Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0013511

Physical Location & Seq

Genomic Coordinates Reverse (-)

55513349 .. 55515443

Gene Structure 2095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG332100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTGCAATATAGATGCGGTTGATGAGTCGAAAGAAGAGGAAGGAAGTTCGATTTACAATTTTCTATATCCGAGTCAAGAGCTACTCCCGGATGATAAAGAGATGAGTATATTTGATCATCTTGAAGAGCTGCGTCAGAGAGTATTTGTATCAGTTGCAGCAGTGGGAGTTGCTATGTTGGGATGCTTTGCAGTTTCGAAAGATCTTATAGTGTTTCTTGAAGCTCCTGTTAAAACACAAGGCGTAAAGTTTCTGCAGCTAGCTCCTGGCGAGTTTTTCTTCACTACTTTGAAGGTGTCAGGATATTGTGGCCTTCTCTTAGGGAGTCCAATCATTCTTTATGAAATCATAGCCTTTGTGCTTCCAGGGTTAACGAGAGACGAGAGAAAGTTTCTGGGGCCAATAGTTTTAGGCTCATCAGTACTTTTTTATGCTGGTATCAGCTTCTCCTATTTCGTTTTGGTGCCAGCAGCCTTGAATTTTTTTGTTACTTATGCTGAAGGTGTTGTGGAATCATTGTGGTCCATAGATCAGTACTTTGAATTCGTACTCGTGCTACTGTTCAGCACAGGCTTGTCCTTCCAGGTTCCAGTCATACAAGTTCTCCTTGGACAAGTTGGTCTAGTATCAGGAGATCAAATGCTGTCAATTTGGAGGTATGTTGTGGTTGGTGCTGTTGTGGCAGCTGCCGTGCTTACACCATCAACCGATCCACTCACGCAGGTTCTTCTAGCAGCACCCCTTCTTGGTCTTTACTTGGGTGGTGCCTGGGTGGTGAAGCTCACTGGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009566 GO:0009567 GO:0009579 GO:0009657 GO:0009668 GO:0009977 GO:0009987 GO:0010027 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022414 GO:0022804 GO:0022857 GO:0022884 GO:0031224 GO:0031360 GO:0031361 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043235 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055035 GO:0055085 GO:0061024 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0098796 GO:0098797 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

TatC

Protein Analysis

264

Amino Acids

28.79

Weight (kDa)

