Rorug07G0286600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016107
Physical Location & Seq
Forward (+)
27887778 .. 27892024
4247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0286600.1

Sequence Viewer

Length: 1704 bp
ATGGCTGCTCCTGCTGCTCCGGGGGAGAGGACCCTAAAAGAGACACCGACATGGACCGTGGCGGTCGTCTGTGCAGTTTTCATACTCATATCTCTAATCATAGAACATGGAATTCATGCTCTTGGAAAGTGGTTCCAGAAACGCAACAAGAAAGCCATGATTGAAGCTTTGGAGAAAATTAAAGCTGAGCTAATGCTGTTGGGATTCATATCTTTACTACTCACCGTGGGAACTCGATATCTTCCAAAGATATGTGTCCCCGCAAGTATTGCAGACACGATGCTTCCCTGCGATTTAAAGTCACAATACGCGGGCGACAGTGATAAGGGAGGGAAGGGCGACGGTGATAAAGATAAAGGAGGAGGCGGTGACCGACGGAAGTTACTTTCGTATGCCGAAAACATGATATGGCGTCGAGTCTTAGCTCCCAGTGGAGATTCCAGTTCTTGCTCATACGGTAAAGTGCCATTGATATCAATATCTGGAATGCACCAATTGCATGTATTCATCTTCGTCCTCACTGTTTTTCACGTTCTCTACAGTGTCCTCACTATGGCACTTGCGCAGGCCAAAATGAAGAAATGGAAGGCCTGGGAATCTGAGACAACGTCCTTGGAATACCAATTTACAAATGATCCTGCAAGGTTTAGGTTTACTCGTCAAACTTCATTTGTGAGGCGACACTCTGGCTTTTCTACAACACCTGGAATTAGATGGATCGTGGCATTCTTTCGGCAATTCTTCGGTTCGGTGACAAAGGTGGACTATCTGACCATGCGCCATGGATTTATAAATGCACATTTTGCTCCAAATAGCAAATTTGACTTCCATAATTACATCAAGAGATCTATGGAAGATGATTTTAAGGTGGTTGTGGGTATTAGTGTACCACTATGGATTTTCGCAGTGGTCTTCTTGCTTCTAAACGTTTACAGTAATAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATTCTTCTGTTGGTGGGTACAAAGCTTGAACTTATCATAATGGAGATGGCCCAAGAAATGCACGATCGAAATACAATTGTTAAAGGGGCTCCAGTAGTAGAGCCAAGCAATAAGTACTTTTGGTTTAATCGACCCGAGTGGATTCTCCTCTTGATTCATTTCACATTATTTCAGAACGCATTCCAAATGGCGTATTTCTTGTGGGTATCTGCTGAATTTGGCTTCACTTCATGCTTCCACGAAAACTTGCCTCTCATAATCACAAGGGTTTGCCTTGGATTTGTCCTACAAATCCTATGCAGTTACATTACCTTCCCTCTTTATGCTTTGATCACACAAATGGGATCTCACTGGAAGAAAGCAATTTTCGAGGAGCAAACAGCAAAAGCTCTTAAGAACTGGCAGAAGGCTGCAAAGAATCGTAAAAAGTTAAGGAGCAAAGGAGGCGATGCTTCTGTTAACTCGTTTATGAGTGCGGAAAATACACCAAGCCGGGGTTCATCACCAATGCACCTCCTCCACAACCAAAAGCAGAGGTCCAATCAATCGGATCTCGAAAGTGTCCTTAACTCCCCGAGATCTGTTTCTTACCAATCTGATACCGATCTATCTGAGATGGAGGGTGGCTCTGCACATGGTCATGGCAGTATTGATGCTCTAAGAAGAGAAGATCATCATCGACCAGAAAGGAAGGAAGGGTTGCATGATTTTTCCTTTGTTCAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SGL

Protein Analysis

567

Amino Acids

64.19

Weight (kDa)

