Prupe.1G331600_v2.0.a1

UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
31416639 .. 31420005
3367 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G331600.2

Sequence Viewer

Length: 1455 bp
ATGGGTGACAAGTTCAAGGAATTCATCAAGAATCCCTTCTCGTCTTCATCCTCTGGTAAATTCAAGGGCCAAGGTAGAGTCTTGGGGTCGTCTTCATCAGGTCCCGCTAATTCGGCCCTCCTCCGCCAATCGCAGGCTCCCCAATCCAAGCCCAAGCCCAACCCCGTTTCAAATTCAAATTCAAATTCTAGTTCATCGGCTGCCTCGCCAAATCCCAAGCCTTCGCCTCAGAAAACACAGAATCTTGATCAGAACAAGCCGGAGTTTTCGAATAATTCCAAGCCTAATCGCAAAGAAAATGGGTTTGATCCATTTGACTCTCTGATCACTCCGGGGAAGAGATCCCAAAATGGGTATACGCTAAATGTCTACGAATGTCCAATCTGCGGCCAATCTTTTAGGTCAGAAGACGAAGTCTCCGTACATGTTGATACCTGTGTTAATACTTCGGTGGACAATAAAAGTGCAGAGGGTCTTGGTGTTTCAGGGTCGGAGGATATCGGGGTTGGGTCGTCTCGGAGTGAATTGGAAGCTCGCATTGGCACCTTTGCCTCAGGAAATCCGGCTACAGGATCGGTGGAGGTTGTTCTTAGGCTGTTGAGGAATATAGTTAAGGAACCGGAGAACGTGAAGTTCAGAAAGATTCGGATGAGTAATCCAAAGATAAGGGAGGCCATTGGTGAGGTTGTGGGAGGCATTGAGTTGCTGGAGTTTGTGGGGTTTGAATTGAAAGAGGAGGAAGGGGAGATGTGGGCAATGATGGAGGTCCCTTCGGAGGAACAAATTAGTTTGATGAAAAATGGAATAGCGTTACTGGAACCACCAAAGGTACAAGAACTTCAAAAGATCGAAAATTCTCCATCAATTGATACACCTAAGGTGGATGAACAGATTGAACCAAAGAAGGTCGACCGCCAGACCAAGGTCTTCTTTTCTGTCTCTGAAAGTGTAGCAGCAAGAATTGAGCTACCAGAATCTTTCTATAACCTGTCAGCTATGGAACTAAAAAGAGAAGCTGAAACGAGAAAGAAGAAGATTGAAGATTCGCAGATGTTGATCCCAAGGTCATACAAGGAAAAGCAGGCAAAAGCTGCTAAAAACAGGTACAGAAGAACTGTTGTCCGGATCCAGTTTCCTGATGGAGTGGTGCTCCAGGGTGTTTTTTCTCCTTGGGAGTCAACTAGCTCTCTATATGAGTATGTGAGCTCGGCATTGAAAGAGCCTAGTTTGGAATTTGAGCTGTTAAATCCTGTAGCTATCAAACGGCGGGTGATCCCTCATTTTCCTAGAGCAGGGGAGAAAGCTGCAACACTAGCTGATGAGGATTTGGTCCCCTCAGCTCTTGTCAAGTTTAAACCTATTGAAACCGATTCTGTTGTTTTCACGGGGCTGTGTAATGAACTCCTTGAGATTAGTGAACCACTTACAAGTGGTTCAGCTGTTGCTCCTGTATAA

Protein Analysis

485

Amino Acids

53.16

Weight (kDa)

