Prupe.1G324200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016107
Physical Location & Seq
Reverse (-)
30948486 .. 30949995
1510 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G324200.1

Sequence Viewer

Length: 1116 bp
ATGCCTCCAATCGCATCCAGACCATCGTTTCTCTCCTTCATTGTCATCGTCCTCACCATCTTGCTGGGCCCAATCCCAACCCTAACCCAAGCCGGAAAGCCCCACCACATCAATTTCCGATCCCCAAACCTCTACCCAGAAGGCGTCACCTATGATCCATCCGCCCAGCACTTCATTGTCGGCTCCCTCCACCATCGCATCATAGTCTCCGTCTCCGACGCCGGCATCGCCGACACCCTAATCTCCGACCCTACCCTCCCCGAAAACGTCTCCGTTGTCGGCCTCACCGTCGACTCCGTCAACAACCGCCTCCTCGCCAATATTCACGCCCTGGCCCCGCTCCCCGAATTCAACGCCCTCGCTGCCTATGACCTCCGCACGCGCCAACGCCTCTTCCTTTCCCCTCTCCCCTCAGATGACGTCAGCGACGGGACACGTCAGATTGCGAACGACGTCGCGATGGACTTCAAGGGCAACGCCTACGTCACCAACTCGGCCGGCAACTTCATCTGGAAGGTCAACGCCCAAGGGGAGGCCTCTATCTTCTCCAAGTCTCGGGCGTTCACTGCGCAGCCCGTGGACCGAGACCTACCGTATAGTTTCTGCGGCCTAAACGGCGTAGCTTATAACAGTAAGGGGTATCTTTTGGTGGTGCAATCGAATACGGGCAAGATGTTCAAGGTGGACGCGGAGGACGGGACGGCGAGGCTGGTGCTGCTGCCGGAGGACATGCATTTCGCCGACGGGATCGCGATCAGAAGCGACGGCGTCGTTTTGGTGGTGTCCCATAAGACGCTATGGTTCTTGAAGAGCCAGGACAGTTGGGGGGAGGGTGCGGTTTATGACAAAATTGACCTCGACCCCAAGGGTTTTCCTACTTCGGTGGCGGTCGGGGCGGAGGACAGGGCGTATGTGCTGCGTGGGCACGTCATGGAGGGTATGACGGGAAATGTGGAGAGGGAGGAGTTTAGCATTGCGGAGGTGAGATCGGTGAAGGAGAGCAAGGAAGAGAGTGTTTGGATTTTCGTTTTGATCGGCTTGGGATTAGCTTATTTCTTGTTTTGGAGGTTTCAGATGCGCCAGCTTGTTGGCAATTTGAACAAAAAGACCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SGL

Protein Analysis

372

Amino Acids

40.75

Weight (kDa)

5.86

Isoelectric Point (pI)