9.38

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 9 - 501 8.6e-221 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01410
fragaria_vesca FvH4_4g32390
malus_domestica MD16G1028500.v1.1
prunus_persica Prupe.1G324200_v2.0.a1
pyrus_communis pycom16g02440
rosa_laevigata RLG00000006110
rosa_multiflora Rmu_co8419081.1_g000001
rosa_roxburghii Rroxscaffold_5G00382130
rosa_rugosa Rorug04G0331600 Rorug07G0286600
rosa_samantha Rh4AG383400 Rh4BG397500 Rh4CG412700 Rh4DG390200
rosa_wichuraiana Rw4G033080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 791
Acc16I TGCGCA 1 cut(s) 564
AccII CGCG 1 cut(s) 311
AciI CCGC 5 cut(s) 62, 261, 311, 366, 1451
AclI AACGTT 1 cut(s) 927
AclWI GGATC 4 cut(s) 629, 725, 1327, 1533
AcsI RAATTY 3 cut(s) 111, 818, 1190
AcyI GRCGYC 1 cut(s) 412
AfaI GTAC 3 cut(s) 888, 994, 1091
AfiI CCNNNNNNNGG 2 cut(s) 553, 1469
AflII CTTAAG 1 cut(s) 1367
AgsI TTSAA 2 cut(s) 164, 1004
AjnI CCWGG 2 cut(s) 590, 703
AjuI GAANNNNNNNTTGG 2 cut(s) 1456, 1488
AluBI AGCT 6 cut(s) 167, 185, 190, 425, 1000, 1364
AluI AGCT 6 cut(s) 167, 185, 190, 425, 1000, 1364
Alw26I GTCTC 2 cut(s) 35, 596
AlwI GGATC 4 cut(s) 629, 725, 1327, 1533
Ama87I CYCGRG 2 cut(s) 1109, 1549
AoxI GGCC 3 cut(s) 567, 588, 1023
ApeKI GCWGC 3 cut(s) 5, 14, 1385
ApoI RAATTY 3 cut(s) 111, 818, 1190
Asp700I GAANNNNTTC 1 cut(s) 1154
AspLEI GCGC 2 cut(s) 565, 780
AspS9I GGNCC 4 cut(s) 30, 54, 1024, 1512
AsuC2I CCSGG 2 cut(s) 21, 1469
AsuHPI GGTGA 5 cut(s) 214, 356, 380, 763, 1470
AvaI CYCGRG 2 cut(s) 1109, 1549
AvaII GGWCC 3 cut(s) 30, 54, 1512
BanII GRGCYC 1 cut(s) 1066
BbsI GAAGAC 1 cut(s) 904
BbvI GCAGC 1 cut(s) 1372
BccI CCATC 3 cut(s) 708, 1015, 1585
BciT130I CCWGG 2 cut(s) 592, 705
BclI TGATCA 1 cut(s) 1305
BcnI CCSGG 2 cut(s) 21, 1469
BcoDI GTCTC 2 cut(s) 35, 596
BfmI CTRYAG 1 cut(s) 538
BfrI CTTAAG 1 cut(s) 1367
BglII AGATCT 2 cut(s) 845, 1553
BisI GCNGC 3 cut(s) 6, 15, 1386
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 3 cut(s) 7, 16, 1387
BmcAI AGTACT 1 cut(s) 1091
Bme1390I CCNGG 4 cut(s) 21, 592, 705, 1469
Bme18I GGWCC 3 cut(s) 30, 54, 1512
BmeT110I CYCGRG 2 cut(s) 1109, 1549
BmgT120I GGNCC 4 cut(s) 30, 54, 1024, 1512
BmiI GGNNCC 3 cut(s) 32, 134, 1065
BmrFI CCNGG 4 cut(s) 21, 592, 705, 1469
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 3 cut(s) 270, 1414, 1618
BmuI ACTGGG 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 904
BplI GAGNNNNNCTC 2 cut(s) 1586, 1618
BpmI CTGGAG 1 cut(s) 1050
Bpu1102I GCTNAGC 1 cut(s) 186
BpuMI CCSGG 2 cut(s) 21, 1469
BsaBI GATNNNNATC 3 cut(s) 208, 1578, 1650
BsaHI GRCGYC 1 cut(s) 412
BsaJI CCNNGG 8 cut(s) 20, 57, 225, 591, 612, 781, 1249, 1468
Bsc4I CCNNNNNNNGG 2 cut(s) 553, 1469
