTC	2 cut(s)	282, 372
BstACI	GRCGYC	1 cut(s)	177
BstBI	TTCGAA	1 cut(s)	449
BstC8I	GCNNGC	3 cut(s)	90, 513, 720
BstDEI	CTNAG	1 cut(s)	571
BstF5I	GGATG	2 cut(s)	349, 440
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	5 cut(s)	370, 457, 784, 889, 964
BstMAI	GTCTC	2 cut(s)	124, 624
BstMBI	GATC	5 cut(s)	367, 454, 781, 886, 961
BstMWI	GCNNNNNNNGC	1 cut(s)	932
BstNI	CCWGG	5 cut(s)	234, 519, 618, 836, 1021
BstSCI	CCNGG	6 cut(s)	232, 339, 517, 616, 834, 1019
BstSFI	CTRYAG	1 cut(s)	506
BstV1I	GCAGC	9 cut(s)	66, 211, 369, 422, 520, 734, 925, 947, 998
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuRI	GGCC	6 cut(s)	72, 232, 262, 564, 652, 1041
BtsCI	GGATG	2 cut(s)	349, 440
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	2 cut(s)	420, 1035
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	3 cut(s)	90, 513, 720
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	3 cut(s)	71, 650, 774
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	3 cut(s)	674, 787, 800
CviQI	GTAC	3 cut(s)	674, 787, 800
DdeI	CTNAG	1 cut(s)	571
DpnI	GATC	5 cut(s)	369, 456, 783, 888, 963
DpnII	GATC	5 cut(s)	367, 454, 781, 886, 961
DraI	TTTAAA	1 cut(s)	543
DrdI	GACNNNNNNGTC	1 cut(s)	870
DseDI	GACNNNNNNGTC	1 cut(s)	870
EaeI	YGGCCR	1 cut(s)	1039
Eam1104I	CTCTTC	2 cut(s)	282, 372
EarI	CTCTTC	2 cut(s)	282, 372
EciI	GGCGGA	2 cut(s)	142, 235
Eco130I	CCWWGG	1 cut(s)	859
Eco147I	AGGCCT	2 cut(s)	232, 262
Eco47I	GGWCC	1 cut(s)	774
Eco57I	CTGAAG	1 cut(s)	771
Eco88I	CYCGRG	2 cut(s)	105, 118
EcoRI	GAATTC	1 cut(s)	794
EcoRII	CCWGG	5 cut(s)	232, 517, 616, 834, 1019
EcoT14I	CCWWGG	1 cut(s)	859
ErhI	CCWWGG	1 cut(s)	859
Esp3I	CGTCTC	1 cut(s)	624
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FbaI	TGATCA	1 cut(s)	367
FokI	GGATG	2 cut(s)	356, 447
FspBI	CTAG	3 cut(s)	89, 228, 983
GlaI	GCGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	6 cut(s)	72, 232, 262, 564, 652, 1041
HapII	CCGG	3 cut(s)	95, 157, 341
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HinfI	GANTC	5 cut(s)	218, 278, 325, 577, 764
HpaI	GTTAAC	1 cut(s)	624
HpaII	CCGG	3 cut(s)	95, 157, 341
HphI	GGTGA	1 cut(s)	1039
Hpy166II	GTNNAC	2 cut(s)	149, 624
Hpy188I	TCNGA	3 cut(s)	80, 324, 390
Hpy188III	TCNNGA	5 cut(s)	329, 374, 470, 552, 882
Hpy8I	GTNNAC	2 cut(s)	149, 624
Hpy99I	CGWCG	3 cut(s)	179, 182, 254
HpyAV	CCTTC	5 cut(s)	287, 575, 746, 841, 1004
HpyCH4III	ACNGT	1 cut(s)	813
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	410, 443, 508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	932
HpyF3I	CTNAG	1 cut(s)	571
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	177
HspAI	GCGC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	367
KspAI	GTTAAC	1 cut(s)	624
Kzo9I	GATC	5 cut(s)	367, 454, 781, 886, 961
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	6 cut(s)	97, 136, 153, 248, 481, 520
Lsp1109I	GCAGC	9 cut(s)	66, 211, 369, 422, 520, 734, 925, 947, 998
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	3 cut(s)	89, 228, 983
