AT2G01450

Lipopolysaccharide kinase (Kdo/WaaP) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
199491 .. 203126
3636 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01450.2

Sequence Viewer

Length: 1461 bp
ATGTTGGAGAAAGAGTTTTTCACGGAGTATGGTGAAGCAAGTCAATATCAGATCCAAGAAGTTGTTGGCAAAGGAAGCTACGGAGTTGTTGCTTCTGCGGAATGTCCACACACGGGAGGCAAAGTAGCCATCAAGAAGATGACAAATGTGTTTGAACATGTCTCAGATGCTATTCGTATCCTCAGAGAGATCAAGCTTCTCAGGCTTCTTCGACATCCTGATATCGTGGAGATCAAGCATATCATGCTTCCTCCTTGTCGCAAGGAATTCAAAGATATATATGTTGTTTTTGAGTTGATGGAGTCTGATCTTCACCACGTTCTTAAGGTAAATGACGACCTCACTCCTCAGCATCATCAATTCTTCTTGTACCAACTTCTTCGTGGCTTAAAATTCATGCACTCAGCTCATGTGTTCCATAGAGATCTGAAGCCTAAGAACATCCTCGCTAATGCTGATTGCAAAATCAAGATCTGTGATTTAGGACTTGCTCGTGTCTCCTTTACTGATTCCCCTTCTGCTGTGTTTTGGACTGACTACGTTGCTACAAGATGGTACCGTGCGCCAGAGCTCTGTGGTTCCTTCTATTCTAACTACACGCCGGCGATTGACATGTGGAGTGTTGGGTGCATATTTGCAGAGATGCTAACTGGAAAACCTTTGTTTCCTGGCAAAAACGTTGTGCACCAGCTAGAACTCGTGACTGATCTGCTTGGAACTCCGTCGCCGATAACTCTATCCAGGATTCGGAATGAGAAGGCTAGAAAGTATTTGGGAAACATGAGGCGAAAGGATCCTGTACCTTTCACCCATAAATTCCCCAATATCGATCCTGTGGCGCTGAAGTTACTTCAGCGTTTGATCGCTTTTGACCCAAAGGACCGTCCCTCTGCAGAAGAGGCATTGGCTGATCCGTATTTTCAAGGATTGGCAAATGTGGACTATGAACCATCGAGGCAACCTATCTCGAAACTTGAGTTTGAGTTTGAGAGGAGGAAATTGACTCGCGATGACGTGAGGGAACTCATGTACAGAGAGATTTTGGAGTATCATCCACAGATGTTGCAAGAGTATCTACAAGGAGAAGAGAACATAAACTCTCATTTTCTATACCCAAGCGGAGTTGATCAGTTCAAACAAGAGTTTGCCCGACTCGAAGAACACAACGACGATGAAGAGGAACACAACTCCCCACCACATCAGAGAAAGTACACTTCACTCCCTAGAGAACGGGTGTGCTCATCAGAAGACGAAGGTTCTGATTCAGTTCATGCTCAATCGTCTTCAGCTTCAGTGGTGTTTACACCTCCACAGACTCCAAACACAGCAACTGGCTTATCATCACAGAAGGCGTCACAAGTAGACAAAGCAGCAACTCCGGTAAAACGGTCTGCATGTCTAATGAGGAGTGATAGTATCTGTGCTTCAAGATGTGTTGGTGTCTCCTCTGCAGTGTCATAG

Protein Analysis

486

Amino Acids

55.49

Weight (kDa)

