pycom16g02440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0016107
Physical Location & Seq
Forward (+)
1558612 .. 1559721
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g02440.1

Sequence Viewer

Length: 1110 bp
ATGCCTCTAATCGCATCTAAACCATCCTTAATCTCCCTCGTCGCCGCCGTTCTCATCATCTTGGTGGCCCCAATCCCATCGCTGACCCACGCCGGAAAGCCCCACCTCATCAATTTCCGATCCCCCAACCTCTTCCCCGAAGGCCTCGCCTACGACCCATCCGCCCAGCACTTCATTGTCGGCTCCATCCGCCACCGCACCATCCACTCTGTCTCCGACGCCGGCGTCGTCGATACTCTCATCTCCGACCCCACCCTCCCCGACAACGTCACCGTCCTCGGCCTCGCCGTCGACAAACTCAACAACCGCCTCCTCGCCTGCATCACTGCGATGGACCCGCTCCCCCAATTCCACGCGCTCGCTGCCTACGACCTCCGCACGCGCCAGCGCCTCTTCCTCGCTCCCCTCCCCTCCGACGACGACGGGCCGCGTCCGGTAGCGAACGACGTCGCGGTGGACTTCAAGGGCAACGCCTACGTCACCAACTCGGCCGGCAACTACATCTGGAAGGTCAACGCCCGAGGGGAGGCTTCCATCTTCTCCAAGTCACGCGCCTTCACTTCGCAGCGCGTGGACCCCGACTTGCCGTACAGTTACTGCGGCCTGAACGGCGTCGTTTACAACAGCAAGGGATATCTCTTGGTGGTGCAATCGAACACCGGCAAGATTTTCAAGGTGGACGCCGACGACGGCACGGCGAGGCTGGTGCTGCTGCCGGAGGACTTAAATTTCGCCGACGGGGTCGCGATCCGAAGCGACGGCGTTGTTCTGGTGGTGTCCCACAAGACACTGTGGTTCCTGAAGAGCCAGGACAGTTGGGGGGAGGGCGGAATTTATGACAAAATTGCCCTTGATCCGGAGGGGTTTCCGACTTCGGTGGCGGTCGGGGGGGAGGACAGGGTGTACGTGTTGCGGGGGCACGTGTTGGAGGGTGCGAGGGGAAATGTGGAGCGGGAGGAGTTTAGTATTGGGGAGGTGAGGTCGGAGAGGGAGAGCAAGGAAGACGGTGTTTGGATCTTCGTTTTGATCGGGTTGGGATTGGCTTATTTCTTGTTTTGGAGGTTTCAGATGAGGCACCTCGTTGGCAACCTGAACAAAAAAACCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SGL

Protein Analysis

370

Amino Acids

40.37

Weight (kDa)

6.15

Isoelectric Point (pI)

