AT2G01410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016107
Physical Location & Seq
Reverse (-)
175040 .. 176407
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01410.1

Sequence Viewer

Length: 1164 bp
ATGAAAGCGAACATGTCGTCGTCGTCTTCCACTCGATACAGATCCTTCTTCGTCTTCCCAATTCTCTTCGCCGTCTTGTTCCTGGGACTTCTGATTCCCTCCTCCGCCGATAACCGCCACGTTATCAACTTCCGATCGCCGGGACTCTACCCGGAGGGACTAACCTGGGATCCAAGGGACCAGCATTTTCTAGTCGGTTCTCTCCACAGCCGCACAATTCATTCCGTCTCCGACGCTGGAGTCATCGAAACCCTAATCTCCGATCTCGATCTACCGGAGAACTCCACTATCCTCGGTCTCGCCGTTGACTCTACTAATCGCCGTCTCCTTGCCTGTATCCAGAGTTTGCCGCCTCTCCCTCCCTTCAGTGCCCTAGCCTCCTACGATCTCCGCAGCGGAGGCCGTCGTGTATTCCTCTCTCCTCTCCCGTCTCTTCCCGGAGACGACGAAGACATCGCTCGTGATGTCGCCAATGACGTGGCGGTTGATTTCAAAGGCAACGCTTACGTCACCAACTCAGCCAAAAACTTCATCTGGAAAGTCGATCGCGACGGCGCAGCTTCGATCTTCTCCAAATCGCCGTTGTTCAATTCGCAGCCTGTGGCGGCAGACGCGGACGCAAGTTTCCGCGATTGCGGCTTGAACGGGATCGTGTACATCAGCAAAGGCTATCTCCTGGTGGTGCAGAGCAACACAGGGAAGGTATTCAAAGTTGACGAAGATAGCGGGAATGCGAGGCTGGTGTTGTTAAACGGTGATCTGATTGCGGCGGACGGGATGACGAGGAGACGGAGAGACGGCACAGTCATGGTGGTGTCACAGAAGAAGCTTTGGTTACTCAAAAGCCAAGATAGCTGGAGCGAAGGAGTTGTTTACGACGAAATTGACCTCGACATCGAGGGCTTTCCGACCGCGGTGACGGTTGCGGGACGGGATAGGATATATGTGTTGTATGGGAGAGTGATGGAGGGGATAATGGGAAGTAGTTACAAAGAAGAAGGAGCGAGGGAATGGTTTGGTATAGAAGAGGTTTGGTCGGAGAAGGAAGGTGGTGAAGATAAGATTTGGTTGTATGTGTTGATTGGATTTGGCTTCGCTTACTTCTGTTTCTGGAGATTTCAGATGAAGAAGCTCATCACAAACATGGACAAGAAGATCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SGL

Protein Analysis

387

Amino Acids

43.02

Weight (kDa)