6.45

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 16 - 307 4.8e-62 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 17 - 234 1.6e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 555
AccB1I GGYRCC 1 cut(s) 555
AccI GTMKAC 1 cut(s) 1362
AccII CGCG 1 cut(s) 1008
AciI CCGC 2 cut(s) 98, 1119
AclI AACGTT 1 cut(s) 678
AclWI GGATC 5 cut(s) 46, 788, 801, 824, 905
AcsI RAATTY 3 cut(s) 266, 392, 815
AcuI CTGAAG 5 cut(s) 449, 836, 863, 1269, 1275
AcyI GRCGYC 1 cut(s) 1352
AfaI GTAC 5 cut(s) 371, 557, 801, 1031, 1211
AfiI CCNNNNNNNGG 2 cut(s) 113, 747
AflII CTTAAG 1 cut(s) 323
AflIII ACRYGT 2 cut(s) 157, 612
AgsI TTSAA 5 cut(s) 155, 271, 923, 1135, 1428
AjiI CACGTC 1 cut(s) 1015
AjnI CCWGG 2 cut(s) 667, 740
AluBI AGCT 6 cut(s) 78, 196, 407, 571, 691, 1289
AluI AGCT 6 cut(s) 78, 196, 407, 571, 691, 1289
Alw21I GWGCWC 3 cut(s) 573, 687, 1241
Alw26I GTCTC 3 cut(s) 166, 502, 1447
Alw44I GTGCAC 1 cut(s) 683
AlwI GGATC 5 cut(s) 46, 788, 801, 824, 905
AlwNI CAGNNNCTG 1 cut(s) 1331
ApaLI GTGCAC 1 cut(s) 683
ApeKI GCWGC 1 cut(s) 1370
ApoI RAATTY 3 cut(s) 266, 392, 815
Asp718I GGTACC 1 cut(s) 555
AspLEI GCGC 2 cut(s) 565, 841
AspS9I GGNCC 1 cut(s) 880
AsuHPI GGTGA 3 cut(s) 44, 305, 799
AvaII GGWCC 1 cut(s) 880
BaeGI GKGCMC 1 cut(s) 687
BamHI GGATCC 1 cut(s) 793
BanI GGYRCC 1 cut(s) 555
BanII GRGCYC 1 cut(s) 573
BarI GAAGNNNNNNTAC 2 cut(s) 1408, 1440
BauI CACGAG 2 cut(s) 492, 698
BbsI GAAGAC 2 cut(s) 1254, 1275
Bbv12I GWGCWC 3 cut(s) 573, 687, 1241
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 1382
BccI CCATC 4 cut(s) 137, 292, 546, 958
BciT130I CCWGG 2 cut(s) 669, 742
BciVI GTATCC 1 cut(s) 188
BclI TGATCA 1 cut(s) 1126
BcoDI GTCTC 3 cut(s) 166, 502, 1447
BfaI CTAG 3 cut(s) 692, 762, 1224
BfmI CTRYAG 2 cut(s) 891, 1449
BfoI RGCGCY 1 cut(s) 842
BfrI CTTAAG 1 cut(s) 323
BfuI GTATCC 1 cut(s) 188
BglII AGATCT 2 cut(s) 424, 471
BisI GCNGC 1 cut(s) 1371
BlsI GCNGC 1 cut(s) 1372
Bme1390I CCNGG 2 cut(s) 669, 742
Bme18I GGWCC 1 cut(s) 880
BmgBI CACGTC 1 cut(s) 1015
BmgT120I GGNCC 1 cut(s) 880
BmiI GGNNCC 3 cut(s) 557, 580, 795
BmrFI CCNGG 2 cut(s) 669, 742
BmsI GCATC 3 cut(s) 157, 361, 633
BpiI GAAGAC 2 cut(s) 1254, 1275
Bpu10I CCTNAGC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 995
Bsa29I ATCGAT 1 cut(s) 828
BsaHI GRCGYC 1 cut(s) 1352
BsaWI WCCGGW 1 cut(s) 1378
BsaXI ACNNNNNCTCC 5 cut(s) 29, 108, 138, 1399, 1429
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 747
Bse118I RCCGGY 1 cut(s) 601
Bse1I ACTGG 2 cut(s) 655, 1336
BseBI CCWGG 2 cut(s) 669, 742
BseCI ATCGAT 1 cut(s) 828