31.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01410
fragaria_vesca FvH4_4g32390
malus_domestica MD16G1028500.v1.1
prunus_persica Prupe.1G324200_v2.0.a1
pyrus_communis pycom16g02440
rosa_laevigata RLG00000006110
rosa_multiflora Rmu_co8419081.1_g000001
rosa_roxburghii Rroxscaffold_5G00382130
rosa_rugosa Rorug04G0331600 Rorug07G0286600
rosa_samantha Rh4AG383400 Rh4BG397500 Rh4CG412700 Rh4DG390200
rosa_wichuraiana Rw4G033080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 627
AatII GACGTC 2 cut(s) 423, 456
Acc16I TGCGCA 1 cut(s) 570
AccBSI CCGCTC 1 cut(s) 340
AccI GTMKAC 1 cut(s) 291
AccII CGCG 4 cut(s) 382, 458, 689, 752
AclWI GGATC 3 cut(s) 114, 149, 755
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 1 cut(s) 347
AcyI GRCGYC 5 cut(s) 144, 219, 420, 453, 768
AfiI CCNNNNNNNGG 2 cut(s) 532, 555
AflIII ACRYGT 1 cut(s) 434
AgsI TTSAA 5 cut(s) 352, 469, 679, 808, 1099
AjiI CACGTC 2 cut(s) 437, 928
AjnI CCWGG 2 cut(s) 330, 813
AluBI AGCT 3 cut(s) 623, 1049, 1084
AluI AGCT 3 cut(s) 623, 1049, 1084
Alw26I GTCTC 5 cut(s) 211, 217, 274, 558, 579
AlwI GGATC 3 cut(s) 114, 149, 755
Ama87I CYCGRG 1 cut(s) 555
AoxI GGCC 6 cut(s) 67, 280, 333, 495, 534, 607
ApaI GGGCCC 1 cut(s) 71
ApeKI GCWGC 5 cut(s) 362, 571, 715, 718, 916
ApoI RAATTY 1 cut(s) 347
ArsI GACNNNNNNTTYG 2 cut(s) 719, 751
AspLEI GCGC 3 cut(s) 384, 571, 1080
AspS9I GGNCC 4 cut(s) 67, 68, 334, 580
AsuHPI GGTGA 6 cut(s) 46, 139, 277, 478, 994, 1003
AvaI CYCGRG 1 cut(s) 555
AvaII GGWCC 1 cut(s) 580
BaeGI GKGCMC 2 cut(s) 71, 927
BanII GRGCYC 1 cut(s) 71
BbvI GCAGC 5 cut(s) 349, 583, 702, 705, 903
BccI CCATC 5 cut(s) 31, 65, 166, 201, 454
BceAI ACGGC 3 cut(s) 631, 717, 781
BcgI CGANNNNNNTGC 2 cut(s) 694, 728
BciT130I CCWGG 2 cut(s) 332, 815
BcoDI GTCTC 5 cut(s) 211, 217, 274, 558, 579
BglI GCCNNNNNGGC 1 cut(s) 615
BisI GCNGC 6 cut(s) 363, 572, 607, 716, 719, 917
BlsI GCNGC 6 cut(s) 364, 573, 608, 717, 720, 918
Bme1390I CCNGG 2 cut(s) 332, 815
Bme18I GGWCC 1 cut(s) 580
BmeT110I CYCGRG 1 cut(s) 555
BmgBI CACGTC 2 cut(s) 437, 928
BmgT120I GGNCC 4 cut(s) 67, 68, 334, 580
BmiI GGNNCC 3 cut(s) 69, 184, 336
BmrFI CCNGG 2 cut(s) 332, 815
BmsI GCATC 4 cut(s) 23, 207, 234, 1065
BsaBI GATNNNNATC 1 cut(s) 752
BsaHI GRCGYC 5 cut(s) 144, 219, 420, 453, 768
BsaI GGTCTC 1 cut(s) 579
BsaJI CCNNGG 4 cut(s) 330, 526, 576, 864
Bsc4I CCNNNNNNNGG 2 cut(s) 532, 555
Bse118I RCCGGY 2 cut(s) 221, 497
Bse3DI GCAATG 1 cut(s) 972
Bse8I GATNNNNATC 1 cut(s) 752
BseBI CCWGG 2 cut(s) 332, 815
BseDI CCNNGG 4 cut(s) 330, 526, 576, 864
BseGI GGATG 2 cut(s) 14, 158
BseJI GATNNNNATC 1 cut(s) 752
BseLI CCNNNNNNNGG 2 cut(s) 532, 555
BseMI GCAATG 1 cut(s) 972
BseMII CTCAG 1 cut(s) 426
BseRI GAGGAG 2 cut(s) 302, 977