5.42

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01410
fragaria_vesca FvH4_4g32390
malus_domestica MD16G1028500.v1.1
prunus_persica Prupe.1G324200_v2.0.a1
pyrus_communis pycom16g02440
rosa_laevigata RLG00000006110
rosa_multiflora Rmu_co8419081.1_g000001
rosa_roxburghii Rroxscaffold_5G00382130
rosa_rugosa Rorug04G0331600 Rorug07G0286600
rosa_samantha Rh4AG383400 Rh4BG397500 Rh4CG412700 Rh4DG390200
rosa_wichuraiana Rw4G033080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 239, 803
AccII CGCG 4 cut(s) 549, 614, 630, 914
AclWI GGATC 4 cut(s) 36, 164, 177, 656
AcuI CTGAAG 1 cut(s) 349
AfaI GTAC 1 cut(s) 656
AfiI CCNNNNNNNGG 1 cut(s) 139
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 4 cut(s) 493, 589, 643, 709
AjiI CACGTC 1 cut(s) 478
AjnI CCWGG 3 cut(s) 81, 164, 675
AluBI AGCT 4 cut(s) 560, 829, 855, 1132
AluI AGCT 4 cut(s) 560, 829, 855, 1132
Alw26I GTCTC 7 cut(s) 232, 302, 329, 435, 435, 781, 789
AlwI GGATC 4 cut(s) 36, 164, 177, 656
AoxI GGCC 1 cut(s) 400
ApeKI GCWGC 3 cut(s) 393, 557, 595
ArsI GACNNNNNNTTYG 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 704
AspLEI GCGC 1 cut(s) 557
AspS9I GGNCC 1 cut(s) 178
AsuC2I CCSGG 3 cut(s) 141, 152, 438
AsuHPI GGTGA 4 cut(s) 502, 767, 928, 1064
AvaII GGWCC 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 373
BamHI GGATCC 1 cut(s) 169
BauI CACGAG 1 cut(s) 459
BbsI GAAGAC 3 cut(s) 18, 46, 456
BbvI GCAGC 3 cut(s) 405, 569, 607
BccI CCATC 1 cut(s) 958
BceAI ACGGC 7 cut(s) 56, 287, 306, 387, 565, 568, 814
BciT130I CCWGG 3 cut(s) 83, 166, 677
BciVI GTATCC 1 cut(s) 347
BcnI CCSGG 3 cut(s) 141, 152, 438
BcoDI GTCTC 7 cut(s) 232, 302, 329, 435, 435, 781, 789
BfaI CTAG 2 cut(s) 191, 374
BfuI GTATCC 1 cut(s) 347
BisI GCNGC 8 cut(s) 211, 350, 394, 558, 596, 606, 637, 768
BlsI GCNGC 8 cut(s) 212, 351, 395, 559, 597, 607, 638, 769
Bme1390I CCNGG 6 cut(s) 83, 141, 152, 166, 438, 677
Bme18I GGWCC 1 cut(s) 178
BmgBI CACGTC 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 2 cut(s) 171, 179
BmrFI CCNGG 6 cut(s) 83, 141, 152, 166, 438, 677
BpiI GAAGAC 3 cut(s) 18, 46, 456
BpmI CTGGAG 3 cut(s) 258, 877, 1132
BpuMI CCSGG 3 cut(s) 141, 152, 438
BsaBI GATNNNNATC 2 cut(s) 40, 267
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 5 cut(s) 82, 165, 173, 292, 912
BsaWI WCCGGW 1 cut(s) 274
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse8I GATNNNNATC 2 cut(s) 40, 267
BseBI CCWGG 3 cut(s) 83, 166, 677
BseDI CCNNGG 5 cut(s) 82, 165, 173, 292, 912
BseGI GGATG 1 cut(s) 783
BseJI GATNNNNATC 2 cut(s) 40, 267
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 531
BseRI GAGGAG 3 cut(s) 91, 411, 799
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 3 cut(s) 405, 569, 607
BsgI GTGCAG 1 cut(s) 704
Bsh1236I CGCG 4 cut(s) 549, 614, 630, 914
Bsh1285I CGRYCG 3 cut(s) 137, 547, 912
BshFI GGCC 1 cut(s) 402
BsiEI CGRYCG 3 cut(s) 137, 547, 912
BsiSI CCGG 4 cut(s) 140, 152, 275, 438
BslFI GGGAC 5 cut(s) 99, 156, 171, 191, 942
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 7 cut(s) 232, 302, 329, 435, 435, 781, 789
BsmBI CGTCTC 6 cut(s) 232, 329, 435, 435, 781, 789
BsmFI GGGAC 5 cut(s) 99, 156, 171, 191, 942
BsmI GAATGC 1 cut(s) 736
BsnI GGCC 1 cut(s) 402
Bso31I GGTCTC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 373
