Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007581

Physical Location & Seq

Genomic Coordinates Reverse (-)

65853541 .. 65858404

Gene Structure 4864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG413900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGATTTCTCTTAAAGGTTCTACCTTTTTAGTCCTTGTTCTTCTGTTGGTTTGTAAACTTTATATTGGCATGGATTATGATGGTGATTCTCACTTAGAATTATCAGTTCAAGTGTGCACTTTTCATTTTGTGTCCTGTTACTGCATTAGTTTCTTTTTTGATGGATTACTGATTGTAAGTTCTTCGATTCAGAATATGCTTGACAACGAGTTTTTCACCGAATACGGTGAGGCAAGTCAATATGAGATACAAGAAGTGATTGGCAAAGGTAGCTATGGTGTTGTTGCGTCTGCAGTTGATACTCACACCGGTGAGAAGGTGGCTATTAAGAAAATCAATGATGTCTTTGAGCATGTCTCTGATGCCACTCGCATATTAAGAGAAATTAAGCTCCTTCGGCTACTGCACCACCCTGATATTGTGGACATAAAGCATATAATGCTACCCCCTTGTAGACGAGAGTTCAAGGATATATATGTTGTATTTGAGTTGATGGAATCTGACCTTCACCAAGTTATAAAGGCAAATGATGATCTCACTCCTGAGCATTATCAATTTTTCCTGTACCAGCTTCTTCGAGCTCTCAAGTATATACATACAGGAAATGTTTTCCATCGAGATTTAAAGCCAAAAAATATACTTGCTAATGCAGACTGCAAACTGAAAATCTGTGACTTTGGTCTTGCTCGTCCAGCATTTAGCGATGCCCCATCTACTGTCTTTTGGACTGACTATGTGGCAACTCGATGGTACCGTGCTCCCGAACTTTGTGGTTCCTTTTTCTCCAAGTACACTCCTGCTATTGATATTTGGAGCATAGGGTGTATATTTGCAGAAATGCTAACAGGAAAACCATTGTTTCCTGGGAAAAATGTTGTACATCAATTGGATCTCATTACTGATTTACTTGGCACTCCGTCTATCGAATCTATTGCAAGGATTCGGAACGAAAAGGCCAGAAGATATTTAAGTAATATGAAGATAAAGAAACCAACTCCTCTCTCACAAAAAATGCCTCATGCAGATCCATTGGCTCTTCGTTTACTTGAGCGTTTGCTTGCATTCGATCCTAGAGATCGTATTTCTGCTGAAGAGGCACTATCTGACCCATATTTTTATGGATTGGCAAATAAGGATAATGAACCATCCAAGCAGCCCATTTCAAAGCTTGAGTTTGATTTTGAAAAGAGGAAACTGACAAAAGATGATGTAAGAGAGCTAATTTATAGAGAGCATTCAGATTTTAGAGTATCATCCGAAGATGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

423

Amino Acids

48.54

Weight (kDa)

6.08

Isoelectric Point (pI)

