Rmu_co8419081.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8419081.1
OG0016107
Physical Location & Seq
Forward (+)
544 .. 1397
854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8419081.1_g000001.1.cds

Sequence Viewer

Length: 854 bp
atgacttgttcaatcgcctcctccgtccttgttgttttcattttactgagctcaatcccgatccaaacccaagcaagcaagcctcacgtcatcaatttccgatccccaaatctctaccccgaaggcctcgcctacgacccctccgcccagcacttcatcgtcggcgccatccgccagcgcaccatctactccgtctccgacgccggcgtaaccgaccttctcatctccgaccccactctccccgaaaacgtcaccttcctcggcctcgccgtcgacgccgtcaacaaccgcctcctcgccgccgtccaagccggggagccgctccctcacttcagcgccctcgccgcctacgacctccgcacgcgccgccgcctcttcctcacgcccctcccctccgccgacggcgacgcctcccgccagatcgccaacgacgtcgccgtggatttcaagggcaacgcctacgtcaccaactcggcggcgaacttcatctggaaagtcaactccgacggcgcggcctccgtcctctccaagtccccgctattctcggcgcatcctgtggaccccgactggccctatagcttctgcggcctcaacggcattgcttacgtcagcaaggggtatctactggtggtgcaatccaacaccggcaagctgttcaaggtggacgcggaggacggaaccgccagggtggtgctgctgccggaggacttgcctctggccgacgggattgctgtccgacgagacgggaccgttgtggtggtttccatgaataaaatgtggtttcttaagagccaagacagctggggagagggtgtggtttatgacaagacggagcttgaagtggagaggtttcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SGL

Protein Analysis

285

Amino Acids

30.87

Weight (kDa)

