AT2G01650

UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
284509 .. 286529
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01650.3

Sequence Viewer

Length: 1377 bp
ATGGATGACGTTAAAGATAAGCTAAAGGGATTCATGAAAAAAGTCAATCTCTCTTCTTCTTCCGGCAAATTCAAAGGCCAAGGTCGGGTTCTCGGATCTTCTTCTTCTTCCTCTGCACCACCCGTTAACCCGATTCAGAACCGGTTTAACTCTTCCCAAGCTCCCAATCCGACTCCTAGACCCAAACCCAATCCAAATCCGTTGCCTGAGAAACCCTTATCCTCCTCCGATCAGAAGATTAGTGGGTCAACGAGAAACCCGGATCATGACCCGGTTCGTGCTCCACAAGATGGGTTTGACCCGTACGGTGCTTTCATAACGTCTTCGAACAGATCTCAGAACGGATATTCTCTGAGCATGTTCGAGTGTCCGATTTGTAAAAATCCATTCACGTCAGAGGAAGAAGTCTCTGTTCATGTCGAGAGCTGTCTTGGGGACACTAATGGAGACGAATCTTCATTTGAGAAGGATAATAATGATAACGATAAATCCGAAATGGAGAAACTTGTGGTTGTGTATCTCTCTGGGAAGCCAAGTGAGAGCTCTATTGATGTTTTGCTTAGGTTGTTTAAGAACATAGTGAAAGAACCTGAGAATGCTAAGTTTAGAAAAGTTAGAATGAGTAATGCTAAGATTAAAGAAGCTATTGGTGATGTTGCTGGAGGTGTCGAGCTTCTTGAGTTGGTTGGTTTTGAATTGAAAGAGGAAAATGATGAGATTTGGGCTGTTATGGATGTTCCTAGTGAAGAACAATCTATATTGATCAATAAAGTTGTCGGATATCTAGAAAAGAGAAAGACAGAGAGTTCAGGATCTTCAGCTCAGGTTATGGAACCTGTGGCTCCAAAGAAGATTGATAGAGAGATTCGTGTCTTTTTCTCGGTTTCTGAAAACGTAGCATCGAGAATAGAGGTACCTGATTCGTTCTATAGTCTCTCGGCGGATGAAATAAAGAGAGAAGCGGATTTACGGAGGAAAAAGATTGCGGAGTCACAGCTTTTGATTCCAAGATCTTATAAGGAGAAACAAGCGAAAGCAGCTAGAAAGAGATACAAAAGAAGTATGATAAGAGTGCAGTTTCCTGACGGAGTTGTGCTTCAAGGTGTGTTTGCTCCATGGGAACCTACTTTTGCTCTCTATGAGTTTGTGAGCTCTGCTTTGAAAGAACCAAGTTTGCAGTTTGAGCTTCTGGATCCTGTGCTGGTTAAACGGCGTGTGATTCCACATACTCCAGCCCCGGGACAGAAACCGATAACGTTAGAGGACGAAGAGCTTGTTCCGTCAGCGCTCATCAGGTTCAGACCGATCGAAACAGACTCTCTCGTCTTTACAGGACTCCGCAATGAACTCCTGGAGATCAGTGAACCACTCTCGTGA

Protein Analysis

458

Amino Acids

51.06

Weight (kDa)

5.8

Isoelectric Point (pI)

