Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013511

Physical Location & Seq

Genomic Coordinates Forward (+)

30703576 .. 30706023

Gene Structure 2448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G320000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGAAGCACGAGCTGTGCTTCCATTTCCAACTTGAACTTCATTCGGAGTCGCAGCCACAATTGCTTCCAGCGGCTTGGGCCAATGAGAAACCAGCTGGGTTCTGTTCGAGTCCACCATTCGAGGAGGCCAAGACTGGAGCTCAATGGTTTGCGGAGCCGGAAGAGCTTACGAAACGACGTAGTCTGCTTCGCTGTTGATGACGATTTGAGAGAGAAGCAGCAAGAGTTTGGCGCTGGGTCTGGGATTGGCTCCGCCGTCGAGGATAGGCCTGCTACTGATGTGGTTGATGGCTCAAAAGAAGAGAATGGAAGTGCTGTTTACAATTTTCTATATCCTAGTCAAGAGCTCCTCCCGGACGATAAAGAGATGAGTATATTTGATCATCTGGAAGAGCTGCGTCAGAGAATTTTTATATCAGTTCTAGCAGTTGGAGTGTCTATGTTGGGATGCTTTGCATATTCAAAGGAACTTATAATATTTCTCGAAGCTCCTGTTAAAGACCAAGGTGTAAAATTCCTGCAGCTAGCTCCTGGCGAGTTTTTCTTTACTACCTTAAAGGTATCAGGATATTGTGGCCTTCTCTTGGGGAGCCCCATCATTCTGTATGAGCTTATAGCCTTTGTTCTTCCAGGATTAACAAGAGAAGAGCGAAAATTTCTGGGGCCAATTGTTTTGGGCTCATCAGTACTTTTCTACGCTGGTATCAGCTTCTCCTATTTTGTTTTGACACCAGCAGCCTTGAATTTTTTTGTTACATATGCGGAAGGTGTTGTGGAATCGTTGTGGTCAATTGATCAATACTTTGAGTTTGTACTTGTGCTCATGTTCAGCACAGGCTTGTCTTTCCAGGTTCCGGTTATACAATTTCTCCTGGGACAAGTTGGTCTAGTATCAGGAGATCAAATGCTGTCAATTTGGAGGTATGTTGTGGTTGGTGCTGTTGTGGCAGCTGCTGTGGTTACACCGTCAACCGATCCACTCACTCAGGTTCTTCTAGCAGCACCCCTCCTTGGTCTTTACTTTGGGGGTGCCTGGGTTGTTAAGCTTACTGGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009566 GO:0009567 GO:0009579 GO:0009657 GO:0009668 GO:0009977 GO:0009987 GO:0010027 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022414 GO:0022804 GO:0022857 GO:0022884 GO:0031224 GO:0031360 GO:0031361 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043235 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055035 GO:0055085 GO:0061024 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0098796 GO:0098797 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

TatC

Protein Analysis

354

Amino Acids

38.87

Weight (kDa)