Bse1I ACTGG 5 cut(s) 429, 441, 1067, 1331, 1379
Bse8I GATNNNNATC 3 cut(s) 208, 1578, 1650
BseBI CCWGG 2 cut(s) 592, 705
BseDI CCNNGG 8 cut(s) 20, 57, 225, 591, 612, 781, 1249, 1468
BseJI GATNNNNATC 3 cut(s) 208, 1578, 1650
BseLI CCNNNNNNNGG 2 cut(s) 553, 1469
BseMII CTCAG 3 cut(s) 177, 591, 1578
BseNI ACTGG 5 cut(s) 429, 441, 1067, 1331, 1379
BseRI GAGGAG 4 cut(s) 375, 1112, 1361, 1481
BseXI GCAGC 1 cut(s) 1372
BsgI GTGCAG 2 cut(s) 93, 1590
Bsh1236I CGCG 1 cut(s) 311
Bsh1285I CGRYCG 2 cut(s) 66, 1042
BshFI GGCC 3 cut(s) 569, 590, 1025
BsiEI CGRYCG 2 cut(s) 66, 1042
BsiHKCI CYCGRG 2 cut(s) 1109, 1549
BsiSI CCGG 2 cut(s) 20, 1468
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 2 cut(s) 553, 1469
BsmAI GTCTC 2 cut(s) 35, 596
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 3 cut(s) 492, 725, 1154
BsnI GGCC 3 cut(s) 569, 590, 1025
BsoBI CYCGRG 2 cut(s) 1109, 1549
Bsp1286I GDGCHC 1 cut(s) 1066
Bsp1720I GCTNAGC 1 cut(s) 186
Bsp19I CCATGG 1 cut(s) 781
BspACI CCGC 5 cut(s) 62, 261, 311, 366, 1451
BspANI GGCC 3 cut(s) 569, 590, 1025
BspCNI CTCAG 3 cut(s) 178, 592, 1579
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 3 cut(s) 32, 134, 1065
BspPI GGATC 4 cut(s) 629, 725, 1327, 1533
BspTI CTTAAG 1 cut(s) 1367
BsrI ACTGG 5 cut(s) 429, 441, 1067, 1331, 1379
BssECI CCNNGG 8 cut(s) 20, 57, 225, 591, 612, 781, 1249, 1468
BssNI GRCGYC 1 cut(s) 412
BssT1I CCWWGG 3 cut(s) 612, 781, 1249
Bst2UI CCWGG 2 cut(s) 592, 705
Bst4CI ACNGT 8 cut(s) 58, 226, 320, 344, 458, 523, 542, 935
Bst6I CTCTTC 1 cut(s) 1633
BstACI GRCGYC 1 cut(s) 412
BstAFI CTTAAG 1 cut(s) 1367
BstAPI GCANNNNNTGC 3 cut(s) 269, 496, 803
BstC8I GCNNGC 2 cut(s) 313, 567
BstDEI CTNAG 5 cut(s) 186, 421, 600, 1587, 1634
BstDSI CCRYGG 3 cut(s) 57, 225, 781
BstEII GGTNACC 1 cut(s) 368
BstFNI CGCG 1 cut(s) 311
BstHHI GCGC 2 cut(s) 565, 780
BstMAI GTCTC 2 cut(s) 35, 596
BstMCI CGRYCG 2 cut(s) 66, 1042
BstMWI GCNNNNNNNGC 6 cut(s) 11, 14, 269, 496, 803, 1419
BstNI CCWGG 2 cut(s) 592, 705
BstNSI RCATGY 1 cut(s) 503
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 4 cut(s) 19, 590, 703, 1467
BstSFI CTRYAG 1 cut(s) 538
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 1372
BstV2I GAAGAC 1 cut(s) 904
BstX2I RGATCY 4 cut(s) 845, 1319, 1525, 1553
BstYI RGATCY 4 cut(s) 845, 1319, 1525, 1553
BsuRI GGCC 3 cut(s) 569, 590, 1025
BtgI CCRYGG 3 cut(s) 57, 225, 781
BtgZI GCGATG 1 cut(s) 1437
BtsI GCAGTG 1 cut(s) 912
BtsIMutI CAGTG 6 cut(s) 325, 436, 519, 547, 912, 1324
Cac8I GCNNGC 2 cut(s) 313, 567
CfoI GCGC 2 cut(s) 565, 780
Cfr13I GGNCC 4 cut(s) 30, 54, 1024, 1512
CseI GACGC 1 cut(s) 401
Csp6I GTAC 3 cut(s) 887, 993, 1090
CviQI GTAC 3 cut(s) 887, 993, 1090