BseSI GKGCMC 2 cut(s) 71, 927
BseX3I CGGCCG 1 cut(s) 495
BseXI GCAGC 5 cut(s) 349, 583, 702, 705, 903
BseYI CCCAGC 2 cut(s) 64, 165
Bsh1236I CGCG 4 cut(s) 382, 458, 689, 752
Bsh1285I CGRYCG 2 cut(s) 498, 891
BshFI GGCC 6 cut(s) 69, 282, 335, 497, 536, 609
BsiEI CGRYCG 2 cut(s) 498, 891
BsiHKCI CYCGRG 1 cut(s) 555
BsiSI CCGG 4 cut(s) 93, 222, 498, 722
BslFI GGGAC 3 cut(s) 445, 712, 769
BslI CCNNNNNNNGG 2 cut(s) 532, 555
BsmAI GTCTC 5 cut(s) 211, 217, 274, 558, 579
BsmBI CGTCTC 2 cut(s) 217, 274
BsmFI GGGAC 3 cut(s) 445, 712, 769
BsnI GGCC 6 cut(s) 69, 282, 335, 497, 536, 609
Bso31I GGTCTC 1 cut(s) 579
BsoBI CYCGRG 1 cut(s) 555
Bsp120I GGGCCC 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 71, 927
Bsp143I GATC 6 cut(s) 119, 154, 747, 753, 986, 1032
Bsp68I TCGCGA 2 cut(s) 458, 752
BspANI GGCC 6 cut(s) 69, 282, 335, 497, 536, 609
BspCNI CTCAG 1 cut(s) 425
BspFNI CGCG 4 cut(s) 382, 458, 689, 752
BspLI GGNNCC 3 cut(s) 69, 184, 336
BspPI GGATC 3 cut(s) 114, 149, 755
BspQI GCTCTTC 1 cut(s) 803
BspTNI GGTCTC 1 cut(s) 579
BsrBI CCGCTC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 972
BsrFI RCCGGY 2 cut(s) 221, 497
BssAI RCCGGY 2 cut(s) 221, 497
BssECI CCNNGG 4 cut(s) 330, 526, 576, 864
BssMI GATC 6 cut(s) 119, 154, 747, 753, 986, 1032
BssNI GRCGYC 5 cut(s) 144, 219, 420, 453, 768
BssT1I CCWWGG 2 cut(s) 526, 864
Bst2UI CCWGG 2 cut(s) 332, 815
Bst4CI ACNGT 4 cut(s) 289, 594, 632, 821
Bst6I CTCTTC 3 cut(s) 398, 803, 1002
BstACI GRCGYC 5 cut(s) 144, 219, 420, 453, 768
BstC8I GCNNGC 4 cut(s) 223, 380, 499, 1082
BstDEI CTNAG 1 cut(s) 412
BstDSI CCRYGG 1 cut(s) 576
BstF5I GGATG 2 cut(s) 14, 158
BstFNI CGCG 4 cut(s) 382, 458, 689, 752
BstHHI GCGC 3 cut(s) 384, 571, 1080
BstKTI GATC 6 cut(s) 122, 157, 750, 756, 989, 1035
BstMAI GTCTC 5 cut(s) 211, 217, 274, 558, 579
BstMBI GATC 6 cut(s) 119, 154, 747, 753, 986, 1032
BstMCI CGRYCG 2 cut(s) 498, 891
BstMWI GCNNNNNNNGC 7 cut(s) 227, 362, 566, 615, 715, 893, 922
BstNI CCWGG 2 cut(s) 332, 815
BstNSI RCATGY 1 cut(s) 733
BstSCI CCNGG 2 cut(s) 330, 813
BstSLI GKGCMC 2 cut(s) 71, 927
BstUI CGCG 4 cut(s) 382, 458, 689, 752
BstV1I GCAGC 5 cut(s) 349, 583, 702, 705, 903
BstXI CCANNNNNNTGG 2 cut(s) 64, 1088
BstZI CGGCCG 1 cut(s) 495
BsuRI GGCC 6 cut(s) 69, 282, 335, 497, 536, 609
BtgI CCRYGG 1 cut(s) 576
BtgZI GCGATG 3 cut(s) 179, 211, 473
BtrI CACGTC 2 cut(s) 437, 928
BtsCI GGATG 2 cut(s) 14, 158
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 1 cut(s) 564
BtuMI TCGCGA 2 cut(s) 458, 752
Cac8I GCNNGC 4 cut(s) 223, 380, 499, 1082
CfoI GCGC 3 cut(s) 384, 571, 1080
Cfr10I RCCGGY 2 cut(s) 221, 497
Cfr13I GGNCC 4 cut(s) 67, 68, 334, 580
CseI GACGC 5 cut(s) 133, 227, 695, 757, 802
CviAII CATG 2 cut(s) 730, 931
DdeI CTNAG 1 cut(s) 412