5.68

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01110
fragaria_vesca	FvH4_4g26390 FvH4_4g26390
malus_domestica	MD13G1032500.v1.1 MD16G1034600.v1.1
prunus_persica	Prupe.1G320000_v2.0.a1
pyrus_communis	pycom16g02940
rosa_chinensis	RchiOBHm_Chr4g0434021
rosa_laevigata	RLG00000006708
rosa_multiflora	Rmu_sc0000352.1_g000022 Rmu_sc0000352.1_g000024
rosa_roxburghii	Rroxscaffold_5G00375430
rosa_rugosa	Rorug04G0272700
rosa_samantha	Rh4AG328400 Rh4BG335700 Rh4CG351200 Rh4DG332100
rosa_wichuraiana	Rw4G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AasI	GACNNNNNNGTC	1 cut(s)	885
AccB1I	GGYRCC	1 cut(s)	1031
AciI	CCGC	4 cut(s)	73, 154, 255, 764
AclWI	GGATC	1 cut(s)	971
AcoI	YGGCCR	1 cut(s)	1054
AcsI	RAATTY	4 cut(s)	408, 515, 656, 745
AfaI	GTAC	2 cut(s)	690, 816
AfiI	CCNNNNNNNGG	3 cut(s)	586, 856, 1013
AgsI	TTSAA	3 cut(s)	37, 465, 745
AjnI	CCWGG	5 cut(s)	532, 631, 849, 873, 1034
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
Alw21I	GWGCWC	3 cut(s)	144, 351, 825
AlwI	GGATC	1 cut(s)	971
AlwNI	CAGNNNCTG	1 cut(s)	956
AoxI	GGCC	6 cut(s)	80, 128, 269, 577, 665, 1054
ApeKI	GCWGC	8 cut(s)	54, 220, 397, 523, 737, 950, 953, 1001
ApoI	RAATTY	4 cut(s)	408, 515, 656, 745
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	80, 665
AsuC2I	CCSGG	1 cut(s)	356
AsuNHI	GCTAGC	1 cut(s)	526
BaeI	ACNNNNGTAYC	2 cut(s)	688, 721
BanI	GGYRCC	1 cut(s)	1031
BanII	GRGCYC	4 cut(s)	144, 351, 596, 683
BauI	CACGAG	1 cut(s)	10
Bbv12I	GWGCWC	3 cut(s)	144, 351, 825
BbvI	GCAGC	8 cut(s)	66, 232, 384, 535, 749, 940, 962, 1013
BccI	CCATC	2 cut(s)	284, 605
BceAI	ACGGC	1 cut(s)	242
BciT130I	CCWGG	5 cut(s)	534, 633, 851, 875, 1036
BclI	TGATCA	2 cut(s)	382, 796
BcnI	CCSGG	1 cut(s)	356
BfaI	CTAG	5 cut(s)	339, 425, 527, 890, 998
BfmI	CTRYAG	1 cut(s)	521
BfoI	RGCGCY	1 cut(s)	237
BisI	GCNGC	9 cut(s)	55, 74, 221, 398, 524, 738, 951, 954, 1002
BlsI	GCNGC	9 cut(s)	56, 75, 222, 399, 525, 739, 952, 955, 1003
BmcAI	AGTACT	1 cut(s)	690
Bme1390I	CCNGG	6 cut(s)	356, 534, 633, 851, 875, 1036
BmgT120I	GGNCC	2 cut(s)	80, 665
BmiI	GGNNCC	6 cut(s)	158, 253, 593, 666, 855, 1033
BmrFI	CCNGG	6 cut(s)	356, 534, 633, 851, 875, 1036
BmsI	GCATC	1 cut(s)	440
BmtI	GCTAGC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	356
BsaJI	CCNNGG	4 cut(s)	505, 874, 1012, 1035
BsaWI	WCCGGW	1 cut(s)	856
BsaXI	ACNNNNNCTCC	2 cut(s)	855, 885
Bsc4I	CCNNNNNNNGG	3 cut(s)	586, 856, 1013
Bse1I	ACTGG	2 cut(s)	141, 1057
BseBI	CCWGG	5 cut(s)	534, 633, 851, 875, 1036