6.09

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011213)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 542
AccI GTMKAC 3 cut(s) 356, 369, 909
AccIII TCCGGA 1 cut(s) 1122
AciI CCGC 5 cut(s) 105, 124, 387, 913, 1267
AclWI GGATC 7 cut(s) 302, 336, 580, 1051, 1120, 1133, 1267
AcoI YGGCCR 1 cut(s) 388
AcsI RAATTY 7 cut(s) 20, 59, 172, 178, 184, 853, 1232
AfaI GTAC 3 cut(s) 423, 831, 1106
AfiI CCNNNNNNNGG 7 cut(s) 133, 351, 386, 569, 775, 922, 1292
AflIII ACRYGT 1 cut(s) 424
AjnI CCWGG 1 cut(s) 1152
AjuI GAANNNNNNNTTGG 2 cut(s) 522, 554
Alw21I GWGCWC 2 cut(s) 1152, 1208
Alw26I GTCTC 3 cut(s) 421, 519, 943
AlwI GGATC 7 cut(s) 302, 336, 580, 1051, 1120, 1133, 1267
Aor13HI TCCGGA 1 cut(s) 1122
AoxI GGCC 4 cut(s) 67, 114, 388, 672
ApeKI GCWGC 4 cut(s) 200, 953, 1091, 1304
ApoI RAATTY 7 cut(s) 20, 59, 172, 178, 184, 853, 1232
Asp700I GAANNNNTTC 1 cut(s) 35
AspS9I GGNCC 5 cut(s) 67, 101, 115, 766, 1330
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 3 cut(s) 17, 692, 1282
AsuII TTCGAA 1 cut(s) 269
AvaII GGWCC 3 cut(s) 101, 766, 1330
AxyI CCTNAGG 2 cut(s) 553, 876
BaeI ACNNNNGTAYC 2 cut(s) 423, 456
BamHI GGATCC 1 cut(s) 1125
BanI GGYRCC 1 cut(s) 542
BanII GRGCYC 1 cut(s) 1208
BarI GAAGNNNNNNTAC 4 cut(s) 405, 437, 822, 854
BbsI GAAGAC 4 cut(s) 36, 84, 414, 919
Bbv12I GWGCWC 2 cut(s) 1152, 1208
BbvCI CCTCAGC 1 cut(s) 1336
BbvI GCAGC 4 cut(s) 187, 965, 1078, 1291
BccI CCATC 3 cut(s) 754, 868, 1133
BceAI ACGGC 1 cut(s) 1280
BciT130I CCWGG 1 cut(s) 1154
BclI TGATCA 2 cut(s) 247, 324
BcnI CCSGG 1 cut(s) 333
BcoDI GTCTC 3 cut(s) 421, 519, 943
BfaI CTAG 5 cut(s) 189, 1182, 1224, 1287, 1313
BfmI CTRYAG 2 cut(s) 567, 1251
BisI GCNGC 5 cut(s) 201, 388, 954, 1092, 1305
BlsI GCNGC 5 cut(s) 202, 389, 955, 1093, 1306
Bme1390I CCNGG 2 cut(s) 333, 1154
Bme18I GGWCC 3 cut(s) 101, 766, 1330
BmgT120I GGNCC 5 cut(s) 67, 101, 115, 766, 1330
BmiI GGNNCC 8 cut(s) 103, 138, 544, 618, 768, 819, 1127, 1332
BmrFI CCNGG 2 cut(s) 333, 1154
BoxI GACNNNNGTC 1 cut(s) 923
BpiI GAAGAC 4 cut(s) 36, 84, 414, 919
BplI GAGNNNNNCTC 2 cut(s) 1134, 1166
BpmI CTGGAG 2 cut(s) 728, 1136
Bpu10I CCTNAGC 1 cut(s) 1336
Bpu14I TTCGAA 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 1427
BpuMI CCSGG 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 1055
BsaJI CCNNGG 6 cut(s) 70, 332, 921, 1061, 1153, 1169
BsaWI WCCGGW 2 cut(s) 619, 1122
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 7 cut(s) 133, 351, 386, 569, 775, 922, 1292
Bse1I ACTGG 2 cut(s) 819, 1129
Bse21I CCTNAGG 2 cut(s) 553, 876
Bse3DI GCAATG 1 cut(s) 762
Bse8I GATNNNNATC 1 cut(s) 1055
BseAI TCCGGA 1 cut(s) 1122
BseBI CCWGG 1 cut(s) 1154
BseDI CCNNGG 6 cut(s) 70, 332, 921, 1061, 1153, 1169
BseGI GGATG 3 cut(s) 47, 654, 889
BseJI GATNNNNATC 1 cut(s) 1055
BseLI CCNNNNNNNGG 7 cut(s) 133, 351, 386, 569, 775, 922, 1292