DpnI GATC 6 cut(s) 121, 156, 749, 755, 988, 1034
DpnII GATC 6 cut(s) 119, 154, 747, 753, 986, 1032
EaeI YGGCCR 1 cut(s) 495
EagI CGGCCG 1 cut(s) 495
Eam1104I CTCTTC 3 cut(s) 398, 803, 1002
EarI CTCTTC 3 cut(s) 398, 803, 1002
EciI GGCGGA 2 cut(s) 151, 911
EclXI CGGCCG 1 cut(s) 495
Eco130I CCWWGG 2 cut(s) 526, 864
Eco147I AGGCCT 1 cut(s) 536
Eco24I GRGCYC 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 579
Eco47I GGWCC 1 cut(s) 580
Eco52I CGGCCG 1 cut(s) 495
Eco88I CYCGRG 1 cut(s) 555
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 330, 813
EcoT14I CCWWGG 2 cut(s) 526, 864
EcoT22I ATGCAT 1 cut(s) 735
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 2 cut(s) 526, 864
Esp3I CGTCTC 2 cut(s) 217, 274
FaeI CATG 2 cut(s) 733, 934
FaqI GGGAC 3 cut(s) 445, 712, 769
FatI CATG 2 cut(s) 729, 930
FauI CCCGC 1 cut(s) 345
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 6 cut(s) 363, 572, 607, 716, 719, 917
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 6 cut(s) 363, 572, 607, 716, 719, 917
FspI TGCGCA 1 cut(s) 570
GlaI GCGC 3 cut(s) 383, 570, 1079
GluI GCNGC 6 cut(s) 363, 572, 607, 716, 719, 917
GsaI CCCAGC 2 cut(s) 68, 169
HaeIII GGCC 6 cut(s) 69, 282, 335, 497, 536, 609
HapII CCGG 4 cut(s) 93, 222, 498, 722
HgaI GACGC 5 cut(s) 133, 227, 695, 757, 802
HhaI GCGC 3 cut(s) 384, 571, 1080
Hin1I GRCGYC 5 cut(s) 144, 219, 420, 453, 768
Hin1II CATG 2 cut(s) 733, 934
Hin6I GCGC 3 cut(s) 382, 569, 1078
HinP1I GCGC 3 cut(s) 382, 569, 1078
HincII GTYRAC 3 cut(s) 292, 301, 520
HindII GTYRAC 3 cut(s) 292, 301, 520
HinfI GANTC 1 cut(s) 293
HpaII CCGG 4 cut(s) 93, 222, 498, 722
HphI GGTGA 6 cut(s) 46, 139, 277, 478, 994, 1003
Hpy166II GTNNAC 6 cut(s) 292, 301, 520, 564, 580, 685
Hpy188I TCNGA 7 cut(s) 119, 217, 247, 415, 441, 758, 1074
Hpy188III TCNNGA 5 cut(s) 18, 457, 511, 751, 805
Hpy8I GTNNAC 6 cut(s) 292, 301, 520, 564, 580, 685
Hpy99I CGWCG 8 cut(s) 221, 293, 431, 455, 458, 746, 767, 773
HpyAV CCTTC 4 cut(s) 46, 134, 508, 988
HpyCH4III ACNGT 4 cut(s) 289, 594, 632, 821
HpyCH4IV ACGT 6 cut(s) 267, 420, 436, 453, 483, 927
HpyCH4V TGCA 2 cut(s) 655, 733
HpyF10VI GCNNNNNNNGC 7 cut(s) 227, 362, 566, 615, 715, 893, 922
HpyF3I CTNAG 1 cut(s) 412
HpySE526I ACGT 6 cut(s) 267, 420, 436, 453, 483, 927
Hsp92I GRCGYC 5 cut(s) 144, 219, 420, 453, 768
Hsp92II CATG 2 cut(s) 733, 934
HspAI GCGC 3 cut(s) 382, 569, 1078
KroI GCCGGC 2 cut(s) 221, 497
KroNI GCCGGC 2 cut(s) 223, 499
Kzo9I GATC 6 cut(s) 119, 154, 747, 753, 986, 1032
LguI GCTCTTC 1 cut(s) 803
LmnI GCTCC 2 cut(s) 188, 345
Lsp1109I GCAGC 5 cut(s) 349, 583, 702, 705, 903
LweI GCATC 4 cut(s) 23, 207, 234, 1065
MaeII ACGT 6 cut(s) 267, 420, 436, 453, 483, 927
MaeIII GTNAC 2 cut(s) 145, 484