29.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	81 - 372	2.2e-66	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	82 - 291	3.1e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01450 AT2G01450 AT2G01450 AT2G01450
fragaria_vesca	FvH4_4g32501 FvH4_4g32501 FvH4_4g32501 FvH4_4g32501 FvH4_4g32501
malus_domestica	MD13G1024800.v1.1
prunus_persica	Prupe.1G325700_v2.0.a1 Prupe.1G325700_v2.0.a1 Prupe.1G325700_v2.0.a1 Prupe.1G325700_v2.0.a1 Prupe.1G325700_v2.0.a1 Prupe.1G325700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441371
rosa_laevigata	RLG00000006097
rosa_multiflora	Rmu_sc0005516.1_g000005
rosa_rugosa	Rorug04G0332800
rosa_samantha	Rh4AG384800 Rh4BG398800 Rh4CG413900
rosa_wichuraiana	Rw4G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	518
Acc65I	GGTACC	1 cut(s)	750
AccB1I	GGYRCC	1 cut(s)	750
AccI	GTMKAC	1 cut(s)	454
AclWI	GGATC	3 cut(s)	897, 1019, 1061
AcuI	CTGAAG	1 cut(s)	1110
AfaI	GTAC	4 cut(s)	566, 752, 791, 879
AgeI	ACCGGT	1 cut(s)	308
AgsI	TTSAA	4 cut(s)	110, 466, 1164, 1184
AjnI	CCWGG	1 cut(s)	862
AleI	CACNNNNGTG	1 cut(s)	309
AluBI	AGCT	6 cut(s)	273, 391, 571, 581, 1168, 1219
AluI	AGCT	6 cut(s)	273, 391, 571, 581, 1168, 1219
Alw21I	GWGCWC	3 cut(s)	119, 583, 760
Alw26I	GTCTC	1 cut(s)	361
Alw44I	GTGCAC	1 cut(s)	115
AlwI	GGATC	3 cut(s)	897, 1019, 1061
AoxI	GGCC	1 cut(s)	954
ApaLI	GTGCAC	1 cut(s)	115
ApeKI	GCWGC	2 cut(s)	1153, 1265
AsiGI	ACCGGT	1 cut(s)	308
Asp718I	GGTACC	1 cut(s)	750
AsuHPI	GGTGA	5 cut(s)	95, 208, 239, 323, 500
BaeGI	GKGCMC	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	750
BanII	GRGCYC	1 cut(s)	583
Bbv12I	GWGCWC	3 cut(s)	119, 583, 760
BbvI	GCAGC	2 cut(s)	1165, 1252
BccI	CCATC	7 cut(s)	74, 155, 487, 621, 718, 741, 1153
BcgI	CGANNNNNNTGC	3 cut(s)	914, 948, 1247
BciT130I	CCWGG	1 cut(s)	864
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	1071
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	2 cut(s)	1154, 1266
BlsI	GCNGC	2 cut(s)	1155, 1267
Bme1390I	CCNGG	1 cut(s)	864
BmiI	GGNNCC	2 cut(s)	752, 775
BmrFI	CCNGG	1 cut(s)	864
BmsI	GCATC	3 cut(s)	352, 694, 1252
BoxI	GACNNNNGTC	1 cut(s)	678
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
Bpu10I	CCTNAGC	1 cut(s)	543
BpuEI	CTTGAG	3 cut(s)	569, 1067, 1190
BsaJI	CCNNGG	1 cut(s)	863
BsaWI	WCCGGW	1 cut(s)	308
Bse118I	RCCGGY	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	864
BseDI	CCNNGG	1 cut(s)	863
BseGI	GGATG	2 cut(s)	1145, 1253
BseMII	CTCAG	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	987
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	1165, 1252
BsgI	GTGCAG	1 cut(s)	389
BshFI	GGCC	1 cut(s)	956
BshNI	GGYRCC	1 cut(s)	750
BshTI	ACCGGT	1 cut(s)	308
BsiHKAI	GWGCWC	3 cut(s)	119, 583, 760
BsiSI	CCGG	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	361
BsmI	GAATGC	2 cut(s)	1061, 1234
BsnI	GGCC	1 cut(s)	956
Bsp1286I	GDGCHC	3 cut(s)	119, 583, 760
Bsp1407I	TGTACA	1 cut(s)	877