DdeI CTNAG 5 cut(s) 186, 421, 600, 1587, 1634
DraI TTTAAA 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 1633
EarI CTCTTC 1 cut(s) 1633
Eco130I CCWWGG 3 cut(s) 612, 781, 1249
Eco147I AGGCCT 1 cut(s) 590
Eco24I GRGCYC 1 cut(s) 1066
Eco32I GATATC 2 cut(s) 239, 474
Eco47I GGWCC 3 cut(s) 30, 54, 1512
Eco88I CYCGRG 2 cut(s) 1109, 1549
Eco91I GGTNACC 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 590, 703
EcoRV GATATC 2 cut(s) 239, 474
EcoT14I CCWWGG 3 cut(s) 612, 781, 1249
EcoT38I GRGCYC 1 cut(s) 1066
ErhI CCWWGG 3 cut(s) 612, 781, 1249
FaqI GGGAC 1 cut(s) 242
FauI CCCGC 2 cut(s) 268, 304
FbaI TGATCA 1 cut(s) 1305
Fnu4HI GCNGC 3 cut(s) 6, 15, 1386
FriOI GRGCYC 1 cut(s) 1066
Fsp4HI GCNGC 3 cut(s) 6, 15, 1386
FspI TGCGCA 1 cut(s) 564
GlaI GCGC 2 cut(s) 564, 779
GluI GCNGC 3 cut(s) 6, 15, 1386
GsuI CTGGAG 1 cut(s) 1050
HaeIII GGCC 3 cut(s) 569, 590, 1025
HapII CCGG 2 cut(s) 20, 1468
HgaI GACGC 1 cut(s) 401
HhaI GCGC 2 cut(s) 565, 780
Hin1I GRCGYC 1 cut(s) 412
Hin6I GCGC 2 cut(s) 563, 778
HinP1I GCGC 2 cut(s) 563, 778
HincII GTYRAC 1 cut(s) 1435
HindII GTYRAC 1 cut(s) 1435
HindIII AAGCTT 2 cut(s) 165, 998
HinfI GANTC 7 cut(s) 204, 417, 437, 596, 1117, 1129, 1393
HpaI GTTAAC 1 cut(s) 1435
HpaII CCGG 2 cut(s) 20, 1468
HphI GGTGA 5 cut(s) 214, 356, 380, 763, 1470
Hpy166II GTNNAC 5 cut(s) 654, 763, 887, 931, 1435
Hpy188I TCNGA 6 cut(s) 601, 771, 1149, 1525, 1573, 1588
Hpy188III TCNNGA 5 cut(s) 136, 483, 841, 1126, 1529
Hpy8I GTNNAC 5 cut(s) 654, 763, 887, 931, 1435
Hpy99I CGWCG 3 cut(s) 344, 378, 417
HpyAV CCTTC 6 cut(s) 328, 580, 1297, 1375, 1660, 1664
HpyCH4III ACNGT 8 cut(s) 58, 226, 320, 344, 458, 523, 542, 935
HpyCH4IV ACGT 3 cut(s) 531, 608, 927
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 14, 269, 496, 803, 1419
HpyF3I CTNAG 5 cut(s) 186, 421, 600, 1587, 1634
HpySE526I ACGT 3 cut(s) 531, 608, 927
Hsp92I GRCGYC 1 cut(s) 412
HspAI GCGC 2 cut(s) 563, 778
Ksp22I TGATCA 1 cut(s) 1305
KspAI GTTAAC 1 cut(s) 1435
LmnI GCTCC 7 cut(s) 13, 22, 430, 811, 1069, 1348, 1410
Lsp1109I GCAGC 1 cut(s) 1372
LweI GCATC 3 cut(s) 270, 1414, 1618
MaeII ACGT 3 cut(s) 531, 608, 927
MaeIII GTNAC 5 cut(s) 300, 368, 381, 751, 1277
MfeI CAATTG 2 cut(s) 494, 1050
MflI RGATCY 4 cut(s) 845, 1319, 1525, 1553
MhlI GDGCHC 1 cut(s) 1066
MlyI GAGTC 1 cut(s) 426
MroXI GAANNNNTTC 1 cut(s) 1154
MseI TTAA 9 cut(s) 180, 296, 864, 1056, 1101, 1368, 1406, 1434, 1542
MslI CAYNNNNRTG 3 cut(s) 49, 1313, 1614
MspCI CTTAAG 1 cut(s) 1367
MspI CCGG 2 cut(s) 20, 1468
MspR9I CCNGG 4 cut(s) 21, 592, 705, 1469
MunI CAATTG 2 cut(s) 494, 1050
Mva1269I GAATGC 3 cut(s) 492, 725, 1154
MvaI CCWGG 2 cut(s) 592, 705