5.22

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01410
fragaria_vesca FvH4_4g32390
malus_domestica MD16G1028500.v1.1
prunus_persica Prupe.1G324200_v2.0.a1
pyrus_communis pycom16g02440
rosa_laevigata RLG00000006110
rosa_multiflora Rmu_co8419081.1_g000001
rosa_roxburghii Rroxscaffold_5G00382130
rosa_rugosa Rorug04G0331600 Rorug07G0286600
rosa_samantha Rh4AG383400 Rh4BG397500 Rh4CG412700 Rh4DG390200
rosa_wichuraiana Rw4G033080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 164
AccBSI CCGCTC 1 cut(s) 322
AccI GTMKAC 1 cut(s) 273
AccII CGCG 3 cut(s) 364, 512, 668
AclWI GGATC 2 cut(s) 55, 96
AcoI YGGCCR 1 cut(s) 717
AcuI CTGAAG 1 cut(s) 316
AcyI GRCGYC 5 cut(s) 165, 201, 276, 408, 432
AfiI CCNNNNNNNGG 1 cut(s) 313
AflII CTTAAG 1 cut(s) 785
AgsI TTSAA 4 cut(s) 12, 448, 658, 839
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 1 cut(s) 683
AluBI AGCT 5 cut(s) 51, 579, 652, 801, 835
AluI AGCT 5 cut(s) 51, 579, 652, 801, 835
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 2 cut(s) 199, 735
AlwI GGATC 2 cut(s) 55, 96
AoxI GGCC 6 cut(s) 124, 262, 513, 569, 586, 717
ApeKI GCWGC 2 cut(s) 694, 697
AspLEI GCGC 6 cut(s) 167, 180, 338, 366, 512, 550
AspS9I GGNCC 3 cut(s) 559, 570, 747
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 244, 457
AvaII GGWCC 2 cut(s) 559, 747
BanI GGYRCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 53
BarI GAAGNNNNNNTAC 2 cut(s) 201, 233
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 681, 684
BccI CCATC 2 cut(s) 176, 191
BceAI ACGGC 7 cut(s) 254, 263, 287, 418, 422, 523, 610
BcgI CGANNNNNNTGC 2 cut(s) 710, 744
BciT130I CCWGG 1 cut(s) 685
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 199, 735
BfmI CTRYAG 1 cut(s) 574
BfoI RGCGCY 2 cut(s) 168, 339
BfrI CTTAAG 1 cut(s) 785
BglI GCCNNNNNGGC 1 cut(s) 594
Bme1390I CCNGG 2 cut(s) 313, 685
Bme18I GGWCC 2 cut(s) 559, 747
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 3 cut(s) 559, 570, 747
BmiI GGNNCC 5 cut(s) 166, 318, 561, 679, 748
BmrFI CCNGG 2 cut(s) 313, 685
BmsI GCATC 1 cut(s) 559
BpuMI CCSGG 1 cut(s) 313
BsaHI GRCGYC 5 cut(s) 165, 201, 276, 408, 432
BsaJI CCNNGG 4 cut(s) 259, 312, 438, 684
BsaXI ACNNNNNCTCC 6 cut(s) 125, 155, 179, 209, 798, 828
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse118I RCCGGY 2 cut(s) 203, 644
Bse1I ACTGG 2 cut(s) 572, 630
Bse3DI GCAATG 1 cut(s) 597
BseBI CCWGG 1 cut(s) 685
BseDI CCNNGG 4 cut(s) 259, 312, 438, 684
BseGI GGATG 2 cut(s) 168, 550
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 2 cut(s) 572, 630
BseRI GAGGAG 2 cut(s) 10, 284
BseXI GCAGC 2 cut(s) 681, 684
BseYI CCCAGC 2 cut(s) 147, 801
Bsh1236I CGCG 3 cut(s) 364, 512, 668
BshFI GGCC 6 cut(s) 126, 264, 515, 571, 588, 719
BshNI GGYRCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 4 cut(s) 204, 312, 645, 701
BslFI GGGAC 2 cut(s) 517, 760
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 2 cut(s) 199, 735
BsmBI CGTCTC 2 cut(s) 199, 735
BsmFI GGGAC 2 cut(s) 517, 760
BsnI GGCC 6 cut(s) 126, 264, 515, 571, 588, 719
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 3 cut(s) 60, 101, 420
BspANI GGCC 6 cut(s) 126, 264, 515, 571, 588, 719