55.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUB PF09409 180 - 251 7.6e-19 PUB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011213)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1017
AasI GACNNNNNNGTC 1 cut(s) 1322
Acc65I GGTACC 1 cut(s) 913
AccB1I GGYRCC 1 cut(s) 913
AccB7I CCANNNNNTGG 1 cut(s) 290
AciI CCGC 4 cut(s) 941, 962, 986, 1339
AclI AACGTT 1 cut(s) 1256
AclWI GGATC 5 cut(s) 103, 270, 820, 1187, 1200
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 801
AfaI GTAC 2 cut(s) 305, 915
AfeI AGCGCT 1 cut(s) 1287
AfiI CCNNNNNNNGG 3 cut(s) 85, 290, 1238
AgeI ACCGGT 1 cut(s) 141
AgsI TTSAA 5 cut(s) 73, 695, 700, 1100, 1162
AjiI CACGTC 1 cut(s) 393
AjnI CCWGG 1 cut(s) 1350
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AleI CACNNNNGTG 1 cut(s) 1372
Alw21I GWGCWC 3 cut(s) 283, 545, 1154
Alw26I GTCTC 3 cut(s) 412, 441, 938
AlwI GGATC 5 cut(s) 103, 270, 820, 1187, 1200
Ama87I CYCGRG 1 cut(s) 1237
Aor51HI AGCGCT 1 cut(s) 1287
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 1037
ApoI RAATTY 1 cut(s) 68
AsiGI ACCGGT 1 cut(s) 141
Asp718I GGTACC 1 cut(s) 913
AspLEI GCGC 1 cut(s) 1288
AsuC2I CCSGG 4 cut(s) 260, 272, 1238, 1239
AsuHPI GGTGA 1 cut(s) 662
AsuII TTCGAA 1 cut(s) 326
AvaI CYCGRG 1 cut(s) 1237
BamHI GGATCC 1 cut(s) 1192
BanI GGYRCC 1 cut(s) 913
BanII GRGCYC 2 cut(s) 545, 1154
BarI GAAGNNNNNNTAC 2 cut(s) 951, 983
BauI CACGAG 1 cut(s) 1372
BbsI GAAGAC 1 cut(s) 315
Bbv12I GWGCWC 3 cut(s) 283, 545, 1154
BbvI GCAGC 1 cut(s) 1049
BccI CCATC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 1226
BciT130I CCWGG 1 cut(s) 1352
BclI TGATCA 1 cut(s) 762
BcnI CCSGG 4 cut(s) 260, 272, 1238, 1239
BcoDI GTCTC 3 cut(s) 412, 441, 938
BfaI CTAG 4 cut(s) 177, 741, 785, 1041
BfmI CTRYAG 1 cut(s) 928
BfoI RGCGCY 1 cut(s) 1289
BglII AGATCT 2 cut(s) 332, 1010
BisI GCNGC 1 cut(s) 1038
BlsI GCNGC 1 cut(s) 1039
Bme1390I CCNGG 5 cut(s) 260, 272, 1238, 1239, 1352
BmeT110I CYCGRG 1 cut(s) 1237
BmgBI CACGTC 1 cut(s) 393
BmiI GGNNCC 5 cut(s) 834, 843, 915, 1122, 1194
BmrFI CCNGG 5 cut(s) 260, 272, 1238, 1239, 1352
BmsI GCATC 1 cut(s) 908
BpiI GAAGAC 1 cut(s) 315
BpmI CTGGAG 3 cut(s) 681, 1215, 1373
Bpu10I CCTNAGC 2 cut(s) 560, 822
Bpu14I TTCGAA 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 698
BpuMI CCSGG 4 cut(s) 260, 272, 1238, 1239
BsaJI CCNNGG 4 cut(s) 79, 1115, 1236, 1237
BsaWI WCCGGW 1 cut(s) 141
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 290, 1238
Bse118I RCCGGY 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 1348
BseBI CCWGG 1 cut(s) 1352
BseDI CCNNGG 4 cut(s) 79, 1115, 1236, 1237
BseGI GGATG 3 cut(s) 10, 739, 949