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 6 cut(s) 11, 14, 269, 496, 803, 1419
NciI CCSGG 2 cut(s) 21, 1469
NcoI CCATGG 1 cut(s) 781
NlaIV GGNNCC 3 cut(s) 32, 134, 1065
NmuCI GTSAC 3 cut(s) 300, 368, 751
NsbI TGCGCA 1 cut(s) 564
NspI RCATGY 1 cut(s) 503
PceI AGGCCT 1 cut(s) 590
PctI GAATGC 3 cut(s) 492, 725, 1154
PdmI GAANNNNTTC 1 cut(s) 1154
PfeI GAWTC 6 cut(s) 204, 437, 596, 1117, 1129, 1393
PflFI GACNNNGTC 1 cut(s) 607
PkrI GCNGC 3 cut(s) 7, 16, 1387
Ple19I CGATCG 1 cut(s) 1042
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
PpuMI RGGWCCY 1 cut(s) 30
PsiI TTATAA 1 cut(s) 791
Psp1406I AACGTT 1 cut(s) 927
Psp5II RGGWCCY 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 590, 703
PspEI GGTNACC 1 cut(s) 368
PspGI CCWGG 2 cut(s) 590, 703
PspN4I GGNNCC 3 cut(s) 32, 134, 1065
PspPI GGNCC 4 cut(s) 30, 54, 1024, 1512
PspPPI RGGWCCY 1 cut(s) 30
PsuI RGATCY 4 cut(s) 845, 1319, 1525, 1553
PsyI GACNNNGTC 1 cut(s) 607
PvuI CGATCG 1 cut(s) 1042
RsaI GTAC 3 cut(s) 888, 994, 1091
RsaNI GTAC 3 cut(s) 887, 993, 1090
RseI CAYNNNNRTG 3 cut(s) 49, 1313, 1614
SaqAI TTAA 9 cut(s) 180, 296, 864, 1056, 1101, 1368, 1406, 1434, 1542
SatI GCNGC 3 cut(s) 6, 15, 1386
Sau96I GGNCC 4 cut(s) 30, 54, 1024, 1512
ScaI AGTACT 1 cut(s) 1091
SchI GAGTC 1 cut(s) 426
ScrFI CCNGG 4 cut(s) 21, 592, 705, 1469
SduI GDGCHC 1 cut(s) 1066
SfaNI GCATC 3 cut(s) 270, 1414, 1618
SfcI CTRYAG 1 cut(s) 538
SinI GGWCC 3 cut(s) 30, 54, 1512
SmiMI CAYNNNNRTG 3 cut(s) 49, 1313, 1614
SmlI CTYRAG 1 cut(s) 1367
SmoI CTYRAG 1 cut(s) 1367
SseBI AGGCCT 1 cut(s) 590
SsiI CCGC 5 cut(s) 62, 261, 311, 366, 1451
StuI AGGCCT 1 cut(s) 590
StyD4I CCNGG 4 cut(s) 19, 590, 703, 1467
StyI CCWWGG 3 cut(s) 612, 781, 1249
TaaI ACNGT 8 cut(s) 58, 226, 320, 344, 458, 523, 542, 935
TaiI ACGT 3 cut(s) 534, 611, 930
TaqI TCGA 7 cut(s) 235, 415, 1042, 1105, 1344, 1530, 1654
TaqII GACCGA 1 cut(s) 387
TatI WGTACW 1 cut(s) 1089
TfiI GAWTC 6 cut(s) 204, 437, 596, 1117, 1129, 1393
Tru1I TTAA 9 cut(s) 180, 296, 864, 1056, 1101, 1368, 1406, 1434, 1542
Tru9I TTAA 9 cut(s) 180, 296, 864, 1056, 1101, 1368, 1406, 1434, 1542
TscAI CASTG 6 cut(s) 325, 436, 526, 547, 912, 1331
TseFI GTSAC 3 cut(s) 300, 368, 751
TseI GCWGC 3 cut(s) 5, 14, 1385
Tsp45I GTSAC 3 cut(s) 300, 368, 751
TspDTI ATGAA 9 cut(s) 70, 104, 196, 496, 590, 657, 1121, 1194, 1464
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 6 cut(s) 325, 436, 526, 547, 912, 1331
Tth111I GACNNNGTC 1 cut(s) 607
Vha464I CTTAAG 1 cut(s) 1367
VpaK11BI GGWCC 3 cut(s) 30, 54, 1512
XapI RAATTY 3 cut(s) 111, 818, 1190
XceI RCATGY 1 cut(s) 503
XmnI GAANNNNTTC 1 cut(s) 1154
ZrmI AGTACT 1 cut(s) 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.