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	739
MalI	GATC	5 cut(s)	369, 456, 783, 888, 963
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	5 cut(s)	367, 454, 781, 886, 961
MboII	GAAGA	5 cut(s)	266, 299, 389, 523, 971
MflI	RGATCY	1 cut(s)	454
MluCI	AATT	5 cut(s)	31, 310, 730, 794, 900
MlyI	GAGTC	4 cut(s)	227, 287, 334, 586
MnlI	CCTC	7 cut(s)	114, 117, 153, 156, 162, 283, 900
MseI	TTAA	4 cut(s)	141, 483, 542, 623
MspA1I	CMGCKG	1 cut(s)	938
MspI	CCGG	3 cut(s)	95, 157, 341
MspR9I	CCNGG	6 cut(s)	234, 341, 519, 618, 836, 1021
MvaI	CCWGG	5 cut(s)	234, 519, 618, 836, 1021
MwoI	GCNNNNNNNGC	1 cut(s)	932
NciI	CCSGG	1 cut(s)	341
NdeII	GATC	5 cut(s)	367, 454, 781, 886, 961
NheI	GCTAGC	1 cut(s)	88
NlaIV	GGNNCC	6 cut(s)	155, 244, 651, 717, 840, 1018
NmeAIII	GCCGAG	1 cut(s)	48
NspV	TTCGAA	1 cut(s)	449
PaeR7I	CTCGAG	2 cut(s)	105, 118
PceI	AGGCCT	2 cut(s)	232, 262
PciSI	GCTCTTC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	764
PfoI	TCCNGGA	1 cut(s)	339
PleI	GAGTC	4 cut(s)	226, 286, 333, 585
PpsI	GAGTC	4 cut(s)	226, 286, 333, 585
Psp6I	CCWGG	5 cut(s)	232, 517, 616, 834, 1019
PspGI	CCWGG	5 cut(s)	232, 517, 616, 834, 1019
PspN4I	GGNNCC	6 cut(s)	155, 244, 651, 717, 840, 1018
PspPI	GGNCC	3 cut(s)	71, 650, 774
PspXI	VCTCGAGB	2 cut(s)	105, 118
PstI	CTGCAG	1 cut(s)	510
PsuI	RGATCY	1 cut(s)	454
PvuII	CAGCTG	1 cut(s)	938
RsaI	GTAC	3 cut(s)	675, 788, 801
RsaNI	GTAC	3 cut(s)	674, 787, 800
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	4 cut(s)	141, 483, 542, 623
Sau3AI	GATC	5 cut(s)	367, 454, 781, 886, 961
Sau96I	GGNCC	3 cut(s)	71, 650, 774
ScaI	AGTACT	2 cut(s)	675, 788
SchI	GAGTC	4 cut(s)	227, 287, 334, 586
ScrFI	CCNGG	6 cut(s)	234, 341, 519, 618, 836, 1021
SfaNI	GCATC	1 cut(s)	425
SfcI	CTRYAG	1 cut(s)	506
Sfr274I	CTCGAG	2 cut(s)	105, 118
SfuI	TTCGAA	1 cut(s)	449
SinI	GGWCC	1 cut(s)	774
SlaI	CTCGAG	2 cut(s)	105, 118
SmlI	CTYRAG	2 cut(s)	105, 118
SmoI	CTYRAG	2 cut(s)	105, 118
Sse9I	AATT	5 cut(s)	31, 310, 730, 794, 900
SseBI	AGGCCT	2 cut(s)	232, 262
SsiI	CCGC	4 cut(s)	64, 127, 191, 246
SspMI	CTAG	3 cut(s)	89, 228, 983
StuI	AGGCCT	2 cut(s)	232, 262
StyD4I	CCNGG	6 cut(s)	232, 339, 517, 616, 834, 1019
StyI	CCWWGG	1 cut(s)	859
TaaI	ACNGT	1 cut(s)	813
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	6 cut(s)	106, 119, 252, 281, 302, 449
TasI	AATT	5 cut(s)	31, 310, 730, 794, 900
TatI	WGTACW	2 cut(s)	673, 786
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	764
Tru1I	TTAA	4 cut(s)	141, 483, 542, 623
Tru9I	TTAA	4 cut(s)	141, 483, 542, 623
TscAI	CASTG	2 cut(s)	420, 1042
TseI	GCWGC	9 cut(s)	54, 224, 382, 410, 508, 722, 935, 938, 986
TspDTI	ATGAA	2 cut(s)	31, 609
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	2 cut(s)	420, 1042
VpaK11BI	GGWCC	1 cut(s)	774
XapI	RAATTY	2 cut(s)	730, 794
XhoI	CTCGAG	2 cut(s)	105, 118
XspI	CTAG	3 cut(s)	89, 228, 983
ZraI	GACGTC	1 cut(s)	178
ZrmI	AGTACT	2 cut(s)	675, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.