BseDI	CCNNGG	4 cut(s)	505, 874, 1012, 1035
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	3 cut(s)	586, 856, 1013
BseMII	CTCAG	1 cut(s)	1001
BseNI	ACTGG	2 cut(s)	141, 1057
BseRI	GAGGAG	2 cut(s)	139, 341
BseXI	GCAGC	8 cut(s)	66, 232, 384, 535, 749, 940, 962, 1013
BseYI	CCCAGC	2 cut(s)	97, 236
BshFI	GGCC	6 cut(s)	82, 130, 271, 579, 667, 1056
BshNI	GGYRCC	1 cut(s)	1031
BsiHKAI	GWGCWC	3 cut(s)	144, 351, 825
BsiSI	CCGG	3 cut(s)	160, 356, 857
BslFI	GGGAC	1 cut(s)	891
BslI	CCNNNNNNNGG	3 cut(s)	586, 856, 1013
BsmFI	GGGAC	1 cut(s)	891
BsnI	GGCC	6 cut(s)	82, 130, 271, 579, 667, 1056
Bsp1286I	GDGCHC	5 cut(s)	144, 351, 596, 683, 825
Bsp143I	GATC	4 cut(s)	382, 796, 901, 976
BspACI	CCGC	4 cut(s)	73, 154, 255, 764
BspANI	GGCC	6 cut(s)	82, 130, 271, 579, 667, 1056
BspCNI	CTCAG	1 cut(s)	1000
BspLI	GGNNCC	6 cut(s)	158, 253, 593, 666, 855, 1033
BspMAI	CTGCAG	1 cut(s)	525
BspOI	GCTAGC	1 cut(s)	530
BspPI	GGATC	1 cut(s)	971
BspQI	GCTCTTC	3 cut(s)	158, 387, 642
BspT107I	GGYRCC	1 cut(s)	1031
BsrI	ACTGG	2 cut(s)	141, 1057
BssECI	CCNNGG	4 cut(s)	505, 874, 1012, 1035
BssMI	GATC	4 cut(s)	382, 796, 901, 976
BssSI	CACGAG	1 cut(s)	10
BssT1I	CCWWGG	2 cut(s)	505, 1012
Bst2BI	CACGAG	1 cut(s)	10
Bst2UI	CCWGG	5 cut(s)	534, 633, 851, 875, 1036
Bst4CI	ACNGT	1 cut(s)	969
Bst6I	CTCTTC	4 cut(s)	158, 297, 387, 642
BstC8I	GCNNGC	2 cut(s)	273, 528
BstDEI	CTNAG	1 cut(s)	987
BstF5I	GGATG	1 cut(s)	455
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	4 cut(s)	385, 799, 904, 979
BstMBI	GATC	4 cut(s)	382, 796, 901, 976
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 79, 165, 947
BstNI	CCWGG	5 cut(s)	534, 633, 851, 875, 1036
BstSCI	CCNGG	6 cut(s)	354, 532, 631, 849, 873, 1034
BstSFI	CTRYAG	1 cut(s)	521
BstV1I	GCAGC	8 cut(s)	66, 232, 384, 535, 749, 940, 962, 1013
BstXI	CCANNNNNNTGG	1 cut(s)	77
BsuRI	GGCC	6 cut(s)	82, 130, 271, 579, 667, 1056
BtsCI	GGATG	1 cut(s)	455
Cac8I	GCNNGC	2 cut(s)	273, 528
CaiI	CAGNNNCTG	1 cut(s)	956
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	80, 665
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	2 cut(s)	689, 815
CviAII	CATG	1 cut(s)	826
CviQI	GTAC	2 cut(s)	689, 815
DdeI	CTNAG	1 cut(s)	987
DpnI	GATC	4 cut(s)	384, 798, 903, 978
DpnII	GATC	4 cut(s)	382, 796, 901, 976
DrdI	GACNNNNNNGTC	1 cut(s)	885
DseDI	GACNNNNNNGTC	1 cut(s)	885
EaeI	YGGCCR	1 cut(s)	1054
Eam1104I	CTCTTC	4 cut(s)	158, 297, 387, 642
EarI	CTCTTC	4 cut(s)	158, 297, 387, 642
EciI	GGCGGA	1 cut(s)	244
Ecl136II	GAGCTC	2 cut(s)	142, 349