Bsp1407I TGTACA 1 cut(s) 654
Bsp68I TCGCGA 1 cut(s) 549
BspANI GGCC 1 cut(s) 402
BspCNI CTCAG 1 cut(s) 530
BspFNI CGCG 4 cut(s) 549, 614, 630, 914
BspLI GGNNCC 2 cut(s) 171, 179
BspPI GGATC 4 cut(s) 36, 164, 177, 656
BspTNI GGTCTC 1 cut(s) 302
BsrGI TGTACA 1 cut(s) 654
BssECI CCNNGG 5 cut(s) 82, 165, 173, 292, 912
BssSI CACGAG 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 459
Bst2UI CCWGG 3 cut(s) 83, 166, 677
Bst4CI ACNGT 3 cut(s) 755, 805, 922
Bst6I CTCTTC 3 cut(s) 71, 438, 1020
BstAUI TGTACA 1 cut(s) 654
BstDEI CTNAG 2 cut(s) 517, 1161
BstDSI CCRYGG 1 cut(s) 912
BstF5I GGATG 1 cut(s) 783
BstFNI CGCG 4 cut(s) 549, 614, 630, 914
BstHHI GCGC 1 cut(s) 557
BstMAI GTCTC 7 cut(s) 232, 302, 329, 435, 435, 781, 789
BstMCI CGRYCG 3 cut(s) 137, 547, 912
BstMWI GCNNNNNNNGC 4 cut(s) 399, 611, 636, 852
BstNI CCWGG 3 cut(s) 83, 166, 677
BstNSI RCATGY 1 cut(s) 16
BstSCI CCNGG 6 cut(s) 81, 139, 150, 164, 436, 675
BstSLI GKGCMC 1 cut(s) 373
BstUI CGCG 4 cut(s) 549, 614, 630, 914
BstV1I GCAGC 3 cut(s) 405, 569, 607
BstV2I GAAGAC 3 cut(s) 18, 46, 456
BstX2I RGATCY 2 cut(s) 41, 169
BstXI CCANNNNNNTGG 1 cut(s) 478
BstYI RGATCY 2 cut(s) 41, 169
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 1 cut(s) 402
BtgI CCRYGG 1 cut(s) 912
BtgZI GCGATG 1 cut(s) 439
BtrI CACGTC 1 cut(s) 478
BtsCI GGATG 1 cut(s) 783
BtsIMutI CAGTG 1 cut(s) 373
BtuMI TCGCGA 1 cut(s) 549
CfoI GCGC 1 cut(s) 557
Cfr13I GGNCC 1 cut(s) 178
Cfr42I CCGCGG 1 cut(s) 915
CseI GACGC 3 cut(s) 242, 620, 626
Csp6I GTAC 1 cut(s) 655
CviAII CATG 3 cut(s) 13, 808, 1144
CviQI GTAC 1 cut(s) 655
DdeI CTNAG 2 cut(s) 517, 1161
DrdI GACNNNNNNGTC 2 cut(s) 239, 803
DseDI GACNNNNNNGTC 2 cut(s) 239, 803
Eam1104I CTCTTC 3 cut(s) 71, 438, 1020
EarI CTCTTC 3 cut(s) 71, 438, 1020
EciI GGCGGA 2 cut(s) 94, 785
Eco130I CCWWGG 1 cut(s) 173
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 349
EcoRII CCWGG 3 cut(s) 81, 164, 675
EcoT14I CCWWGG 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 173
Esp3I CGTCTC 6 cut(s) 232, 329, 435, 435, 781, 789
FaeI CATG 3 cut(s) 16, 811, 1147
FaiI YATR 8 cut(s) 14, 809, 943, 945, 954, 1022, 1074, 1145
FaqI GGGAC 5 cut(s) 99, 156, 171, 191, 942
FatI CATG 3 cut(s) 12, 807, 1143
FauI CCCGC 2 cut(s) 719, 919
Fnu4HI GCNGC 8 cut(s) 211, 350, 394, 558, 596, 606, 637, 768
FokI GGATG 1 cut(s) 790
Fsp4HI GCNGC 8 cut(s) 211, 350, 394, 558, 596, 606, 637, 768
FspBI CTAG 2 cut(s) 191, 374
GlaI GCGC 1 cut(s) 556
GluI GCNGC 8 cut(s) 211, 350, 394, 558, 596, 606, 637, 768
GsuI CTGGAG 3 cut(s) 258, 877, 1132
HaeIII GGCC 1 cut(s) 402
HapII CCGG 4 cut(s) 140, 152, 275, 438
HgaI GACGC 3 cut(s) 242, 620, 626
HhaI GCGC 1 cut(s) 557
Hin1II CATG 3 cut(s) 16, 811, 1147
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HincII GTYRAC 2 cut(s) 307, 715
HindII GTYRAC 2 cut(s) 307, 715
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 4 cut(s) 94, 144, 240, 308
HpaII CCGG 4 cut(s) 140, 152, 275, 438
HphI GGTGA 4 cut(s) 502, 767, 928, 1064
Hpy166II GTNNAC 4 cut(s) 307, 655, 715, 874
Hpy188I TCNGA 8 cut(s) 93, 134, 232, 262, 762, 909, 1039, 1122
Hpy188III TCNNGA 6 cut(s) 266, 340, 461, 535, 548, 1111
Hpy8I GTNNAC 4 cut(s) 307, 655, 715, 874
Hpy99I CGWCG 7 cut(s) 22, 25, 236, 408, 449, 554, 881