BseGI GGATG 3 cut(s) 214, 441, 1051
BseLI CCNNNNNNNGG 2 cut(s) 113, 747
BseMII CTCAG 5 cut(s) 177, 196, 214, 362, 417
BseNI ACTGG 2 cut(s) 655, 1336
BseRI GAGGAG 4 cut(s) 336, 1006, 1420, 1435
BseSI GKGCMC 1 cut(s) 687
BseXI GCAGC 1 cut(s) 1382
Bsh1236I CGCG 1 cut(s) 1008
BshNI GGYRCC 1 cut(s) 555
BshVI ATCGAT 1 cut(s) 828
BsiHKAI GWGCWC 3 cut(s) 573, 687, 1241
BsiSI CCGG 2 cut(s) 602, 1379
BslFI GGGAC 1 cut(s) 870
BslI CCNNNNNNNGG 2 cut(s) 113, 747
BsmAI GTCTC 3 cut(s) 166, 502, 1447
BsmFI GGGAC 1 cut(s) 870
Bsp1286I GDGCHC 3 cut(s) 573, 687, 1241
Bsp1407I TGTACA 1 cut(s) 1029
Bsp68I TCGCGA 1 cut(s) 1008
BspACI CCGC 2 cut(s) 98, 1119
BspCNI CTCAG 5 cut(s) 176, 195, 213, 361, 416
BspDI ATCGAT 1 cut(s) 828
BspFNI CGCG 1 cut(s) 1008
BspLI GGNNCC 3 cut(s) 557, 580, 795
BspMAI CTGCAG 2 cut(s) 895, 1453
BspPI GGATC 5 cut(s) 46, 788, 801, 824, 905
BspT107I GGYRCC 1 cut(s) 555
BspTI CTTAAG 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 601
BsrGI TGTACA 1 cut(s) 1029
BsrI ACTGG 2 cut(s) 655, 1336
BssAI RCCGGY 1 cut(s) 601
BssNI GRCGYC 1 cut(s) 1352
BssSI CACGAG 2 cut(s) 492, 698
Bst2BI CACGAG 2 cut(s) 492, 698
Bst2UI CCWGG 2 cut(s) 669, 742
Bst4CI ACNGT 3 cut(s) 560, 884, 1389
Bst6I CTCTTC 3 cut(s) 891, 1080, 1170
BstACI GRCGYC 1 cut(s) 1352
BstAFI CTTAAG 1 cut(s) 323
BstAPI GCANNNNNTGC 1 cut(s) 244
BstAUI TGTACA 1 cut(s) 1029
BstC8I GCNNGC 1 cut(s) 603
BstDEI CTNAG 6 cut(s) 163, 182, 200, 348, 403, 435
BstF5I GGATG 3 cut(s) 214, 441, 1051
BstFNI CGCG 1 cut(s) 1008
BstH2I RGCGCY 1 cut(s) 842
BstHHI GCGC 2 cut(s) 565, 841
BstMAI GTCTC 3 cut(s) 166, 502, 1447
BstMWI GCNNNNNNNGC 4 cut(s) 75, 202, 244, 899
BstNI CCWGG 2 cut(s) 669, 742
BstNSI RCATGY 3 cut(s) 161, 616, 1398
BstSCI CCNGG 2 cut(s) 667, 740
BstSFI CTRYAG 2 cut(s) 891, 1449
BstSLI GKGCMC 1 cut(s) 687
BstUI CGCG 1 cut(s) 1008
BstV1I GCAGC 1 cut(s) 1382
BstV2I GAAGAC 2 cut(s) 1254, 1275
BstX2I RGATCY 4 cut(s) 51, 424, 471, 793
BstYI RGATCY 4 cut(s) 51, 424, 471, 793
Bsu15I ATCGAT 1 cut(s) 828
BsuI GTATCC 1 cut(s) 188
BsuTUI ATCGAT 1 cut(s) 828
BtgZI GCGATG 1 cut(s) 1023
BtrI CACGTC 1 cut(s) 1015
BtsCI GGATG 3 cut(s) 214, 441, 1051
BtsI GCAGTG 1 cut(s) 1458
BtsIMutI CAGTG 2 cut(s) 1299, 1458
BtuMI TCGCGA 1 cut(s) 1008
Cac8I GCNNGC 1 cut(s) 603
CaiI CAGNNNCTG 1 cut(s) 1331
CfoI GCGC 2 cut(s) 565, 841
Cfr10I RCCGGY 1 cut(s) 601
Cfr13I GGNCC 1 cut(s) 880
ClaI ATCGAT 1 cut(s) 828
CseI GACGC 1 cut(s) 1341
Csp6I GTAC 5 cut(s) 370, 556, 800, 1030, 1210
CspCI CAANNNNNGTGG 2 cut(s) 1044, 1079
CviAII CATG 9 cut(s) 158, 244, 397, 410, 613, 781, 1027, 1271, 1395