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 3 cut(s) 242, 567, 1350
BseNI ACTGG 2 cut(s) 819, 1129
BseRI GAGGAG 2 cut(s) 110, 749
BseXI GCAGC 4 cut(s) 187, 965, 1078, 1291
BsgI GTGCAG 1 cut(s) 486
Bsh1285I CGRYCG 1 cut(s) 913
BshFI GGCC 4 cut(s) 69, 116, 390, 674
BshNI GGYRCC 1 cut(s) 542
BsiEI CGRYCG 1 cut(s) 913
BsiHKAI GWGCWC 2 cut(s) 1152, 1208
BsiSI CCGG 5 cut(s) 260, 332, 563, 620, 1123
BslFI GGGAC 3 cut(s) 87, 752, 1316
BslI CCNNNNNNNGG 7 cut(s) 133, 351, 386, 569, 775, 922, 1292
BsmAI GTCTC 3 cut(s) 421, 519, 943
BsmBI CGTCTC 1 cut(s) 519
BsmFI GGGAC 3 cut(s) 87, 752, 1316
BsnI GGCC 4 cut(s) 69, 116, 390, 674
Bsp119I TTCGAA 1 cut(s) 269
Bsp1286I GDGCHC 2 cut(s) 1152, 1208
Bsp13I TCCGGA 1 cut(s) 1122
Bsp143I GATC 9 cut(s) 247, 307, 324, 341, 572, 846, 1056, 1125, 1272
BspACI CCGC 5 cut(s) 105, 124, 387, 913, 1267
BspANI GGCC 4 cut(s) 69, 116, 390, 674
BspCNI CTCAG 3 cut(s) 241, 566, 1349
BspEI TCCGGA 1 cut(s) 1122
BspLI GGNNCC 8 cut(s) 103, 138, 544, 618, 768, 819, 1127, 1332
BspPI GGATC 7 cut(s) 302, 336, 580, 1051, 1120, 1133, 1267
BspT104I TTCGAA 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 762
BsrI ACTGG 2 cut(s) 819, 1129
BssECI CCNNGG 6 cut(s) 70, 332, 921, 1061, 1153, 1169
BssMI GATC 9 cut(s) 247, 307, 324, 341, 572, 846, 1056, 1125, 1272
BssNAI GTATAC 1 cut(s) 357
BssT1I CCWWGG 4 cut(s) 70, 921, 1061, 1169
Bst1107I GTATAC 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 1154
Bst4CI ACNGT 1 cut(s) 1117
Bst6I CTCTTC 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 1091
BstBI TTCGAA 1 cut(s) 269
BstC8I GCNNGC 3 cut(s) 135, 535, 1083
BstDEI CTNAG 5 cut(s) 228, 553, 590, 876, 1336
BstENI CCTNNNNNAGG 1 cut(s) 1290
BstF5I GGATG 3 cut(s) 47, 654, 889
BstKTI GATC 9 cut(s) 250, 310, 327, 344, 575, 849, 1059, 1128, 1275
BstMAI GTCTC 3 cut(s) 421, 519, 943
BstMBI GATC 9 cut(s) 247, 307, 324, 341, 572, 846, 1056, 1125, 1272
BstMCI CGRYCG 1 cut(s) 913
BstMWI GCNNNNNNNGC 3 cut(s) 113, 1091, 1313
BstNI CCWGG 1 cut(s) 1154
BstNSI RCATGY 1 cut(s) 428
BstPAI GACNNNNGTC 1 cut(s) 923
BstSCI CCNGG 2 cut(s) 331, 1152
BstSFI CTRYAG 2 cut(s) 567, 1251
BstV1I GCAGC 4 cut(s) 187, 965, 1078, 1291
BstV2I GAAGAC 4 cut(s) 36, 84, 414, 919
BstX2I RGATCY 2 cut(s) 341, 1125
BstYI RGATCY 2 cut(s) 341, 1125
BstZ17I GTATAC 1 cut(s) 357
Bsu36I CCTNAGG 2 cut(s) 553, 876
BsuRI GGCC 4 cut(s) 69, 116, 390, 674
BtsCI GGATG 3 cut(s) 47, 654, 889
Cac8I GCNNGC 3 cut(s) 135, 535, 1083
Cfr13I GGNCC 5 cut(s) 67, 101, 115, 766, 1330
Csp6I GTAC 3 cut(s) 422, 830, 1105
CviAII CATG 1 cut(s) 425
CviQI GTAC 3 cut(s) 422, 830, 1105
DdeI CTNAG 5 cut(s) 228, 553, 590, 876, 1336
DpnI GATC 9 cut(s) 249, 309, 326, 343, 574, 848, 1058, 1127, 1274
DpnII GATC 9 cut(s) 247, 307, 324, 341, 572, 846, 1056, 1125, 1272
