Rorug04G0331600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016107
Physical Location & Seq
Forward (+)
50589083 .. 50591428
2346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0331600.1

Sequence Viewer

Length: 543 bp
ATGTTGGCCGCTCTACGCTCCCGATCGTCGTCCTCACTGCTTCTTCAACAATGGAGGCTAGGGTTTCCATCTCTGCACCAAGCCTTCTCCTTCTCCTCCGCCGCCGCCAAGGAAGGCCTGCTTGATCTCCAGGAGGTCGAGACGGTTCTCAGCGACGTCAAGGCCGACGACGTCAAGGTCATACCGGCGAACAAGCACTGCGAGTGGGCCGATTTCATGGTCCTCGCCACCGGAAGGTCCACCTGGCACGTCAAGAACATCGCCCAAGCCCTAATTTACAAGTCTAAGCAAAAGCAGAAAGGAGCTCAGCGCTTGGTGCTTCCCACTGTTGAAGGGCAAGAGGGAGGAAAGTGGATTGTCATCGACTCTGGGAAAGTGATAGTTCATGCCCTTGATGAGAATGCTAGAGCTTACTACAATTTGGAGACTCTTTGGACAACAAAGCCATCTGAGAAAGAACCAATTCAGGGTTTGGAAAAGGCTTTTGTGAAGGTTCGTCCTAAGAACAACTCCAAGAGGAAACCAGCACAGAAATGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SGL

Protein Analysis

180

Amino Acids

20.11

Weight (kDa)