BseLI CCNNNNNNNGG 3 cut(s) 85, 290, 1238
BseMI GCAATG 1 cut(s) 1348
BseMII CTCAG 5 cut(s) 198, 344, 350, 582, 836
BseRI GAGGAG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 1049
BsgI GTGCAG 2 cut(s) 99, 1094
Bsh1285I CGRYCG 1 cut(s) 1308
BshFI GGCC 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 913
BshTI ACCGGT 1 cut(s) 141
BsiEI CGRYCG 1 cut(s) 1308
BsiHKAI GWGCWC 3 cut(s) 283, 545, 1154
BsiHKCI CYCGRG 1 cut(s) 1237
BsiSI CCGG 5 cut(s) 63, 142, 260, 272, 1238
BsiWI CGTACG 1 cut(s) 303
BslFI GGGAC 2 cut(s) 449, 1254
BslI CCNNNNNNNGG 3 cut(s) 85, 290, 1238
BsmAI GTCTC 3 cut(s) 412, 441, 938
BsmBI CGTCTC 1 cut(s) 441
BsmFI GGGAC 2 cut(s) 449, 1254
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 1 cut(s) 78
BsoBI CYCGRG 1 cut(s) 1237
Bsp119I TTCGAA 1 cut(s) 326
Bsp1286I GDGCHC 3 cut(s) 283, 545, 1154
Bsp19I CCATGG 1 cut(s) 1115
BspACI CCGC 4 cut(s) 941, 962, 986, 1339
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 5 cut(s) 199, 345, 349, 583, 835
BspHI TCATGA 2 cut(s) 33, 265
BspLI GGNNCC 5 cut(s) 834, 843, 915, 1122, 1194
BspPI GGATC 5 cut(s) 103, 270, 820, 1187, 1200
BspQI GCTCTTC 1 cut(s) 1263
BspT104I TTCGAA 1 cut(s) 326
BspT107I GGYRCC 1 cut(s) 913
BsrDI GCAATG 1 cut(s) 1348
BsrFI RCCGGY 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 4 cut(s) 79, 1115, 1236, 1237
BssSI CACGAG 1 cut(s) 1372
BssT1I CCWWGG 2 cut(s) 79, 1115
Bst2BI CACGAG 1 cut(s) 1372
Bst2UI CCWGG 1 cut(s) 1352
Bst4CI ACNGT 1 cut(s) 308
Bst6I CTCTTC 3 cut(s) 58, 157, 1263
BstBI TTCGAA 1 cut(s) 326
BstDEI CTNAG 8 cut(s) 207, 336, 353, 560, 591, 600, 630, 822
BstDSI CCRYGG 1 cut(s) 1115
BstF5I GGATG 3 cut(s) 10, 739, 949
BstH2I RGCGCY 1 cut(s) 1289
BstHHI GCGC 1 cut(s) 1288
BstMAI GTCTC 3 cut(s) 412, 441, 938
BstMCI CGRYCG 1 cut(s) 1308
BstMWI GCNNNNNNNGC 2 cut(s) 1037, 1183
BstNI CCWGG 1 cut(s) 1352
BstNSI RCATGY 1 cut(s) 361
BstSCI CCNGG 5 cut(s) 258, 270, 1236, 1237, 1350
BstSFI CTRYAG 1 cut(s) 928
BstV1I GCAGC 1 cut(s) 1049
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 5 cut(s) 95, 332, 812, 1010, 1192
BstYI RGATCY 5 cut(s) 95, 332, 812, 1010, 1192
BsuRI GGCC 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 1115
BtrI CACGTC 1 cut(s) 393
BtsCI GGATG 3 cut(s) 10, 739, 949
BtsIMutI CAGTG 1 cut(s) 1366
CciI TCATGA 2 cut(s) 33, 265
CfoI GCGC 1 cut(s) 1288
Cfr10I RCCGGY 1 cut(s) 141
Cfr9I CCCGGG 1 cut(s) 1237
Csp6I GTAC 2 cut(s) 304, 914
CspAI ACCGGT 1 cut(s) 141
CviAII CATG 5 cut(s) 34, 266, 358, 416, 1116
CviQI GTAC 2 cut(s) 304, 914
DdeI CTNAG 8 cut(s) 207, 336, 353, 560, 591, 600, 630, 822
DrdI GACNNNNNNGTC 1 cut(s) 1322