4.48

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatC	PF00902	39 - 247	2.8e-67	Sec-independent protein translocase protein (TatC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01110
fragaria_vesca	FvH4_4g26390 FvH4_4g26390
malus_domestica	MD13G1032500.v1.1 MD16G1034600.v1.1
prunus_persica	Prupe.1G320000_v2.0.a1
pyrus_communis	pycom16g02940
rosa_chinensis	RchiOBHm_Chr4g0434021
rosa_laevigata	RLG00000006708
rosa_multiflora	Rmu_sc0000352.1_g000022 Rmu_sc0000352.1_g000024
rosa_roxburghii	Rroxscaffold_5G00375430
rosa_rugosa	Rorug04G0272700
rosa_samantha	Rh4AG328400 Rh4BG335700 Rh4CG351200 Rh4DG332100
rosa_wichuraiana	Rw4G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	618
Acc36I	ACCTGC	1 cut(s)	712
AccB1I	GGYRCC	2 cut(s)	463, 764
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	1 cut(s)	704
AcoI	YGGCCR	1 cut(s)	787
AcsI	RAATTY	2 cut(s)	478, 542
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	3 cut(s)	423, 536, 549
AfiI	CCNNNNNNNGG	1 cut(s)	746
AgsI	TTSAA	5 cut(s)	125, 221, 292, 478, 542
AjnI	CCWGG	4 cut(s)	265, 364, 582, 767
AluBI	AGCT	8 cut(s)	82, 130, 224, 259, 263, 444, 686, 781
AluI	AGCT	8 cut(s)	82, 130, 224, 259, 263, 444, 686, 781
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	1 cut(s)	704
AoxI	GGCC	3 cut(s)	310, 398, 787
ApeKI	GCWGC	7 cut(s)	130, 158, 256, 470, 683, 686, 734
ApoI	RAATTY	2 cut(s)	478, 542
AspS9I	GGNCC	2 cut(s)	398, 522
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	787
AsuII	TTCGAA	1 cut(s)	197
AsuNHI	GCTAGC	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	522
BanI	GGYRCC	2 cut(s)	463, 764
BauI	CACGAG	1 cut(s)	551
BbvI	GCAGC	7 cut(s)	117, 170, 268, 482, 673, 695, 746
BccI	CCATC	1 cut(s)	709
BceAI	ACGGC	1 cut(s)	674
BciT130I	CCWGG	4 cut(s)	267, 366, 584, 769
BclI	TGATCA	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	1 cut(s)	372
BfaI	CTAG	3 cut(s)	260, 623, 731
BfmI	CTRYAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	712
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	7 cut(s)	131, 159, 257, 471, 684, 687, 735
BlsI	GCNGC	7 cut(s)	132, 160, 258, 472, 685, 688, 736
BmcAI	AGTACT	2 cut(s)	423, 536
Bme1390I	CCNGG	5 cut(s)	89, 267, 366, 584, 769
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	2 cut(s)	398, 522
BmiI	GGNNCC	4 cut(s)	399, 465, 588, 766
BmrFI	CCNGG	5 cut(s)	89, 267, 366, 584, 769
BmsI	GCATC	2 cut(s)	4, 173
BmtI	GCTAGC	1 cut(s)	263
Bpu14I	TTCGAA	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	365, 607, 768
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	746
Bse1I	ACTGG	2 cut(s)	590, 790
BseBI	CCWGG	4 cut(s)	267, 366, 584, 769
BseDI	CCNNGG	3 cut(s)	365, 607, 768
BseGI	GGATG	2 cut(s)	97, 188
BseLI	CCNNNNNNNGG	1 cut(s)	746
BseNI	ACTGG	2 cut(s)	590, 790
BseXI	GCAGC	7 cut(s)	117, 170, 268, 482, 673, 695, 746
BshFI	GGCC	3 cut(s)	312, 400, 789
BshNI	GGYRCC	2 cut(s)	463, 764
BsiSI	CCGG	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	746
BsmAI	GTCTC	1 cut(s)	372
BsmBI	CGTCTC	1 cut(s)	372
BsnI	GGCC	3 cut(s)	312, 400, 789
Bsp119I	TTCGAA	1 cut(s)	197
Bsp143I	GATC	5 cut(s)	115, 202, 529, 634, 709
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	3 cut(s)	312, 400, 789
BspLI	GGNNCC	4 cut(s)	399, 465, 588, 766
BspMAI	CTGCAG	1 cut(s)	258
BspMI	ACCTGC	1 cut(s)	712
BspOI	GCTAGC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	704
BspQI	GCTCTTC	1 cut(s)	120
BspT104I	TTCGAA	1 cut(s)	197
BspT107I	GGYRCC	2 cut(s)	463, 764
BsrI	ACTGG	2 cut(s)	590, 790
BssECI	CCNNGG	3 cut(s)	365, 607, 768
BssMI	GATC	5 cut(s)	115, 202, 529, 634, 709
BssSI	CACGAG	1 cut(s)	551
BssT1I	CCWWGG	1 cut(s)	607
Bst2BI	CACGAG	1 cut(s)	551
Bst2UI	CCWGG	4 cut(s)	267, 366, 584, 769
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	2 cut(s)	30, 120
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	261, 468
BstDEI	CTNAG	1 cut(s)	319
BstF5I	GGATG	2 cut(s)	97, 188
BstKTI	GATC	5 cut(s)	118, 205, 532, 637, 712
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	5 cut(s)	115, 202, 529, 634, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	680
BstNI	CCWGG	4 cut(s)	267, 366, 584, 769
BstSCI	CCNGG	5 cut(s)	87, 265, 364, 582, 767
BstSFI	CTRYAG	1 cut(s)	254
BstV1I	GCAGC	7 cut(s)	117, 170, 268, 482, 673, 695, 746
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	3 cut(s)	312, 400, 789
BtsCI	GGATG	2 cut(s)	97, 188