25.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGL PF08450 45 - 300 1.3e-06 SMP-30/Gluconolactonase/LRE-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01410
fragaria_vesca FvH4_4g32390
malus_domestica MD16G1028500.v1.1
prunus_persica Prupe.1G324200_v2.0.a1
pyrus_communis pycom16g02440
rosa_laevigata RLG00000006110
rosa_multiflora Rmu_co8419081.1_g000001
rosa_roxburghii Rroxscaffold_5G00382130
rosa_rugosa Rorug04G0331600 Rorug07G0286600
rosa_samantha Rh4AG383400 Rh4BG397500 Rh4CG412700 Rh4DG390200
rosa_wichuraiana Rw4G033080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AatII GACGTC 1 cut(s) 450
AccB1I GGYRCC 1 cut(s) 1074
AccBSI CCGCTC 2 cut(s) 340, 952
AccI GTMKAC 1 cut(s) 291
AccII CGCG 7 cut(s) 356, 382, 430, 452, 552, 570, 746
AccIII TCCGGA 1 cut(s) 856
AclWI GGATC 4 cut(s) 114, 742, 848, 1022
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 2 cut(s) 727, 831
AcuI CTGAAG 1 cut(s) 821
AcvI CACGTG 1 cut(s) 922
AcyI GRCGYC 5 cut(s) 219, 225, 447, 612, 681
AfaI GTAC 2 cut(s) 590, 905
AfiI CCNNNNNNNGG 2 cut(s) 526, 856
AflIII ACRYGT 2 cut(s) 906, 921
AgsI TTSAA 2 cut(s) 463, 673
AjnI CCWGG 1 cut(s) 807
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 4 cut(s) 114, 742, 848, 1022
AlwNI CAGNNNCTG 1 cut(s) 597
Ama87I CYCGRG 1 cut(s) 519
Aor13HI TCCGGA 1 cut(s) 856
AoxI GGCC 6 cut(s) 66, 142, 280, 425, 489, 601
ApeKI GCWGC 4 cut(s) 362, 565, 709, 712
ApoI RAATTY 2 cut(s) 727, 831
ArsI GACNNNNNNTTYG 2 cut(s) 713, 745
AspLEI GCGC 5 cut(s) 358, 384, 390, 554, 570
AspS9I GGNCC 4 cut(s) 67, 334, 425, 574
AsuHPI GGTGA 3 cut(s) 262, 472, 988
AvaI CYCGRG 1 cut(s) 519
AvaII GGWCC 2 cut(s) 334, 574
BaeGI GKGCMC 1 cut(s) 921
BanI GGYRCC 1 cut(s) 1074
BbrPI CACGTG 1 cut(s) 922
BbsI GAAGAC 1 cut(s) 1008
BbvI GCAGC 4 cut(s) 349, 577, 696, 699
BccI CCATC 7 cut(s) 31, 85, 166, 194, 209, 325, 542
BceAI ACGGC 7 cut(s) 32, 272, 571, 625, 706, 711, 775
BcgI CGANNNNNNTGC 2 cut(s) 688, 722
BciT130I CCWGG 1 cut(s) 809
BcoDI GTCTC 1 cut(s) 217
BfoI RGCGCY 1 cut(s) 391
BglI GCCNNNNNGGC 1 cut(s) 609
BisI GCNGC 7 cut(s) 45, 363, 428, 566, 601, 710, 713
BlsI GCNGC 7 cut(s) 46, 364, 429, 567, 602, 711, 714
Bme1390I CCNGG 1 cut(s) 809
Bme18I GGWCC 2 cut(s) 334, 574
BmeT110I CYCGRG 1 cut(s) 519
BmgT120I GGNCC 4 cut(s) 67, 334, 425, 574
BmiI GGNNCC 6 cut(s) 69, 184, 336, 576, 797, 1076
BmrFI CCNGG 1 cut(s) 809
BmsI GCATC 2 cut(s) 23, 330
BpiI GAAGAC 1 cut(s) 1008
BsaAI YACGTR 2 cut(s) 907, 922
BsaHI GRCGYC 5 cut(s) 219, 225, 447, 612, 681
BsaJI CCNNGG 2 cut(s) 277, 520
BsaWI WCCGGW 2 cut(s) 433, 856
BsaXI ACNNNNNCTCC 4 cut(s) 197, 227, 965, 995
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 856
Bse118I RCCGGY 3 cut(s) 221, 491, 659