DraI TTTAAA 1 cut(s) 1354
EaeI YGGCCR 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
EciI GGCGGA 1 cut(s) 113
Ecl136II GAGCTC 1 cut(s) 1206
Eco130I CCWWGG 4 cut(s) 70, 921, 1061, 1169
Eco24I GRGCYC 1 cut(s) 1208
Eco32I GATATC 1 cut(s) 499
Eco47I GGWCC 3 cut(s) 101, 766, 1330
Eco53kI GAGCTC 1 cut(s) 1206
Eco81I CCTNAGG 2 cut(s) 553, 876
EcoICRI GAGCTC 1 cut(s) 1206
EcoNI CCTNNNNNAGG 1 cut(s) 1290
EcoO109I RGGNCCY 2 cut(s) 101, 766
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 1152
EcoRV GATATC 1 cut(s) 499
EcoT14I CCWWGG 4 cut(s) 70, 921, 1061, 1169
EcoT38I GRGCYC 1 cut(s) 1208
ErhI CCWWGG 4 cut(s) 70, 921, 1061, 1169
Esp3I CGTCTC 1 cut(s) 519
FaeI CATG 1 cut(s) 428
FalI AAGNNNNNCTT 4 cut(s) 20, 52, 914, 946
FaqI GGGAC 3 cut(s) 87, 752, 1316
FatI CATG 1 cut(s) 424
FauI CCCGC 2 cut(s) 112, 1260
FbaI TGATCA 2 cut(s) 247, 324
FblI GTMKAC 3 cut(s) 356, 369, 909
Fnu4HI GCNGC 5 cut(s) 201, 388, 954, 1092, 1305
FokI GGATG 3 cut(s) 34, 661, 896
FriOI GRGCYC 1 cut(s) 1208
Fsp4HI GCNGC 5 cut(s) 201, 388, 954, 1092, 1305
FspBI CTAG 5 cut(s) 189, 1182, 1224, 1287, 1313
GluI GCNGC 5 cut(s) 201, 388, 954, 1092, 1305
GsuI CTGGAG 2 cut(s) 728, 1136
HaeIII GGCC 4 cut(s) 69, 116, 390, 674
HapII CCGG 5 cut(s) 260, 332, 563, 620, 1123
Hin1II CATG 1 cut(s) 428
HincII GTYRAC 2 cut(s) 910, 1179
HindII GTYRAC 2 cut(s) 910, 1179
HinfI GANTC 9 cut(s) 31, 78, 241, 317, 643, 974, 1043, 1175, 1370
HpaII CCGG 5 cut(s) 260, 332, 563, 620, 1123
HphI GGTGA 3 cut(s) 17, 692, 1282
Hpy166II GTNNAC 6 cut(s) 357, 370, 454, 910, 1179, 1418
Hpy188III TCNNGA 5 cut(s) 28, 245, 555, 1123, 1136
Hpy8I GTNNAC 6 cut(s) 357, 370, 454, 910, 1179, 1418
HpyAV CCTTC 5 cut(s) 46, 231, 734, 780, 898
HpyCH4III ACNGT 1 cut(s) 1117
HpyCH4IV ACGT 1 cut(s) 627
HpyCH4V TGCA 2 cut(s) 467, 1307
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 1091, 1313
HpyF3I CTNAG 5 cut(s) 228, 553, 590, 876, 1336
HpySE526I ACGT 1 cut(s) 627
Hsp92II CATG 1 cut(s) 428
Kpn2I TCCGGA 1 cut(s) 1122
Ksp22I TGATCA 2 cut(s) 247, 324
Kzo9I GATC 9 cut(s) 247, 307, 324, 341, 572, 846, 1056, 1125, 1272
LmnI GCTCC 3 cut(s) 142, 1155, 1450
Lsp1109I GCAGC 4 cut(s) 187, 965, 1078, 1291
MaeI CTAG 5 cut(s) 189, 1182, 1224, 1287, 1313
MaeII ACGT 1 cut(s) 627
MaeIII GTNAC 2 cut(s) 5, 810
MalI GATC 9 cut(s) 249, 309, 326, 343, 574, 848, 1058, 1127, 1274
MboI GATC 9 cut(s) 247, 307, 324, 341, 572, 846, 1056, 1125, 1272
MboII GAAGA 9 cut(s) 36, 84, 349, 419, 919, 1042, 1045, 1052, 1122
MfeI CAATTG 1 cut(s) 864
MflI RGATCY 2 cut(s) 341, 1125
MhlI GDGCHC 2 cut(s) 1152, 1208
MlyI GAGTC 3 cut(s) 87, 311, 1184
MmeI TCCRAC 1 cut(s) 471
MroI TCCGGA 1 cut(s) 1122
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 4 cut(s) 441, 612, 1244, 1353
MspA1I CMGCKG 1 cut(s) 1439
MspI CCGG 5 cut(s) 260, 332, 563, 620, 1123