DseDI GACNNNNNNGTC 1 cut(s) 1322
Eam1104I CTCTTC 3 cut(s) 58, 157, 1263
EarI CTCTTC 3 cut(s) 58, 157, 1263
EciI GGCGGA 1 cut(s) 956
Ecl136II GAGCTC 2 cut(s) 543, 1152
Eco130I CCWWGG 2 cut(s) 79, 1115
Eco24I GRGCYC 2 cut(s) 545, 1154
Eco32I GATATC 1 cut(s) 782
Eco47III AGCGCT 1 cut(s) 1287
Eco53kI GAGCTC 2 cut(s) 543, 1152
Eco57I CTGAAG 1 cut(s) 801
Eco88I CYCGRG 1 cut(s) 1237
EcoICRI GAGCTC 2 cut(s) 543, 1152
EcoRII CCWGG 1 cut(s) 1350
EcoRV GATATC 1 cut(s) 782
EcoT14I CCWWGG 2 cut(s) 79, 1115
EcoT38I GRGCYC 2 cut(s) 545, 1154
ErhI CCWWGG 2 cut(s) 79, 1115
Esp3I CGTCTC 1 cut(s) 441
FaeI CATG 5 cut(s) 37, 269, 361, 419, 1119
FaqI GGGAC 2 cut(s) 449, 1254
FatI CATG 5 cut(s) 33, 265, 357, 415, 1115
FbaI TGATCA 1 cut(s) 762
Fnu4HI GCNGC 1 cut(s) 1038
FokI GGATG 3 cut(s) 17, 746, 956
FriOI GRGCYC 2 cut(s) 545, 1154
Fsp4HI GCNGC 1 cut(s) 1038
FspBI CTAG 4 cut(s) 177, 741, 785, 1041
GlaI GCGC 1 cut(s) 1287
GluI GCNGC 1 cut(s) 1038
GsuI CTGGAG 3 cut(s) 681, 1215, 1373
HaeII RGCGCY 1 cut(s) 1289
HaeIII GGCC 1 cut(s) 78
HapII CCGG 5 cut(s) 63, 142, 260, 272, 1238
HhaI GCGC 1 cut(s) 1288
Hin1II CATG 5 cut(s) 37, 269, 361, 419, 1119
Hin6I GCGC 1 cut(s) 1286
HinP1I GCGC 1 cut(s) 1286
HincII GTYRAC 2 cut(s) 127, 249
HindII GTYRAC 2 cut(s) 127, 249
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 5 cut(s) 63, 142, 260, 272, 1238
HphI GGTGA 1 cut(s) 662
Hpy166II GTNNAC 3 cut(s) 127, 249, 1364
Hpy8I GTNNAC 3 cut(s) 127, 249, 1364
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 5 cut(s) 9, 320, 392, 894, 1256
HpyCH4V TGCA 3 cut(s) 116, 1075, 1177
HpyF10VI GCNNNNNNNGC 2 cut(s) 1037, 1183
HpyF3I CTNAG 8 cut(s) 207, 336, 353, 560, 591, 600, 630, 822
HpySE526I ACGT 5 cut(s) 9, 320, 392, 894, 1256
Hsp92II CATG 5 cut(s) 37, 269, 361, 419, 1119
HspAI GCGC 1 cut(s) 1286
KpnI GGTACC 1 cut(s) 917
Ksp22I TGATCA 1 cut(s) 762
KspAI GTTAAC 1 cut(s) 127
LguI GCTCTTC 1 cut(s) 1263
LmnI GCTCC 4 cut(s) 166, 286, 847, 1117
Lsp1109I GCAGC 1 cut(s) 1049
LweI GCATC 1 cut(s) 908
MaeI CTAG 4 cut(s) 177, 741, 785, 1041
MaeII ACGT 5 cut(s) 9, 320, 392, 894, 1256
MaeIII GTNAC 1 cut(s) 990
MflI RGATCY 5 cut(s) 95, 332, 812, 1010, 1192
MhlI GDGCHC 3 cut(s) 283, 545, 1154
MluCI AATT 2 cut(s) 68, 695
MlyI GAGTC 4 cut(s) 166, 998, 1310, 1329
MmeI TCCRAC 2 cut(s) 194, 757
MnlI CCTC 9 cut(s) 121, 232, 235, 391, 656, 697, 904, 966, 1255
MseI TTAA 6 cut(s) 12, 126, 147, 570, 636, 1206
MslI CAYNNNNRTG 1 cut(s) 1372
MspI CCGG 5 cut(s) 63, 142, 260, 272, 1238
MspR9I CCNGG 5 cut(s) 260, 272, 1238, 1239, 1352
Mva1269I GAATGC 1 cut(s) 601
MvaI CCWGG 1 cut(s) 1352
MwoI GCNNNNNNNGC 2 cut(s) 1037, 1183