BseAI TCCGGA 1 cut(s) 856
BseBI CCWGG 1 cut(s) 809
BseDI CCNNGG 2 cut(s) 277, 520
BseGI GGATG 4 cut(s) 23, 158, 186, 201
BseLI CCNNNNNNNGG 2 cut(s) 526, 856
BseRI GAGGAG 2 cut(s) 302, 971
BseSI GKGCMC 1 cut(s) 921
BseX3I CGGCCG 1 cut(s) 489
BseXI GCAGC 4 cut(s) 349, 577, 696, 699
BseYI CCCAGC 1 cut(s) 165
Bsh1236I CGCG 7 cut(s) 356, 382, 430, 452, 552, 570, 746
Bsh1285I CGRYCG 2 cut(s) 492, 885
BshFI GGCC 6 cut(s) 68, 144, 282, 427, 491, 603
BshNI GGYRCC 1 cut(s) 1074
BsiEI CGRYCG 2 cut(s) 492, 885
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 7 cut(s) 93, 222, 434, 492, 660, 716, 857
BslFI GGGAC 1 cut(s) 763
BslI CCNNNNNNNGG 2 cut(s) 526, 856
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 763
BsnI GGCC 6 cut(s) 68, 144, 282, 427, 491, 603
BsoBI CYCGRG 1 cut(s) 519
Bsp1286I GDGCHC 1 cut(s) 921
Bsp13I TCCGGA 1 cut(s) 856
Bsp143I GATC 5 cut(s) 119, 747, 853, 1014, 1026
Bsp68I TCGCGA 1 cut(s) 746
BspANI GGCC 6 cut(s) 68, 144, 282, 427, 491, 603
BspEI TCCGGA 1 cut(s) 856
BspFNI CGCG 7 cut(s) 356, 382, 430, 452, 552, 570, 746
BspLI GGNNCC 6 cut(s) 69, 184, 336, 576, 797, 1076
BspPI GGATC 4 cut(s) 114, 742, 848, 1022
BspQI GCTCTTC 1 cut(s) 797
BspT107I GGYRCC 1 cut(s) 1074
BsrBI CCGCTC 2 cut(s) 340, 952
BsrFI RCCGGY 3 cut(s) 221, 491, 659
BssAI RCCGGY 3 cut(s) 221, 491, 659
BssECI CCNNGG 2 cut(s) 277, 520
BssMI GATC 5 cut(s) 119, 747, 853, 1014, 1026
BssNI GRCGYC 5 cut(s) 219, 225, 447, 612, 681
Bst2UI CCWGG 1 cut(s) 809
Bst4CI ACNGT 5 cut(s) 274, 593, 792, 815, 1007
Bst6I CTCTTC 3 cut(s) 137, 398, 797
BstACI GRCGYC 5 cut(s) 219, 225, 447, 612, 681
BstBAI YACGTR 2 cut(s) 907, 922
BstC8I GCNNGC 6 cut(s) 223, 319, 360, 380, 386, 493
BstF5I GGATG 4 cut(s) 23, 158, 186, 201
BstFNI CGCG 7 cut(s) 356, 382, 430, 452, 552, 570, 746
BstH2I RGCGCY 1 cut(s) 391
BstHHI GCGC 5 cut(s) 358, 384, 390, 554, 570
BstKTI GATC 5 cut(s) 122, 750, 856, 1017, 1029
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 5 cut(s) 119, 747, 853, 1014, 1026
BstMCI CGRYCG 2 cut(s) 492, 885
BstMWI GCNNNNNNNGC 4 cut(s) 189, 362, 609, 709
BstNI CCWGG 1 cut(s) 809
BstSCI CCNGG 1 cut(s) 807
BstSLI GKGCMC 1 cut(s) 921
BstUI CGCG 7 cut(s) 356, 382, 430, 452, 552, 570, 746
BstV1I GCAGC 4 cut(s) 349, 577, 696, 699
BstV2I GAAGAC 1 cut(s) 1008
BstX2I RGATCY 1 cut(s) 1014
BstYI RGATCY 1 cut(s) 1014
BstZI CGGCCG 1 cut(s) 489
BsuRI GGCC 6 cut(s) 68, 144, 282, 427, 491, 603
BtgZI GCGATG 2 cut(s) 63, 344
BtsCI GGATG 4 cut(s) 23, 158, 186, 201
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 324, 788
BtuMI TCGCGA 1 cut(s) 746
Cac8I GCNNGC 6 cut(s) 223, 319, 360, 380, 386, 493
CaiI CAGNNNCTG 1 cut(s) 597
CfoI GCGC 5 cut(s) 358, 384, 390, 554, 570
Cfr10I RCCGGY 3 cut(s) 221, 491, 659