Eco130I	CCWWGG	2 cut(s)	505, 1012
Eco147I	AGGCCT	1 cut(s)	271
Eco24I	GRGCYC	4 cut(s)	144, 351, 596, 683
Eco53kI	GAGCTC	2 cut(s)	142, 349
EcoICRI	GAGCTC	2 cut(s)	142, 349
EcoRII	CCWGG	5 cut(s)	532, 631, 849, 873, 1034
EcoT14I	CCWWGG	2 cut(s)	505, 1012
EcoT38I	GRGCYC	4 cut(s)	144, 351, 596, 683
ErhI	CCWWGG	2 cut(s)	505, 1012
FaeI	CATG	1 cut(s)	829
FaqI	GGGAC	1 cut(s)	891
FatI	CATG	1 cut(s)	825
FauNDI	CATATG	1 cut(s)	760
FbaI	TGATCA	2 cut(s)	382, 796
Fnu4HI	GCNGC	9 cut(s)	55, 74, 221, 398, 524, 738, 951, 954, 1002
FokI	GGATG	1 cut(s)	462
FriOI	GRGCYC	4 cut(s)	144, 351, 596, 683
Fsp4HI	GCNGC	9 cut(s)	55, 74, 221, 398, 524, 738, 951, 954, 1002
FspBI	CTAG	5 cut(s)	339, 425, 527, 890, 998
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	9 cut(s)	55, 74, 221, 398, 524, 738, 951, 954, 1002
GsaI	CCCAGC	2 cut(s)	101, 240
GsuI	CTGGAG	1 cut(s)	158
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	6 cut(s)	82, 130, 271, 579, 667, 1056
HapII	CCGG	3 cut(s)	160, 356, 857
HgaI	GACGC	1 cut(s)	389
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	1 cut(s)	829
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HincII	GTYRAC	1 cut(s)	972
HindII	GTYRAC	1 cut(s)	972
HindIII	AAGCTT	1 cut(s)	1046
HinfI	GANTC	3 cut(s)	49, 111, 779
HpaII	CCGG	3 cut(s)	160, 356, 857
Hpy166II	GTNNAC	3 cut(s)	115, 322, 972
Hpy188I	TCNGA	2 cut(s)	48, 405
Hpy188III	TCNNGA	5 cut(s)	344, 389, 485, 567, 897
Hpy8I	GTNNAC	3 cut(s)	115, 322, 972
Hpy99I	CGWCG	2 cut(s)	182, 263
HpyAV	CCTTC	2 cut(s)	590, 761
HpyCH4III	ACNGT	1 cut(s)	969
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	458, 523
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 79, 165, 947
HpyF3I	CTNAG	1 cut(s)	987
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	829
HspAI	GCGC	1 cut(s)	234
Ksp22I	TGATCA	2 cut(s)	382, 796
Kzo9I	GATC	4 cut(s)	382, 796, 901, 976
LguI	GCTCTTC	3 cut(s)	158, 387, 642
LmnI	GCTCC	7 cut(s)	139, 156, 257, 354, 496, 535, 591
Lsp1109I	GCAGC	8 cut(s)	66, 232, 384, 535, 749, 940, 962, 1013
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	5 cut(s)	339, 425, 527, 890, 998
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	754, 961
MalI	GATC	4 cut(s)	384, 798, 903, 978
MboI	GATC	4 cut(s)	382, 796, 901, 976
MboII	GAAGA	6 cut(s)	175, 314, 404, 620, 659, 986
MfeI	CAATTG	3 cut(s)	61, 669, 792
MhlI	GDGCHC	5 cut(s)	144, 351, 596, 683, 825
MlyI	GAGTC	2 cut(s)	58, 120
MmeI	TCCRAC	2 cut(s)	54, 412
MnlI	CCTC	6 cut(s)	117, 120, 256, 362, 915, 1019