Bsp143I	GATC	5 cut(s)	532, 889, 1024, 1066, 1075
BspANI	GGCC	1 cut(s)	956
BspCNI	CTCAG	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	752, 775
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	3 cut(s)	897, 1019, 1061
BspQI	GCTCTTC	1 cut(s)	1041
BspT107I	GGYRCC	1 cut(s)	750
BsrFI	RCCGGY	1 cut(s)	308
BsrGI	TGTACA	1 cut(s)	877
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	863
BssMI	GATC	5 cut(s)	532, 889, 1024, 1066, 1075
Bst2UI	CCWGG	1 cut(s)	864
Bst4CI	ACNGT	3 cut(s)	227, 718, 755
Bst6I	CTCTTC	2 cut(s)	1041, 1086
BstAPI	GCANNNNNTGC	1 cut(s)	439
BstAUI	TGTACA	1 cut(s)	877
BstC8I	GCNNGC	1 cut(s)	1059
BstDEI	CTNAG	2 cut(s)	94, 543
BstF5I	GGATG	2 cut(s)	1145, 1253
BstKTI	GATC	5 cut(s)	535, 892, 1027, 1069, 1078
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	5 cut(s)	532, 889, 1024, 1066, 1075
BstMWI	GCNNNNNNNGC	5 cut(s)	270, 397, 439, 692, 1094
BstNI	CCWGG	1 cut(s)	864
BstNSI	RCATGY	1 cut(s)	356
BstPAI	GACNNNNGTC	1 cut(s)	678
BstSCI	CCNGG	1 cut(s)	862
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	1165, 1252
BstX2I	RGATCY	2 cut(s)	889, 1024
BstYI	RGATCY	2 cut(s)	889, 1024
BsuRI	GGCC	1 cut(s)	956
BtgZI	GCGATG	1 cut(s)	717
BtsCI	GGATG	2 cut(s)	1145, 1253
Cac8I	GCNNGC	1 cut(s)	1059
Cfr10I	RCCGGY	1 cut(s)	308
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	4 cut(s)	565, 751, 790, 878
CspAI	ACCGGT	1 cut(s)	308
CviAII	CATG	4 cut(s)	70, 353, 1019, 1269
CviQI	GTAC	4 cut(s)	565, 751, 790, 878
DdeI	CTNAG	2 cut(s)	94, 543
DpnI	GATC	5 cut(s)	534, 891, 1026, 1068, 1077
DpnII	GATC	5 cut(s)	532, 889, 1024, 1066, 1075
DraI	TTTAAA	1 cut(s)	624
Eam1104I	CTCTTC	2 cut(s)	1041, 1086
EarI	CTCTTC	2 cut(s)	1041, 1086
Ecl136II	GAGCTC	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	583
Eco53kI	GAGCTC	1 cut(s)	581
Eco57I	CTGAAG	1 cut(s)	1110
EcoICRI	GAGCTC	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	862
EcoT38I	GRGCYC	1 cut(s)	583
FaeI	CATG	4 cut(s)	73, 356, 1022, 1272
FatI	CATG	4 cut(s)	69, 352, 1018, 1268
FblI	GTMKAC	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	1154, 1266
FokI	GGATG	2 cut(s)	1132, 1240
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	2 cut(s)	1154, 1266
FspBI	CTAG	1 cut(s)	1071
GluI	GCNGC	2 cut(s)	1154, 1266
HaeIII	GGCC	1 cut(s)	956
HapII	CCGG	1 cut(s)	309
HgaI	GACGC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	73, 356, 1022, 1272
HindIII	AAGCTT	1 cut(s)	1166
HinfI	GANTC	5 cut(s)	86, 187, 497, 926, 940
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	5 cut(s)	95, 208, 239, 323, 500
Hpy166II	GTNNAC	6 cut(s)	56, 117, 424, 455, 792, 1043
Hpy188I	TCNGA	7 cut(s)	192, 361, 502, 945, 1105, 1240, 1258
Hpy188III	TCNNGA	3 cut(s)	542, 617, 761
Hpy8I	GTNNAC	6 cut(s)	56, 117, 424, 455, 792, 1043
HpyAV	CCTTC	3 cut(s)	310, 404, 515
HpyCH4III	ACNGT	3 cut(s)	227, 718, 755
HpyF10VI	GCNNNNNNNGC	5 cut(s)	270, 397, 439, 692, 1094
HpyF3I	CTNAG	2 cut(s)	94, 543