CviQI GTAC 5 cut(s) 370, 556, 800, 1030, 1210
DdeI CTNAG 6 cut(s) 163, 182, 200, 348, 403, 435
Eam1104I CTCTTC 3 cut(s) 891, 1080, 1170
EarI CTCTTC 3 cut(s) 891, 1080, 1170
Ecl136II GAGCTC 1 cut(s) 571
Eco24I GRGCYC 1 cut(s) 573
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 880
Eco53kI GAGCTC 1 cut(s) 571
Eco57I CTGAAG 5 cut(s) 449, 836, 863, 1269, 1275
EcoICRI GAGCTC 1 cut(s) 571
EcoRI GAATTC 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 667, 740
EcoRV GATATC 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 573
FaeI CATG 9 cut(s) 161, 247, 400, 413, 616, 784, 1030, 1274, 1398
FaqI GGGAC 1 cut(s) 870
FatI CATG 9 cut(s) 157, 243, 396, 409, 612, 780, 1026, 1270, 1394
FbaI TGATCA 1 cut(s) 1126
FblI GTMKAC 1 cut(s) 1362
Fnu4HI GCNGC 1 cut(s) 1371
FokI GGATG 3 cut(s) 201, 428, 1038
FriOI GRGCYC 1 cut(s) 573
Fsp4HI GCNGC 1 cut(s) 1371
FspBI CTAG 3 cut(s) 692, 762, 1224
GlaI GCGC 2 cut(s) 564, 840
GluI GCNGC 1 cut(s) 1371
HaeII RGCGCY 1 cut(s) 842
HapII CCGG 2 cut(s) 602, 1379
HgaI GACGC 1 cut(s) 1341
HhaI GCGC 2 cut(s) 565, 841
Hin1I GRCGYC 1 cut(s) 1352
Hin1II CATG 9 cut(s) 161, 247, 400, 413, 616, 784, 1030, 1274, 1398
Hin6I GCGC 2 cut(s) 563, 839
HinP1I GCGC 2 cut(s) 563, 839
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 7 cut(s) 302, 509, 745, 1003, 1152, 1262, 1315
HpaII CCGG 2 cut(s) 602, 1379
HphI GGTGA 3 cut(s) 44, 305, 799
Hpy166II GTNNAC 6 cut(s) 107, 685, 940, 1212, 1302, 1363
Hpy188I TCNGA 9 cut(s) 51, 166, 185, 307, 429, 750, 1203, 1246, 1261
Hpy188III TCNNGA 7 cut(s) 133, 218, 469, 700, 967, 1007, 1428
Hpy8I GTNNAC 6 cut(s) 107, 685, 940, 1212, 1302, 1363
Hpy99I CGWCG 2 cut(s) 727, 1172
HpyAV CCTTC 5 cut(s) 525, 592, 751, 1247, 1342
HpyCH4III ACNGT 3 cut(s) 560, 884, 1389
HpyCH4IV ACGT 4 cut(s) 318, 540, 678, 1014
HpyCH4V TGCA 9 cut(s) 400, 462, 630, 638, 685, 893, 1066, 1394, 1451
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 202, 244, 899
HpyF3I CTNAG 6 cut(s) 163, 182, 200, 348, 403, 435
HpySE526I ACGT 4 cut(s) 318, 540, 678, 1014
Hsp92I GRCGYC 1 cut(s) 1352
Hsp92II CATG 9 cut(s) 161, 247, 400, 413, 616, 784, 1030, 1274, 1398
HspAI GCGC 2 cut(s) 563, 839
KpnI GGTACC 1 cut(s) 559
KroI GCCGGC 1 cut(s) 601
KroNI GCCGGC 1 cut(s) 603
Ksp22I TGATCA 1 cut(s) 1126
Lsp1109I GCAGC 1 cut(s) 1382
LweI GCATC 3 cut(s) 157, 361, 633
MaeI CTAG 3 cut(s) 692, 762, 1224
MaeII ACGT 4 cut(s) 318, 540, 678, 1014
MaeIII GTNAC 3 cut(s) 700, 846, 1353
MflI RGATCY 4 cut(s) 51, 424, 471, 793
MhlI GDGCHC 3 cut(s) 573, 687, 1241
MluCI AATT 5 cut(s) 266, 359, 392, 815, 998
MlyI GAGTC 4 cut(s) 311, 997, 1146, 1309