BspCNI CTCAG 1 cut(s) 39
BspFNI CGCG 3 cut(s) 364, 512, 668
BspLI GGNNCC 5 cut(s) 166, 318, 561, 679, 748
BspPI GGATC 2 cut(s) 55, 96
BspT107I GGYRCC 1 cut(s) 164
BspTI CTTAAG 1 cut(s) 785
BsrBI CCGCTC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 597
BsrFI RCCGGY 2 cut(s) 203, 644
BsrI ACTGG 2 cut(s) 572, 630
BssAI RCCGGY 2 cut(s) 203, 644
BssECI CCNNGG 4 cut(s) 259, 312, 438, 684
BssMI GATC 3 cut(s) 60, 101, 420
BssNI GRCGYC 5 cut(s) 165, 201, 276, 408, 432
Bst2UI CCWGG 1 cut(s) 685
Bst4CI ACNGT 1 cut(s) 751
Bst6I CTCTTC 1 cut(s) 380
BstACI GRCGYC 5 cut(s) 165, 201, 276, 408, 432
BstAFI CTTAAG 1 cut(s) 785
BstC8I GCNNGC 6 cut(s) 76, 80, 176, 205, 362, 650
BstDEI CTNAG 1 cut(s) 47
BstDSI CCRYGG 1 cut(s) 438
BstF5I GGATG 2 cut(s) 168, 550
BstFNI CGCG 3 cut(s) 364, 512, 668
BstH2I RGCGCY 2 cut(s) 168, 339
BstHHI GCGC 6 cut(s) 167, 180, 338, 366, 512, 550
BstKTI GATC 3 cut(s) 63, 104, 423
BstMAI GTCTC 2 cut(s) 199, 735
BstMBI GATC 3 cut(s) 60, 101, 420
BstMWI GCNNNNNNNGC 8 cut(s) 171, 275, 308, 344, 366, 585, 594, 798
BstNI CCWGG 1 cut(s) 685
BstSCI CCNGG 2 cut(s) 311, 683
BstSFI CTRYAG 1 cut(s) 574
BstUI CGCG 3 cut(s) 364, 512, 668
BstV1I GCAGC 2 cut(s) 681, 684
BsuRI GGCC 6 cut(s) 126, 264, 515, 571, 588, 719
BtgI CCRYGG 1 cut(s) 438
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 168, 550
Cac8I GCNNGC 6 cut(s) 76, 80, 176, 205, 362, 650
CfoI GCGC 6 cut(s) 167, 180, 338, 366, 512, 550
Cfr10I RCCGGY 2 cut(s) 203, 644
Cfr13I GGNCC 3 cut(s) 559, 570, 747
CseI GACGC 4 cut(s) 209, 284, 416, 674
CviAII CATG 1 cut(s) 766
DdeI CTNAG 1 cut(s) 47
DinI GGCGCC 1 cut(s) 166
DpnI GATC 3 cut(s) 62, 103, 422
DpnII GATC 3 cut(s) 60, 101, 420
EaeI YGGCCR 1 cut(s) 717
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
EciI GGCGGA 3 cut(s) 133, 161, 385
Ecl136II GAGCTC 1 cut(s) 51
Eco147I AGGCCT 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 53
Eco47I GGWCC 2 cut(s) 559, 747
Eco53kI GAGCTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 316
EcoICRI GAGCTC 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 683
EcoT38I GRGCYC 1 cut(s) 53
EgeI GGCGCC 1 cut(s) 166
EheI GGCGCC 1 cut(s) 166
Esp3I CGTCTC 2 cut(s) 199, 735
FaeI CATG 1 cut(s) 769
FaiI YATR 3 cut(s) 576, 767, 822
FaqI GGGAC 2 cut(s) 517, 760
FatI CATG 1 cut(s) 765
FauI CCCGC 2 cut(s) 422, 543
FblI GTMKAC 1 cut(s) 273
FokI GGATG 2 cut(s) 155, 537
FriOI GRGCYC 1 cut(s) 53
GlaI GCGC 6 cut(s) 166, 179, 337, 365, 511, 549
GsaI CCCAGC 2 cut(s) 151, 805
HaeII RGCGCY 2 cut(s) 168, 339
HaeIII GGCC 6 cut(s) 126, 264, 515, 571, 588, 719
HapII CCGG 4 cut(s) 204, 312, 645, 701
HgaI GACGC 4 cut(s) 209, 284, 416, 674
HhaI GCGC 6 cut(s) 167, 180, 338, 366, 512, 550
Hin1I GRCGYC 5 cut(s) 165, 201, 276, 408, 432
Hin1II CATG 1 cut(s) 769
Hin6I GCGC 6 cut(s) 165, 178, 336, 364, 510, 548
HinP1I GCGC 6 cut(s) 165, 178, 336, 364, 510, 548
HincII GTYRAC 3 cut(s) 274, 283, 499
HindII GTYRAC 3 cut(s) 274, 283, 499
HpaII CCGG 4 cut(s) 204, 312, 645, 701
HphI GGTGA 2 cut(s) 244, 457
Hpy166II GTNNAC 5 cut(s) 274, 283, 499, 559, 664
Hpy188I TCNGA 5 cut(s) 101, 199, 229, 505, 737
Hpy188III TCNNGA 2 cut(s) 58, 490