Hsp92II	CATG	4 cut(s)	73, 356, 1022, 1272
KpnI	GGTACC	1 cut(s)	754
Kzo9I	GATC	5 cut(s)	532, 889, 1024, 1066, 1075
LguI	GCTCTTC	1 cut(s)	1041
LmnI	GCTCC	3 cut(s)	396, 763, 813
Lsp1109I	GCAGC	2 cut(s)	1165, 1252
LweI	GCATC	3 cut(s)	352, 694, 1252
MaeI	CTAG	1 cut(s)	1071
MaeIII	GTNAC	2 cut(s)	137, 671
MalI	GATC	5 cut(s)	534, 891, 1026, 1068, 1077
MboI	GATC	5 cut(s)	532, 889, 1024, 1066, 1075
MboII	GAAGA	8 cut(s)	32, 174, 566, 972, 991, 1028, 1103, 1271
MfeI	CAATTG	1 cut(s)	884
MflI	RGATCY	2 cut(s)	889, 1024
MhlI	GDGCHC	3 cut(s)	119, 583, 760
MluCI	AATT	5 cut(s)	98, 384, 554, 884, 1221
MnlI	CCTC	5 cut(s)	223, 1008, 1026, 1087, 1182
MseI	TTAA	6 cut(s)	12, 327, 377, 387, 623, 968
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	864
MunI	CAATTG	1 cut(s)	884
Mva1269I	GAATGC	2 cut(s)	1061, 1234
MvaI	CCWGG	1 cut(s)	864
MwoI	GCNNNNNNNGC	5 cut(s)	270, 397, 439, 692, 1094
NdeII	GATC	5 cut(s)	532, 889, 1024, 1066, 1075
NlaIII	CATG	4 cut(s)	73, 356, 1022, 1272
NlaIV	GGNNCC	2 cut(s)	752, 775
NmuCI	GTSAC	1 cut(s)	671
NspI	RCATGY	1 cut(s)	356
OliI	CACNNNNGTG	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	1041
PcsI	WCGNNNNNNNCGW	1 cut(s)	751
PctI	GAATGC	2 cut(s)	1061, 1234
PfeI	GAWTC	5 cut(s)	86, 187, 497, 926, 940
PinAI	ACCGGT	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	1155, 1267
PshAI	GACNNNNGTC	1 cut(s)	678
PsiI	TTATAA	1 cut(s)	518
Psp124BI	GAGCTC	1 cut(s)	583
Psp6I	CCWGG	1 cut(s)	862
PspGI	CCWGG	1 cut(s)	862
PspN4I	GGNNCC	2 cut(s)	752, 775
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	2 cut(s)	889, 1024
RsaI	GTAC	4 cut(s)	566, 752, 791, 879
RsaNI	GTAC	4 cut(s)	565, 751, 790, 878
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	583
SapI	GCTCTTC	1 cut(s)	1041
SaqAI	TTAA	6 cut(s)	12, 327, 377, 387, 623, 968
SatI	GCNGC	2 cut(s)	1154, 1266
Sau3AI	GATC	5 cut(s)	532, 889, 1024, 1066, 1075
ScrFI	CCNGG	1 cut(s)	864
SduI	GDGCHC	3 cut(s)	119, 583, 760
SfaNI	GCATC	3 cut(s)	352, 694, 1252
SfcI	CTRYAG	1 cut(s)	291
SgrAI	CRCCGGYG	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	3 cut(s)	584, 1046, 1169
SmoI	CTYRAG	3 cut(s)	584, 1046, 1169
Sse9I	AATT	5 cut(s)	98, 384, 554, 884, 1221
SspMI	CTAG	1 cut(s)	1071
SstI	GAGCTC	1 cut(s)	583
StyD4I	CCNGG	1 cut(s)	862
TaaI	ACNGT	3 cut(s)	227, 718, 755
TaqI	TCGA	6 cut(s)	185, 577, 616, 745, 924, 1065
TasI	AATT	5 cut(s)	98, 384, 554, 884, 1221
TatI	WGTACW	2 cut(s)	789, 877
TfiI	GAWTC	5 cut(s)	86, 187, 497, 926, 940
Tru1I	TTAA	6 cut(s)	12, 327, 377, 387, 623, 968
Tru9I	TTAA	6 cut(s)	12, 327, 377, 387, 623, 968
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	2 cut(s)	1153, 1265
Tsp45I	GTSAC	1 cut(s)	671
TspDTI	ATGAA	3 cut(s)	113, 992, 1155
TspGWI	ACGGA	1 cut(s)	906
VneI	GTGCAC	1 cut(s)	115
XceI	RCATGY	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	454
XspI	CTAG	1 cut(s)	1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.