9.61

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RsfS PF02410 45 - 145 2.2e-25 Ribosomal silencing factor during starvation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01410
fragaria_vesca FvH4_4g32390
malus_domestica MD16G1028500.v1.1
prunus_persica Prupe.1G324200_v2.0.a1
pyrus_communis pycom16g02440
rosa_laevigata RLG00000006110
rosa_multiflora Rmu_co8419081.1_g000001
rosa_roxburghii Rroxscaffold_5G00382130
rosa_rugosa Rorug04G0331600 Rorug07G0286600
rosa_samantha Rh4AG383400 Rh4BG397500 Rh4CG412700 Rh4DG390200
rosa_wichuraiana Rw4G033080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AatII GACGTC 2 cut(s) 159, 174
AccBSI CCGCTC 1 cut(s) 11
AciI CCGC 4 cut(s) 9, 99, 102, 105
AcoI YGGCCR 1 cut(s) 6
AcyI GRCGYC 2 cut(s) 156, 171
AfeI AGCGCT 1 cut(s) 311
AfiI CCNNNNNNNGG 2 cut(s) 234, 467
AgsI TTSAA 2 cut(s) 47, 332
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 2 cut(s) 129, 242
AluBI AGCT 2 cut(s) 305, 410
AluI AGCT 2 cut(s) 305, 410
Alw21I GWGCWC 1 cut(s) 307
Alw26I GTCTC 2 cut(s) 134, 419
Aor51HI AGCGCT 1 cut(s) 311
AoxI GGCC 4 cut(s) 6, 115, 162, 207
Asp700I GAANNNNTTC 1 cut(s) 462
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 3 cut(s) 207, 220, 237
AvaII GGWCC 2 cut(s) 220, 237
BanII GRGCYC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 307
BccI CCATC 2 cut(s) 76, 454
BciT130I CCWGG 2 cut(s) 131, 244
BcoDI GTCTC 2 cut(s) 134, 419
BfaI CTAG 2 cut(s) 59, 405
BfoI RGCGCY 1 cut(s) 313
BisI GCNGC 3 cut(s) 9, 102, 105
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 3 cut(s) 10, 103, 106
Bme1390I CCNGG 2 cut(s) 131, 244
Bme18I GGWCC 2 cut(s) 220, 237
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 3 cut(s) 207, 220, 237
BmrFI CCNGG 2 cut(s) 131, 244
BpmI CTGGAG 1 cut(s) 113
Bpu1102I GCTNAGC 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 359
BsaHI GRCGYC 2 cut(s) 156, 171
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 467
Bse118I RCCGGY 1 cut(s) 184
Bse8I GATNNNNATC 1 cut(s) 359
BseBI CCWGG 2 cut(s) 131, 244
BseDI CCNNGG 1 cut(s) 108
BseJI GATNNNNATC 1 cut(s) 359
BseLI CCNNNNNNNGG 2 cut(s) 234, 467
BseMII CTCAG 3 cut(s) 163, 320, 441
BseRI GAGGAG 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 59
Bsh1285I CGRYCG 1 cut(s) 26
BshFI GGCC 4 cut(s) 8, 117, 164, 209
BsiEI CGRYCG 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 307
BsiSI CCGG 2 cut(s) 185, 231
BslI CCNNNNNNNGG 2 cut(s) 234, 467
BsmAI GTCTC 2 cut(s) 134, 419
BsmBI CGTCTC 1 cut(s) 134
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 4 cut(s) 8, 117, 164, 209
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 2 cut(s) 23, 124
Bsp1720I GCTNAGC 1 cut(s) 306
BspACI CCGC 4 cut(s) 9, 99, 102, 105
BspANI GGCC 4 cut(s) 8, 117, 164, 209
BspCNI CTCAG 3 cut(s) 162, 319, 442
BsrBI CCGCTC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 23, 124
BssNI GRCGYC 2 cut(s) 156, 171
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 131, 244
Bst4CI ACNGT 2 cut(s) 145, 328
BstACI GRCGYC 2 cut(s) 156, 171
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 5 cut(s) 149, 285, 306, 450, 501
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 2 cut(s) 26, 127
BstMAI GTCTC 2 cut(s) 134, 419
BstMBI GATC 2 cut(s) 23, 124
BstMCI CGRYCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstNI CCWGG 2 cut(s) 131, 244
BstSCI CCNGG 2 cut(s) 129, 242
BsuRI GGCC 4 cut(s) 8, 117, 164, 209
BtgZI GCGATG 1 cut(s) 244
BtrI CACGTC 1 cut(s) 250
BtsI GCAGTG 2 cut(s) 35, 196
BtsIMutI CAGTG 3 cut(s) 35, 196, 324
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 312
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 3 cut(s) 207, 220, 237
CviAII CATG 2 cut(s) 217, 386
DdeI CTNAG 5 cut(s) 149, 285, 306, 450, 501
DpnI GATC 2 cut(s) 25, 126
DpnII GATC 2 cut(s) 23, 124
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 6
EciI GGCGGA 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 307
Eco47I GGWCC 2 cut(s) 220, 237
Eco47III AGCGCT 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 129, 242
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 2 cut(s) 220, 389
FaiI YATR 3 cut(s) 182, 218, 387
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 2 cut(s) 216, 385
Fnu4HI GCNGC 3 cut(s) 9, 102, 105
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 3 cut(s) 9, 102, 105
FspBI CTAG 2 cut(s) 59, 405
GlaI GCGC 1 cut(s) 311
GluI GCNGC 3 cut(s) 9, 102, 105
GsuI CTGGAG 1 cut(s) 113
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 4 cut(s) 8, 117, 164, 209
HapII CCGG 2 cut(s) 185, 231
HhaI GCGC 1 cut(s) 312
Hin1I GRCGYC 2 cut(s) 156, 171
Hin1II CATG 2 cut(s) 220, 389
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HinfI GANTC 2 cut(s) 365, 427
HpaII CCGG 2 cut(s) 185, 231
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 1 cut(s) 451
Hpy188III TCNNGA 3 cut(s) 21, 139, 253
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 4 cut(s) 31, 158, 170, 173
HpyAV CCTTC 6 cut(s) 94, 100, 107, 228, 326, 484
HpyCH4III ACNGT 2 cut(s) 145, 328
HpyCH4IV ACGT 3 cut(s) 156, 171, 249
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpyF3I CTNAG 5 cut(s) 149, 285, 306, 450, 501
HpySE526I ACGT 3 cut(s) 156, 171, 249
Hsp92I GRCGYC 2 cut(s) 156, 171
Hsp92II CATG 2 cut(s) 220, 389
HspAI GCGC 1 cut(s) 310
Kzo9I GATC 2 cut(s) 23, 124
LmnI GCTCC 2 cut(s) 23, 302
MaeI CTAG 2 cut(s) 59, 405
MaeII ACGT 3 cut(s) 156, 171, 249
MalI GATC 2 cut(s) 25, 126
MbiI CCGCTC 1 cut(s) 11
MboI GATC 2 cut(s) 23, 124
MboII GAAGA 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 3 cut(s) 273, 418, 462
MlyI GAGTC 2 cut(s) 359, 421
MnlI CCTC 8 cut(s) 43, 48, 106, 127, 233, 334, 338, 510
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 1 cut(s) 541
MslI CAYNNNNRTG 1 cut(s) 532
MspI CCGG 2 cut(s) 185, 231
MspR9I CCNGG 2 cut(s) 131, 244
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 2 cut(s) 131, 244
MwoI GCNNNNNNNGC 1 cut(s) 316
NdeII GATC 2 cut(s) 23, 124
NlaIII CATG 2 cut(s) 220, 389
PceI AGGCCT 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PctI GAATGC 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 462
PflFI GACNNNGTC 1 cut(s) 170
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 3 cut(s) 10, 103, 106
Ple19I CGATCG 1 cut(s) 26
PleI GAGTC 2 cut(s) 359, 421
PpsI GAGTC 2 cut(s) 359, 421
Psp124BI GAGCTC 1 cut(s) 307
Psp6I CCWGG 2 cut(s) 129, 242
PspGI CCWGG 2 cut(s) 129, 242
PspPI GGNCC 3 cut(s) 207, 220, 237
PsyI GACNNNGTC 1 cut(s) 170
PvuI CGATCG 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 532
SacI GAGCTC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 541
SatI GCNGC 3 cut(s) 9, 102, 105
Sau3AI GATC 2 cut(s) 23, 124
Sau96I GGNCC 3 cut(s) 207, 220, 237
SchI GAGTC 2 cut(s) 359, 421
ScrFI CCNGG 2 cut(s) 131, 244
SduI GDGCHC 1 cut(s) 307
SinI GGWCC 2 cut(s) 220, 237
SmiMI CAYNNNNRTG 1 cut(s) 532
Sse9I AATT 3 cut(s) 273, 418, 462
SseBI AGGCCT 1 cut(s) 117
SsiI CCGC 4 cut(s) 9, 99, 102, 105
SspMI CTAG 2 cut(s) 59, 405
SstI GAGCTC 1 cut(s) 307
StuI AGGCCT 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 129, 242
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 145, 328
TaiI ACGT 3 cut(s) 159, 174, 252
TaqI TCGA 2 cut(s) 138, 363
TasI AATT 3 cut(s) 273, 418, 462
TauI GCSGC 3 cut(s) 11, 104, 107
Tru1I TTAA 1 cut(s) 541
Tru9I TTAA 1 cut(s) 541
TscAI CASTG 3 cut(s) 42, 203, 331
TspDTI ATGAA 2 cut(s) 205, 374
TspRI CASTG 3 cut(s) 42, 203, 331
Tth111I GACNNNGTC 1 cut(s) 170
VpaK11BI GGWCC 2 cut(s) 220, 237
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 2 cut(s) 59, 405
ZraI GACGTC 2 cut(s) 157, 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.