HpyAV CCTTC 7 cut(s) 55, 373, 694, 857, 992, 1036, 1040
HpyCH4III ACNGT 3 cut(s) 755, 805, 922
HpyCH4IV ACGT 3 cut(s) 120, 477, 507
HpyCH4V TGCA 1 cut(s) 685
HpyF10VI GCNNNNNNNGC 4 cut(s) 399, 611, 636, 852
HpyF3I CTNAG 2 cut(s) 517, 1161
HpySE526I ACGT 3 cut(s) 120, 477, 507
Hsp92II CATG 3 cut(s) 16, 811, 1147
HspAI GCGC 1 cut(s) 555
KspI CCGCGG 1 cut(s) 915
LmnI GCTCC 2 cut(s) 858, 1001
Lsp1109I GCAGC 3 cut(s) 405, 569, 607
MaeI CTAG 2 cut(s) 191, 374
MaeII ACGT 3 cut(s) 120, 477, 507
MaeIII GTNAC 5 cut(s) 508, 816, 834, 916, 986
MflI RGATCY 2 cut(s) 41, 169
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 4 cut(s) 60, 216, 589, 882
MlyI GAGTC 3 cut(s) 138, 249, 302
MmeI TCCRAC 3 cut(s) 255, 932, 1017
MroXI GAANNNNTTC 1 cut(s) 704
MseI TTAA 1 cut(s) 749
MslI CAYNNNNRTG 3 cut(s) 806, 812, 1142
MspA1I CMGCKG 2 cut(s) 396, 914
MspI CCGG 4 cut(s) 140, 152, 275, 438
MspR9I CCNGG 6 cut(s) 83, 141, 152, 166, 438, 677
Mva1269I GAATGC 1 cut(s) 736
MvaI CCWGG 3 cut(s) 83, 166, 677
MvnI CGCG 4 cut(s) 549, 614, 630, 914
MwoI GCNNNNNNNGC 4 cut(s) 399, 611, 636, 852
NciI CCSGG 3 cut(s) 141, 152, 438
NlaIII CATG 3 cut(s) 16, 811, 1147
NlaIV GGNNCC 2 cut(s) 171, 179
NmuCI GTSAC 3 cut(s) 508, 816, 916
NruI TCGCGA 1 cut(s) 549
NspI RCATGY 1 cut(s) 16
PciI ACATGT 1 cut(s) 12
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 474
PctI GAATGC 1 cut(s) 736
PdmI GAANNNNTTC 1 cut(s) 704
PfeI GAWTC 1 cut(s) 94
PfoI TCCNGGA 1 cut(s) 436
PkrI GCNGC 8 cut(s) 212, 351, 395, 559, 597, 607, 638, 769
Ple19I CGATCG 2 cut(s) 137, 547
PleI GAGTC 3 cut(s) 138, 248, 302
PpsI GAGTC 3 cut(s) 138, 248, 302
PscI ACATGT 1 cut(s) 12
Psp6I CCWGG 3 cut(s) 81, 164, 675
PspGI CCWGG 3 cut(s) 81, 164, 675
PspN4I GGNNCC 2 cut(s) 171, 179
PspPI GGNCC 1 cut(s) 178
PsuI RGATCY 2 cut(s) 41, 169
PvuI CGATCG 2 cut(s) 137, 547
RruI TCGCGA 1 cut(s) 549
RsaI GTAC 1 cut(s) 656
RsaNI GTAC 1 cut(s) 655
RseI CAYNNNNRTG 3 cut(s) 806, 812, 1142
SacII CCGCGG 1 cut(s) 915
SaqAI TTAA 1 cut(s) 749
SatI GCNGC 8 cut(s) 211, 350, 394, 558, 596, 606, 637, 768
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 3 cut(s) 138, 249, 302
ScrFI CCNGG 6 cut(s) 83, 141, 152, 166, 438, 677
SduI GDGCHC 1 cut(s) 373
Sfr303I CCGCGG 1 cut(s) 915
SgrBI CCGCGG 1 cut(s) 915
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 3 cut(s) 806, 812, 1142
Sse9I AATT 4 cut(s) 60, 216, 589, 882
SspMI CTAG 2 cut(s) 191, 374
StyD4I CCNGG 6 cut(s) 81, 139, 150, 164, 436, 675
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 3 cut(s) 755, 805, 922
TaiI ACGT 3 cut(s) 123, 480, 510
TaqI TCGA 7 cut(s) 34, 246, 267, 543, 563, 891, 897
TaqII GACCGA 1 cut(s) 284
TasI AATT 4 cut(s) 60, 216, 589, 882
TatI WGTACW 1 cut(s) 654
TauI GCSGC 5 cut(s) 213, 352, 608, 639, 770
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 749
Tru9I TTAA 1 cut(s) 749
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 3 cut(s) 508, 816, 916
TseI GCWGC 3 cut(s) 393, 557, 595
Tsp45I GTSAC 3 cut(s) 508, 816, 916
TspDTI ATGAA 4 cut(s) 17, 209, 520, 1139
TspGWI ACGGA 2 cut(s) 214, 805
TspRI CASTG 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 178
XceI RCATGY 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 704
XspI CTAG 2 cut(s) 191, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.