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	168, 783
BveI	ACCTGC	1 cut(s)	712
Cac8I	GCNNGC	2 cut(s)	261, 468
Cfr13I	GGNCC	2 cut(s)	398, 522
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	3 cut(s)	422, 535, 548
CviQI	GTAC	3 cut(s)	422, 535, 548
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	5 cut(s)	117, 204, 531, 636, 711
DpnII	GATC	5 cut(s)	115, 202, 529, 634, 709
DrdI	GACNNNNNNGTC	1 cut(s)	618
DseDI	GACNNNNNNGTC	1 cut(s)	618
EaeI	YGGCCR	1 cut(s)	787
Eam1104I	CTCTTC	2 cut(s)	30, 120
EarI	CTCTTC	2 cut(s)	30, 120
Eco130I	CCWWGG	1 cut(s)	607
Eco47I	GGWCC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	519
EcoRI	GAATTC	1 cut(s)	542
EcoRII	CCWGG	4 cut(s)	265, 364, 582, 767
EcoT14I	CCWWGG	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	607
Esp3I	CGTCTC	1 cut(s)	372
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	7 cut(s)	131, 159, 257, 471, 684, 687, 735
FokI	GGATG	2 cut(s)	104, 195
Fsp4HI	GCNGC	7 cut(s)	131, 159, 257, 471, 684, 687, 735
FspBI	CTAG	3 cut(s)	260, 623, 731
GluI	GCNGC	7 cut(s)	131, 159, 257, 471, 684, 687, 735
HaeIII	GGCC	3 cut(s)	312, 400, 789
HapII	CCGG	1 cut(s)	89
HgaI	GACGC	1 cut(s)	122
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HinfI	GANTC	4 cut(s)	26, 73, 325, 512
HpaI	GTTAAC	1 cut(s)	372
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	787
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	2 cut(s)	72, 138
Hpy188III	TCNNGA	5 cut(s)	77, 122, 218, 300, 630
Hpy8I	GTNNAC	1 cut(s)	372
HpyAV	CCTTC	6 cut(s)	35, 286, 323, 494, 589, 752
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4V	TGCA	4 cut(s)	6, 158, 191, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	680
HpyF3I	CTNAG	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	115
KspAI	GTTAAC	1 cut(s)	372
Kzo9I	GATC	5 cut(s)	115, 202, 529, 634, 709
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	2 cut(s)	229, 268
Lsp1109I	GCAGC	7 cut(s)	117, 170, 268, 482, 673, 695, 746
LweI	GCATC	2 cut(s)	4, 173
MaeI	CTAG	3 cut(s)	260, 623, 731
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	5 cut(s)	117, 204, 531, 636, 711
MboI	GATC	5 cut(s)	115, 202, 529, 634, 709
MboII	GAAGA	4 cut(s)	47, 137, 271, 719
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	4 cut(s)	58, 478, 542, 648
MlyI	GAGTC	3 cut(s)	35, 82, 334
MnlI	CCTC	2 cut(s)	31, 648
MseI	TTAA	2 cut(s)	231, 371
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	5 cut(s)	89, 267, 366, 584, 769
MvaI	CCWGG	4 cut(s)	267, 366, 584, 769
MwoI	GCNNNNNNNGC	1 cut(s)	680
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	5 cut(s)	115, 202, 529, 634, 709
NheI	GCTAGC	1 cut(s)	259
NlaIV	GGNNCC	4 cut(s)	399, 465, 588, 766
NspV	TTCGAA	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	512
PfoI	TCCNGGA	1 cut(s)	87
PkrI	GCNGC	7 cut(s)	132, 160, 258, 472, 685, 688, 736
PleI	GAGTC	3 cut(s)	34, 81, 333
PpsI	GAGTC	3 cut(s)	34, 81, 333
Psp6I	CCWGG	4 cut(s)	265, 364, 582, 767
PspGI	CCWGG	4 cut(s)	265, 364, 582, 767
PspN4I	GGNNCC	4 cut(s)	399, 465, 588, 766
PspPI	GGNCC	2 cut(s)	398, 522
PstI	CTGCAG	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	3 cut(s)	423, 536, 549
RsaNI	GTAC	3 cut(s)	422, 535, 548
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	231, 371
SatI	GCNGC	7 cut(s)	131, 159, 257, 471, 684, 687, 735
Sau3AI	GATC	5 cut(s)	115, 202, 529, 634, 709
Sau96I	GGNCC	2 cut(s)	398, 522
ScaI	AGTACT	2 cut(s)	423, 536
SchI	GAGTC	3 cut(s)	35, 82, 334
ScrFI	CCNGG	5 cut(s)	89, 267, 366, 584, 769
SfaNI	GCATC	2 cut(s)	4, 173
SfcI	CTRYAG	1 cut(s)	254
SfuI	TTCGAA	1 cut(s)	197
SinI	GGWCC	1 cut(s)	522
Sse9I	AATT	4 cut(s)	58, 478, 542, 648
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	3 cut(s)	260, 623, 731
StyD4I	CCNGG	5 cut(s)	87, 265, 364, 582, 767
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	1 cut(s)	561
TaqI	TCGA	3 cut(s)	29, 50, 197
TasI	AATT	4 cut(s)	58, 478, 542, 648
TatI	WGTACW	2 cut(s)	421, 534
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	2 cut(s)	231, 371
Tru9I	TTAA	2 cut(s)	231, 371
TscAI	CASTG	2 cut(s)	168, 790
TseI	GCWGC	7 cut(s)	130, 158, 256, 470, 683, 686, 734
TspDTI	ATGAA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	168, 790
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	2 cut(s)	478, 542
XspI	CTAG	3 cut(s)	260, 623, 731
ZrmI	AGTACT	2 cut(s)	423, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.