MreI CGCCGGCG 1 cut(s) 601
MroNI GCCGGC 1 cut(s) 601
MseI TTAA 2 cut(s) 324, 389
MspCI CTTAAG 1 cut(s) 323
MspI CCGG 2 cut(s) 602, 1379
MspR9I CCNGG 2 cut(s) 669, 742
MvaI CCWGG 2 cut(s) 669, 742
MvnI CGCG 1 cut(s) 1008
MwoI GCNNNNNNNGC 4 cut(s) 75, 202, 244, 899
NaeI GCCGGC 1 cut(s) 603
NgoMIV GCCGGC 1 cut(s) 601
NlaIII CATG 9 cut(s) 161, 247, 400, 413, 616, 784, 1030, 1274, 1398
NlaIV GGNNCC 3 cut(s) 557, 580, 795
NmuCI GTSAC 2 cut(s) 700, 1353
NruI TCGCGA 1 cut(s) 1008
NspI RCATGY 3 cut(s) 161, 616, 1398
PciI ACATGT 2 cut(s) 157, 612
PdiI GCCGGC 1 cut(s) 603
PfeI GAWTC 3 cut(s) 509, 745, 1262
PfoI TCCNGGA 1 cut(s) 740
PkrI GCNGC 1 cut(s) 1372
PleI GAGTC 4 cut(s) 310, 997, 1146, 1309
PpsI GAGTC 4 cut(s) 310, 997, 1146, 1309
PscI ACATGT 2 cut(s) 157, 612
Psp124BI GAGCTC 1 cut(s) 573
Psp1406I AACGTT 1 cut(s) 678
Psp6I CCWGG 2 cut(s) 667, 740
PspGI CCWGG 2 cut(s) 667, 740
PspN4I GGNNCC 3 cut(s) 557, 580, 795
PspPI GGNCC 1 cut(s) 880
PstI CTGCAG 2 cut(s) 895, 1453
PstNI CAGNNNCTG 1 cut(s) 1331
PsuI RGATCY 4 cut(s) 51, 424, 471, 793
RruI TCGCGA 1 cut(s) 1008
RsaI GTAC 5 cut(s) 371, 557, 801, 1031, 1211
RsaNI GTAC 5 cut(s) 370, 556, 800, 1030, 1210
SacI GAGCTC 1 cut(s) 573
SaqAI TTAA 2 cut(s) 324, 389
SatI GCNGC 1 cut(s) 1371
Sau96I GGNCC 1 cut(s) 880
SchI GAGTC 4 cut(s) 311, 997, 1146, 1309
ScrFI CCNGG 2 cut(s) 669, 742
SduI GDGCHC 3 cut(s) 573, 687, 1241
SfaNI GCATC 3 cut(s) 157, 361, 633
SfcI CTRYAG 2 cut(s) 891, 1449
SgrAI CRCCGGYG 1 cut(s) 601
SinI GGWCC 1 cut(s) 880
SmlI CTYRAG 2 cut(s) 323, 974
SmoI CTYRAG 2 cut(s) 323, 974
Sse9I AATT 5 cut(s) 266, 359, 392, 815, 998
SsiI CCGC 2 cut(s) 98, 1119
SspMI CTAG 3 cut(s) 692, 762, 1224
SstI GAGCTC 1 cut(s) 573
StyD4I CCNGG 2 cut(s) 667, 740
TaaI ACNGT 3 cut(s) 560, 884, 1389
TaiI ACGT 4 cut(s) 321, 543, 681, 1017
TaqI TCGA 5 cut(s) 211, 828, 953, 968, 1155
TasI AATT 5 cut(s) 266, 359, 392, 815, 998
TatI WGTACW 2 cut(s) 1029, 1209
TfiI GAWTC 3 cut(s) 509, 745, 1262
Tru1I TTAA 2 cut(s) 324, 389
Tru9I TTAA 2 cut(s) 324, 389
TscAI CASTG 2 cut(s) 1299, 1458
TseFI GTSAC 2 cut(s) 700, 1353
TseI GCWGC 1 cut(s) 1370
Tsp45I GTSAC 2 cut(s) 700, 1353
TspDTI ATGAA 4 cut(s) 385, 960, 1188, 1259
TspGWI ACGGA 4 cut(s) 38, 96, 711, 903
TspRI CASTG 2 cut(s) 1299, 1458
Vha464I CTTAAG 1 cut(s) 323
VneI GTGCAC 1 cut(s) 683
VpaK11BI GGWCC 1 cut(s) 880
XapI RAATTY 3 cut(s) 266, 392, 815
XceI RCATGY 3 cut(s) 161, 616, 1398
XcmI CCANNNNNNNNNTGG 2 cut(s) 62, 380
XmiI GTMKAC 1 cut(s) 1362
XspI CTAG 3 cut(s) 692, 762, 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.