MseI	TTAA	4 cut(s)	498, 557, 638, 1044
MspA1I	CMGCKG	3 cut(s)	73, 97, 953
MspI	CCGG	3 cut(s)	160, 356, 857
MspR9I	CCNGG	6 cut(s)	356, 534, 633, 851, 875, 1036
MunI	CAATTG	3 cut(s)	61, 669, 792
MvaI	CCWGG	5 cut(s)	534, 633, 851, 875, 1036
MwoI	GCNNNNNNNGC	4 cut(s)	63, 79, 165, 947
NciI	CCSGG	1 cut(s)	356
NdeI	CATATG	1 cut(s)	760
NdeII	GATC	4 cut(s)	382, 796, 901, 976
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	1 cut(s)	829
NlaIV	GGNNCC	6 cut(s)	158, 253, 593, 666, 855, 1033
PceI	AGGCCT	1 cut(s)	271
PciSI	GCTCTTC	3 cut(s)	158, 387, 642
PfeI	GAWTC	1 cut(s)	779
PflFI	GACNNNGTC	1 cut(s)	182
PfoI	TCCNGGA	2 cut(s)	354, 631
PkrI	GCNGC	9 cut(s)	56, 75, 222, 399, 525, 739, 952, 955, 1003
PleI	GAGTC	2 cut(s)	57, 119
PpsI	GAGTC	2 cut(s)	57, 119
PsiI	TTATAA	1 cut(s)	476
Psp124BI	GAGCTC	2 cut(s)	144, 351
Psp6I	CCWGG	5 cut(s)	532, 631, 849, 873, 1034
PspFI	CCCAGC	2 cut(s)	97, 236
PspGI	CCWGG	5 cut(s)	532, 631, 849, 873, 1034
PspN4I	GGNNCC	6 cut(s)	158, 253, 593, 666, 855, 1033
PspPI	GGNCC	2 cut(s)	80, 665
PstI	CTGCAG	1 cut(s)	525
PstNI	CAGNNNCTG	1 cut(s)	956
PsyI	GACNNNGTC	1 cut(s)	182
PvuII	CAGCTG	2 cut(s)	97, 953
RsaI	GTAC	2 cut(s)	690, 816
RsaNI	GTAC	2 cut(s)	689, 815
SacI	GAGCTC	2 cut(s)	144, 351
SapI	GCTCTTC	3 cut(s)	158, 387, 642
SaqAI	TTAA	4 cut(s)	498, 557, 638, 1044
SatI	GCNGC	9 cut(s)	55, 74, 221, 398, 524, 738, 951, 954, 1002
Sau3AI	GATC	4 cut(s)	382, 796, 901, 976
Sau96I	GGNCC	2 cut(s)	80, 665
ScaI	AGTACT	1 cut(s)	690
SchI	GAGTC	2 cut(s)	58, 120
ScrFI	CCNGG	6 cut(s)	356, 534, 633, 851, 875, 1036
SduI	GDGCHC	5 cut(s)	144, 351, 596, 683, 825
SfaNI	GCATC	1 cut(s)	440
SfcI	CTRYAG	1 cut(s)	521
SseBI	AGGCCT	1 cut(s)	271
SsiI	CCGC	4 cut(s)	73, 154, 255, 764
SspI	AATATT	1 cut(s)	480
SspMI	CTAG	5 cut(s)	339, 425, 527, 890, 998
SstI	GAGCTC	2 cut(s)	144, 351
StuI	AGGCCT	1 cut(s)	271
StyD4I	CCNGG	6 cut(s)	354, 532, 631, 849, 873, 1034
StyI	CCWWGG	2 cut(s)	505, 1012
TaaI	ACNGT	1 cut(s)	969
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	4 cut(s)	109, 122, 261, 486
TatI	WGTACW	2 cut(s)	688, 814
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	779
Tru1I	TTAA	4 cut(s)	498, 557, 638, 1044
Tru9I	TTAA	4 cut(s)	498, 557, 638, 1044
TseI	GCWGC	8 cut(s)	54, 220, 397, 523, 737, 950, 953, 1001
TspDTI	ATGAA	1 cut(s)	31
Tth111I	GACNNNGTC	1 cut(s)	182
XapI	RAATTY	4 cut(s)	408, 515, 656, 745
XspI	CTAG	5 cut(s)	339, 425, 527, 890, 998
ZrmI	AGTACT	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.