MalI GATC 6 cut(s) 121, 156, 749, 755, 988, 1034
MbiI CCGCTC 1 cut(s) 340
MboI GATC 6 cut(s) 119, 154, 747, 753, 986, 1032
MboII GAAGA 4 cut(s) 385, 535, 820, 1019
MhlI GDGCHC 2 cut(s) 71, 927
MluCI AATT 5 cut(s) 112, 347, 849, 1093, 1111
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 2 cut(s) 240, 270
Mph1103I ATGCAT 1 cut(s) 735
MroNI GCCGGC 2 cut(s) 221, 497
MspI CCGG 4 cut(s) 93, 222, 498, 722
MspR9I CCNGG 2 cut(s) 332, 815
MvaI CCWGG 2 cut(s) 332, 815
MvnI CGCG 4 cut(s) 382, 458, 689, 752
MwoI GCNNNNNNNGC 7 cut(s) 227, 362, 566, 615, 715, 893, 922
NaeI GCCGGC 2 cut(s) 223, 499
NdeII GATC 6 cut(s) 119, 154, 747, 753, 986, 1032
NgoMIV GCCGGC 2 cut(s) 221, 497
NlaIII CATG 2 cut(s) 733, 934
NlaIV GGNNCC 3 cut(s) 69, 184, 336
NmeAIII GCCGAG 1 cut(s) 473
NmuCI GTSAC 2 cut(s) 145, 484
NruI TCGCGA 2 cut(s) 458, 752
NsbI TGCGCA 1 cut(s) 570
NsiI ATGCAT 1 cut(s) 735
NspI RCATGY 1 cut(s) 733
PceI AGGCCT 1 cut(s) 536
PciSI GCTCTTC 1 cut(s) 803
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PdiI GCCGGC 2 cut(s) 223, 499
PflFI GACNNNGTC 2 cut(s) 296, 767
PkrI GCNGC 6 cut(s) 364, 573, 608, 717, 720, 918
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PsiI TTATAA 1 cut(s) 627
Psp6I CCWGG 2 cut(s) 330, 813
PspFI CCCAGC 2 cut(s) 64, 165
PspGI CCWGG 2 cut(s) 330, 813
PspN4I GGNNCC 3 cut(s) 69, 184, 336
PspOMI GGGCCC 1 cut(s) 67
PspPI GGNCC 4 cut(s) 67, 68, 334, 580
PsyI GACNNNGTC 2 cut(s) 296, 767
RruI TCGCGA 2 cut(s) 458, 752
SalI GTCGAC 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 803
SatI GCNGC 6 cut(s) 363, 572, 607, 716, 719, 917
Sau3AI GATC 6 cut(s) 119, 154, 747, 753, 986, 1032
Sau96I GGNCC 4 cut(s) 67, 68, 334, 580
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 2 cut(s) 332, 815
SduI GDGCHC 2 cut(s) 71, 927
SfaNI GCATC 4 cut(s) 23, 207, 234, 1065
SinI GGWCC 1 cut(s) 580
Sse9I AATT 5 cut(s) 112, 347, 849, 1093, 1111
SseBI AGGCCT 1 cut(s) 536
SspI AATATT 1 cut(s) 322
StuI AGGCCT 1 cut(s) 536
StyD4I CCNGG 2 cut(s) 330, 813
StyI CCWWGG 2 cut(s) 526, 864
TaaI ACNGT 4 cut(s) 289, 594, 632, 821
TaiI ACGT 6 cut(s) 270, 423, 439, 456, 486, 930
TaqI TCGA 3 cut(s) 291, 659, 858
TaqII GACCGA 1 cut(s) 597
TasI AATT 5 cut(s) 112, 347, 849, 1093, 1111
TauI GCSGC 1 cut(s) 609
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 2 cut(s) 145, 484
TseI GCWGC 5 cut(s) 362, 571, 715, 718, 916
Tsp45I GTSAC 2 cut(s) 145, 484
TspDTI ATGAA 3 cut(s) 28, 163, 496
TspGWI ACGGA 3 cut(s) 199, 262, 286
TspRI CASTG 1 cut(s) 571
Tth111I GACNNNGTC 2 cut(s) 296, 767
VpaK11BI GGWCC 1 cut(s) 580
XapI RAATTY 1 cut(s) 347
XceI RCATGY 1 cut(s) 733
XmiI GTMKAC 1 cut(s) 291
ZraI GACGTC 2 cut(s) 421, 454
Zsp2I ATGCAT 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.