Cfr13I GGNCC 4 cut(s) 67, 334, 425, 574
CseI GACGC 5 cut(s) 214, 227, 419, 601, 689
Csp6I GTAC 2 cut(s) 589, 904
CviQI GTAC 2 cut(s) 589, 904
DpnI GATC 5 cut(s) 121, 749, 855, 1016, 1028
DpnII GATC 5 cut(s) 119, 747, 853, 1014, 1026
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
EaeI YGGCCR 1 cut(s) 489
EagI CGGCCG 1 cut(s) 489
Eam1104I CTCTTC 3 cut(s) 137, 398, 797
EarI CTCTTC 3 cut(s) 137, 398, 797
EciI GGCGGA 3 cut(s) 151, 179, 843
EclXI CGGCCG 1 cut(s) 489
Eco147I AGGCCT 1 cut(s) 144
Eco32I GATATC 1 cut(s) 635
Eco47I GGWCC 2 cut(s) 334, 574
Eco52I CGGCCG 1 cut(s) 489
Eco57I CTGAAG 1 cut(s) 821
Eco72I CACGTG 1 cut(s) 922
Eco88I CYCGRG 1 cut(s) 519
EcoRII CCWGG 1 cut(s) 807
EcoRV GATATC 1 cut(s) 635
FaiI YATR 1 cut(s) 837
FaqI GGGAC 1 cut(s) 763
FauI CCCGC 3 cut(s) 345, 906, 945
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 7 cut(s) 45, 363, 428, 566, 601, 710, 713
FokI GGATG 4 cut(s) 10, 145, 173, 188
Fsp4HI GCNGC 7 cut(s) 45, 363, 428, 566, 601, 710, 713
GlaI GCGC 5 cut(s) 357, 383, 389, 553, 569
GluI GCNGC 7 cut(s) 45, 363, 428, 566, 601, 710, 713
GsaI CCCAGC 1 cut(s) 169
HaeII RGCGCY 1 cut(s) 391
HaeIII GGCC 6 cut(s) 68, 144, 282, 427, 491, 603
HapII CCGG 7 cut(s) 93, 222, 434, 492, 660, 716, 857
HgaI GACGC 5 cut(s) 214, 227, 419, 601, 689
HhaI GCGC 5 cut(s) 358, 384, 390, 554, 570
Hin1I GRCGYC 5 cut(s) 219, 225, 447, 612, 681
Hin6I GCGC 5 cut(s) 356, 382, 388, 552, 568
HinP1I GCGC 5 cut(s) 356, 382, 388, 552, 568
HincII GTYRAC 2 cut(s) 292, 514
HindII GTYRAC 2 cut(s) 292, 514
HpaII CCGG 7 cut(s) 93, 222, 434, 492, 660, 716, 857
HphI GGTGA 3 cut(s) 262, 472, 988
Hpy166II GTNNAC 7 cut(s) 292, 457, 514, 574, 619, 679, 904
Hpy188I TCNGA 8 cut(s) 119, 217, 247, 415, 752, 870, 985, 1068
Hpy188III TCNNGA 4 cut(s) 505, 745, 799, 857
Hpy8I GTNNAC 7 cut(s) 292, 457, 514, 574, 619, 679, 904
HpyAV CCTTC 3 cut(s) 134, 502, 565
HpyCH4III ACNGT 5 cut(s) 274, 593, 792, 815, 1007
HpyCH4IV ACGT 5 cut(s) 267, 447, 477, 906, 921
HpyCH4V TGCA 2 cut(s) 321, 649
HpyF10VI GCNNNNNNNGC 4 cut(s) 189, 362, 609, 709
HpySE526I ACGT 5 cut(s) 267, 447, 477, 906, 921
Hsp92I GRCGYC 5 cut(s) 219, 225, 447, 612, 681
HspAI GCGC 5 cut(s) 356, 382, 388, 552, 568
Kpn2I TCCGGA 1 cut(s) 856
KroI GCCGGC 2 cut(s) 221, 491
KroNI GCCGGC 2 cut(s) 223, 493
Kzo9I GATC 5 cut(s) 119, 747, 853, 1014, 1026
LguI GCTCTTC 1 cut(s) 797
LmnI GCTCC 4 cut(s) 188, 345, 406, 949
Lsp1109I GCAGC 4 cut(s) 349, 577, 696, 699
LweI GCATC 2 cut(s) 23, 330
MaeII ACGT 5 cut(s) 267, 447, 477, 906, 921
MaeIII GTNAC 4 cut(s) 268, 478, 546, 593
MalI GATC 5 cut(s) 121, 749, 855, 1016, 1028
MbiI CCGCTC 2 cut(s) 340, 952
MboI GATC 5 cut(s) 119, 747, 853, 1014, 1026
MboII GAAGA 6 cut(s) 124, 385, 529, 814, 1009, 1013