MspR9I CCNGG 2 cut(s) 333, 1154
MssI GTTTAAAC 1 cut(s) 1354
MunI CAATTG 1 cut(s) 864
MvaI CCWGG 1 cut(s) 1154
MwoI GCNNNNNNNGC 3 cut(s) 113, 1091, 1313
NciI CCSGG 1 cut(s) 333
NdeII GATC 9 cut(s) 247, 307, 324, 341, 572, 846, 1056, 1125, 1272
NlaIII CATG 1 cut(s) 428
NlaIV GGNNCC 8 cut(s) 103, 138, 544, 618, 768, 819, 1127, 1332
NmeAIII GCCGAG 1 cut(s) 1187
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 1 cut(s) 428
NspV TTCGAA 1 cut(s) 269
PciI ACATGT 1 cut(s) 424
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 6 cut(s) 31, 241, 643, 974, 1043, 1370
PflFI GACNNNGTC 1 cut(s) 413
PkrI GCNGC 5 cut(s) 202, 389, 955, 1093, 1306
PleI GAGTC 3 cut(s) 86, 311, 1183
PmeI GTTTAAAC 1 cut(s) 1354
PpsI GAGTC 3 cut(s) 86, 311, 1183
PpuMI RGGWCCY 2 cut(s) 101, 766
PscI ACATGT 1 cut(s) 424
PshAI GACNNNNGTC 1 cut(s) 923
Psp124BI GAGCTC 1 cut(s) 1208
Psp5II RGGWCCY 2 cut(s) 101, 766
Psp6I CCWGG 1 cut(s) 1152
PspGI CCWGG 1 cut(s) 1152
PspN4I GGNNCC 8 cut(s) 103, 138, 544, 618, 768, 819, 1127, 1332
PspPI GGNCC 5 cut(s) 67, 101, 115, 766, 1330
PspPPI RGGWCCY 2 cut(s) 101, 766
PsuI RGATCY 2 cut(s) 341, 1125
PsyI GACNNNGTC 1 cut(s) 413
PvuII CAGCTG 1 cut(s) 1439
RsaI GTAC 3 cut(s) 423, 831, 1106
RsaNI GTAC 3 cut(s) 422, 830, 1105
SacI GAGCTC 1 cut(s) 1208
SalI GTCGAC 1 cut(s) 908
SaqAI TTAA 4 cut(s) 441, 612, 1244, 1353
SatI GCNGC 5 cut(s) 201, 388, 954, 1092, 1305
Sau3AI GATC 9 cut(s) 247, 307, 324, 341, 572, 846, 1056, 1125, 1272
Sau96I GGNCC 5 cut(s) 67, 101, 115, 766, 1330
SchI GAGTC 3 cut(s) 87, 311, 1184
ScrFI CCNGG 2 cut(s) 333, 1154
SduI GDGCHC 2 cut(s) 1152, 1208
SfcI CTRYAG 2 cut(s) 567, 1251
SfuI TTCGAA 1 cut(s) 269
SinI GGWCC 3 cut(s) 101, 766, 1330
SmlI CTYRAG 1 cut(s) 1406
SmoI CTYRAG 1 cut(s) 1406
SsiI CCGC 5 cut(s) 105, 124, 387, 913, 1267
SspMI CTAG 5 cut(s) 189, 1182, 1224, 1287, 1313
SstI GAGCTC 1 cut(s) 1208
StyD4I CCNGG 2 cut(s) 331, 1152
StyI CCWWGG 4 cut(s) 70, 921, 1061, 1169
TaaI ACNGT 1 cut(s) 1117
TaiI ACGT 1 cut(s) 630
TaqI TCGA 3 cut(s) 269, 849, 909
TauI GCSGC 1 cut(s) 390
TfiI GAWTC 6 cut(s) 31, 241, 643, 974, 1043, 1370
Tru1I TTAA 4 cut(s) 441, 612, 1244, 1353
Tru9I TTAA 4 cut(s) 441, 612, 1244, 1353
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 4 cut(s) 200, 953, 1091, 1304
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 7 cut(s) 13, 36, 84, 183, 809, 900, 1413
TspGWI ACGGA 1 cut(s) 409
Tth111I GACNNNGTC 1 cut(s) 413
VpaK11BI GGWCC 3 cut(s) 101, 766, 1330
XagI CCTNNNNNAGG 1 cut(s) 1290
XapI RAATTY 7 cut(s) 20, 59, 172, 178, 184, 853, 1232
XceI RCATGY 1 cut(s) 428
XcmI CCANNNNNNNNNTGG 1 cut(s) 1136
XmiI GTMKAC 3 cut(s) 356, 369, 909
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 5 cut(s) 189, 1182, 1224, 1287, 1313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.