NciI CCSGG 4 cut(s) 260, 272, 1238, 1239
NcoI CCATGG 1 cut(s) 1115
NlaIII CATG 5 cut(s) 37, 269, 361, 419, 1119
NlaIV GGNNCC 5 cut(s) 834, 843, 915, 1122, 1194
NmeAIII GCCGAG 1 cut(s) 917
NmuCI GTSAC 1 cut(s) 990
NspI RCATGY 1 cut(s) 361
NspV TTCGAA 1 cut(s) 326
OliI CACNNNNGTG 1 cut(s) 1372
PagI TCATGA 2 cut(s) 33, 265
PciSI GCTCTTC 1 cut(s) 1263
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PctI GAATGC 1 cut(s) 601
PfeI GAWTC 7 cut(s) 30, 133, 452, 865, 920, 1003, 1219
Pfl23II CGTACG 1 cut(s) 303
PflMI CCANNNNNTGG 1 cut(s) 290
PfoI TCCNGGA 1 cut(s) 1350
PinAI ACCGGT 1 cut(s) 141
PkrI GCNGC 1 cut(s) 1039
Ple19I CGATCG 1 cut(s) 1308
PleI GAGTC 4 cut(s) 166, 997, 1310, 1329
PpsI GAGTC 4 cut(s) 166, 997, 1310, 1329
PsiI TTATAA 1 cut(s) 1017
Psp124BI GAGCTC 2 cut(s) 545, 1154
Psp1406I AACGTT 1 cut(s) 1256
Psp6I CCWGG 1 cut(s) 1350
PspGI CCWGG 1 cut(s) 1350
PspLI CGTACG 1 cut(s) 303
PspN4I GGNNCC 5 cut(s) 834, 843, 915, 1122, 1194
PsuI RGATCY 5 cut(s) 95, 332, 812, 1010, 1192
PvuI CGATCG 1 cut(s) 1308
RsaI GTAC 2 cut(s) 305, 915
RsaNI GTAC 2 cut(s) 304, 914
RseI CAYNNNNRTG 1 cut(s) 1372
SacI GAGCTC 2 cut(s) 545, 1154
SapI GCTCTTC 1 cut(s) 1263
SaqAI TTAA 6 cut(s) 12, 126, 147, 570, 636, 1206
SatI GCNGC 1 cut(s) 1038
SchI GAGTC 4 cut(s) 166, 998, 1310, 1329
ScrFI CCNGG 5 cut(s) 260, 272, 1238, 1239, 1352
SduI GDGCHC 3 cut(s) 283, 545, 1154
SfaNI GCATC 1 cut(s) 908
SfcI CTRYAG 1 cut(s) 928
SfuI TTCGAA 1 cut(s) 326
SmaI CCCGGG 1 cut(s) 1239
SmiMI CAYNNNNRTG 1 cut(s) 1372
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 2 cut(s) 68, 695
SsiI CCGC 4 cut(s) 941, 962, 986, 1339
SspMI CTAG 4 cut(s) 177, 741, 785, 1041
SstI GAGCTC 2 cut(s) 545, 1154
StyD4I CCNGG 5 cut(s) 258, 270, 1236, 1237, 1350
StyI CCWWGG 2 cut(s) 79, 1115
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 5 cut(s) 12, 323, 395, 897, 1259
TaqI TCGA 6 cut(s) 326, 363, 420, 669, 902, 1308
TaqII GACCGA 1 cut(s) 1318
TasI AATT 2 cut(s) 68, 695
TfiI GAWTC 7 cut(s) 30, 133, 452, 865, 920, 1003, 1219
Tru1I TTAA 6 cut(s) 12, 126, 147, 570, 636, 1206
Tru9I TTAA 6 cut(s) 12, 126, 147, 570, 636, 1206
TscAI CASTG 1 cut(s) 1366
TseFI GTSAC 1 cut(s) 990
TseI GCWGC 1 cut(s) 1037
Tsp45I GTSAC 1 cut(s) 990
TspDTI ATGAA 7 cut(s) 22, 50, 304, 404, 447, 960, 1359
TspGWI ACGGA 5 cut(s) 189, 357, 985, 1101, 1269
TspMI CCCGGG 1 cut(s) 1237
TspRI CASTG 1 cut(s) 1366
Van91I CCANNNNNTGG 1 cut(s) 290
XapI RAATTY 1 cut(s) 68
XbaI TCTAGA 1 cut(s) 784
XceI RCATGY 1 cut(s) 361
XmaI CCCGGG 1 cut(s) 1237
XspI CTAG 4 cut(s) 177, 741, 785, 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.