MflI RGATCY 1 cut(s) 1014
MhlI GDGCHC 1 cut(s) 921
MluCI AATT 6 cut(s) 112, 347, 727, 831, 843, 1105
MmeI TCCRAC 6 cut(s) 240, 270, 438, 893, 906, 963
MreI CGCCGGCG 1 cut(s) 221
MroI TCCGGA 1 cut(s) 856
MroNI GCCGGC 2 cut(s) 221, 491
MseI TTAA 2 cut(s) 29, 725
MslI CAYNNNNRTG 2 cut(s) 62, 329
MspI CCGG 7 cut(s) 93, 222, 434, 492, 660, 716, 857
MspR9I CCNGG 1 cut(s) 809
MvaI CCWGG 1 cut(s) 809
MvnI CGCG 7 cut(s) 356, 382, 430, 452, 552, 570, 746
MwoI GCNNNNNNNGC 4 cut(s) 189, 362, 609, 709
NaeI GCCGGC 2 cut(s) 223, 493
NdeII GATC 5 cut(s) 119, 747, 853, 1014, 1026
NgoMIV GCCGGC 2 cut(s) 221, 491
NlaIV GGNNCC 6 cut(s) 69, 184, 336, 576, 797, 1076
NmeAIII GCCGAG 2 cut(s) 258, 467
NmuCI GTSAC 3 cut(s) 268, 478, 546
NruI TCGCGA 1 cut(s) 746
PceI AGGCCT 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 797
PcsI WCGNNNNNNNCGW 4 cut(s) 45, 225, 285, 366
PdiI GCCGGC 2 cut(s) 223, 493
PflFI GACNNNGTC 2 cut(s) 266, 740
PkrI GCNGC 7 cut(s) 46, 364, 429, 567, 602, 711, 714
PmaCI CACGTG 1 cut(s) 922
PmlI CACGTG 1 cut(s) 922
Ppu21I YACGTR 2 cut(s) 907, 922
Psp6I CCWGG 1 cut(s) 807
PspCI CACGTG 1 cut(s) 922
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 1 cut(s) 807
PspN4I GGNNCC 6 cut(s) 69, 184, 336, 576, 797, 1076
PspPI GGNCC 4 cut(s) 67, 334, 425, 574
PstNI CAGNNNCTG 1 cut(s) 597
PsuI RGATCY 1 cut(s) 1014
PsyI GACNNNGTC 2 cut(s) 266, 740
RruI TCGCGA 1 cut(s) 746
RsaI GTAC 2 cut(s) 590, 905
RsaNI GTAC 2 cut(s) 589, 904
RseI CAYNNNNRTG 2 cut(s) 62, 329
SalI GTCGAC 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 797
SaqAI TTAA 2 cut(s) 29, 725
SatI GCNGC 7 cut(s) 45, 363, 428, 566, 601, 710, 713
Sau3AI GATC 5 cut(s) 119, 747, 853, 1014, 1026
Sau96I GGNCC 4 cut(s) 67, 334, 425, 574
ScrFI CCNGG 1 cut(s) 809
SduI GDGCHC 1 cut(s) 921
SfaNI GCATC 2 cut(s) 23, 330
SgrAI CRCCGGYG 1 cut(s) 221
SinI GGWCC 2 cut(s) 334, 574
SmiMI CAYNNNNRTG 2 cut(s) 62, 329
Sse9I AATT 6 cut(s) 112, 347, 727, 831, 843, 1105
SseBI AGGCCT 1 cut(s) 144
StuI AGGCCT 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 807
TaaI ACNGT 5 cut(s) 274, 593, 792, 815, 1007
TaiI ACGT 5 cut(s) 270, 450, 480, 909, 924
TaqI TCGA 3 cut(s) 231, 291, 653
TasI AATT 6 cut(s) 112, 347, 727, 831, 843, 1105
TauI GCSGC 3 cut(s) 47, 430, 603
Tru1I TTAA 2 cut(s) 29, 725
Tru9I TTAA 2 cut(s) 29, 725
TscAI CASTG 2 cut(s) 331, 795
TseFI GTSAC 3 cut(s) 268, 478, 546
TseI GCWGC 4 cut(s) 362, 565, 709, 712
Tsp45I GTSAC 3 cut(s) 268, 478, 546
TspDTI ATGAA 1 cut(s) 163
TspRI CASTG 2 cut(s) 331, 795
Tth111I GACNNNGTC 2 cut(s) 266, 740
VpaK11BI GGWCC 2 cut(s) 334, 574
XapI RAATTY 2 cut(s) 727, 831
XmiI GTMKAC 1 cut(s) 291
ZraI GACGTC 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.