Hpy8I GTNNAC 5 cut(s) 274, 283, 499, 559, 664
HpyAV CCTTC 3 cut(s) 116, 227, 265
HpyCH4III ACNGT 1 cut(s) 751
HpyCH4IV ACGT 5 cut(s) 87, 249, 432, 462, 606
HpyCH4V TGCA 1 cut(s) 634
HpyF10VI GCNNNNNNNGC 8 cut(s) 171, 275, 308, 344, 366, 585, 594, 798
HpyF3I CTNAG 1 cut(s) 47
HpySE526I ACGT 5 cut(s) 87, 249, 432, 462, 606
Hsp92I GRCGYC 5 cut(s) 165, 201, 276, 408, 432
Hsp92II CATG 1 cut(s) 769
HspAI GCGC 6 cut(s) 165, 178, 336, 364, 510, 548
KasI GGCGCC 1 cut(s) 164
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Kzo9I GATC 3 cut(s) 60, 101, 420
LmnI GCTCC 3 cut(s) 316, 327, 832
Lsp1109I GCAGC 2 cut(s) 681, 684
LweI GCATC 1 cut(s) 559
MaeII ACGT 5 cut(s) 87, 249, 432, 462, 606
MaeIII GTNAC 3 cut(s) 208, 250, 463
MalI GATC 3 cut(s) 62, 103, 422
MbiI CCGCTC 1 cut(s) 322
MboI GATC 3 cut(s) 60, 101, 420
MboII GAAGA 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 1 cut(s) 94
Mly113I GGCGCC 1 cut(s) 165
MmeI TCCRAC 5 cut(s) 222, 252, 528, 663, 760
MreI CGCCGGCG 1 cut(s) 203
MroNI GCCGGC 1 cut(s) 203
MseI TTAA 1 cut(s) 786
MspA1I CMGCKG 1 cut(s) 801
MspCI CTTAAG 1 cut(s) 785
MspI CCGG 4 cut(s) 204, 312, 645, 701
MspR9I CCNGG 2 cut(s) 313, 685
MvaI CCWGG 1 cut(s) 685
MvnI CGCG 3 cut(s) 364, 512, 668
MwoI GCNNNNNNNGC 8 cut(s) 171, 275, 308, 344, 366, 585, 594, 798
NaeI GCCGGC 1 cut(s) 205
NarI GGCGCC 1 cut(s) 165
NciI CCSGG 1 cut(s) 313
NdeII GATC 3 cut(s) 60, 101, 420
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 1 cut(s) 769
NlaIV GGNNCC 5 cut(s) 166, 318, 561, 679, 748
NmeAIII GCCGAG 3 cut(s) 240, 452, 524
NmuCI GTSAC 2 cut(s) 250, 463
PceI AGGCCT 1 cut(s) 126
PcsI WCGNNNNNNNCGW 5 cut(s) 21, 267, 348, 429, 435
PdiI GCCGGC 1 cut(s) 205
PflFI GACNNNGTC 1 cut(s) 278
PluTI GGCGCC 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 683
PspFI CCCAGC 2 cut(s) 147, 801
PspGI CCWGG 1 cut(s) 683
PspN4I GGNNCC 5 cut(s) 166, 318, 561, 679, 748
PspPI GGNCC 3 cut(s) 559, 570, 747
PsyI GACNNNGTC 1 cut(s) 278
PvuII CAGCTG 1 cut(s) 801
SacI GAGCTC 1 cut(s) 53
SalI GTCGAC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 786
Sau3AI GATC 3 cut(s) 60, 101, 420
Sau96I GGNCC 3 cut(s) 559, 570, 747
ScrFI CCNGG 2 cut(s) 313, 685
SduI GDGCHC 1 cut(s) 53
SfaNI GCATC 1 cut(s) 559
SfcI CTRYAG 1 cut(s) 574
SfoI GGCGCC 1 cut(s) 166
SgrAI CRCCGGYG 1 cut(s) 203
SgrDI CGTCGACG 1 cut(s) 272
SinI GGWCC 2 cut(s) 559, 747
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
Sse9I AATT 1 cut(s) 94
SseBI AGGCCT 1 cut(s) 126
SspDI GGCGCC 1 cut(s) 164
SstI GAGCTC 1 cut(s) 53
StuI AGGCCT 1 cut(s) 126
StyD4I CCNGG 2 cut(s) 311, 683
TaaI ACNGT 1 cut(s) 751
TaiI ACGT 5 cut(s) 90, 252, 435, 465, 609
TaqI TCGA 1 cut(s) 273
TasI AATT 1 cut(s) 94
TauI GCSGC 8 cut(s) 302, 322, 347, 369, 372, 479, 515, 588
Tru1I TTAA 1 cut(s) 786
Tru9I TTAA 1 cut(s) 786
TseFI GTSAC 2 cut(s) 250, 463
TseI GCWGC 2 cut(s) 694, 697
Tsp45I GTSAC 2 cut(s) 250, 463
TspDTI ATGAA 4 cut(s) 28, 145, 475, 782
TspGWI ACGGA 5 cut(s) 13, 181, 508, 690, 845
Tth111I GACNNNGTC 1 cut(s) 278
Vha464I CTTAAG 1 cut(s) 785
VpaK11BI GGWCC 2 cut(s) 559, 747
XmiI GTMKAC 1 cut(s) 273
ZraI GACGTC 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.