Rw4G034560

UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
61594993 .. 61598110
3118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G034560.1

Sequence Viewer

Length: 1437 bp
ATGGACGACATGAAAGACAAGGTCAAGGGCTTCATCAAGAACCCATTCTCGTCTTCTTCCTCCGGCAAATTCAAGGGCCAAGGCCGAGTCTTGGGCTCCTCCTCCGCCGGTCCCGCCAATTCTCCGATCCTCGGCCGCGCCTCGCAGCCTCCCCAATCCAAGCCCAACCCCATTTCCACCTCAAAGTCTTCTTCGTCAACTTCCAAGCCTTCGCCTCAGAGAACCCAGAGCCTCGATCAGAAGAGACCCGAATTGCCGACGGAACCAAAGCCCAACCGCAAACCGCAAGAGGGGTTTGATCCGTTCGACGCCTTAATCACTCCGGGGAAGAGATCTCAGAATGGGTTTACCTTGAACGTGTTTGATTGCCCAATTTGCGGCAAAGCTTTCAGGTCAGAAGACGAGGTGTCCATACATGTTGATAGCTGTGTGAATAATTCAGCTGACAATGAAAGTGCGGAGGGTGTTTCGGGGTCGGCGGAGAGTGTGGAGACGTCTCGGAGTGGATTGGAGGCTTGCATTGGTACTTTTGCTTCAGGCAATCCCGGTTCGGGGTCTGTTGAGGTTGTGCTGAGGCTGTTGAGGAATATAGTTAGGGAGCCGGAGAATGTGAAGTTCAGGAAGGTTCGGATGAGTAATCCGAAGATTAGGGAGGCCATTGGTGAGGTTGTGGGAGGCATTGAGTTGCTGGAGTTTGTGGGGTTTGAATTGAAAGAAGAGGAGGGAGAGATGTGGGCAGTGATGGAGGTTCCTTCCGCGGAACAGATTGGTGTAATCAAGAAGGGGATAGAATTGCTGGAACCGCCCAAGGTGCAAGAACCGCAGAAGAAAGAGAAGTTGACATCCGCTGGTTCGGGTGACTTGGATGAACAGATTGAACCAAATAAGGTTGACAGACAGACCAGGGTCTTCTTTTCTGTCTCTGAAAGTGTAGCAGCAAAAATTGAGCTACCAGAAAGTTTCTATAGCCTCTCAGCTATGGAGCTGAAAAGAGAAGCTGAAGCGAGAAAGAAGAAGATTGACGATTCGCAGATGCTGATACCGAAGTCATATAGGGAAAAGCAGGCGAAAGCTGCTAAAAAGAGGTACACAAAAACTGTTATCCGGGTCCAGTTTCCTGACGGAGTGGTGCTTCAAGGTGTTTTTTCTCCTGCAGAGCCAACTAGTGCTCTCTATGAGTACGTCAGCTTAGCATTGAAAGAGCCTTGTTTGGAATTTGAGCTGCTGAATCCTGCAGCTATCAAGCGGCGGGTGATCCCCCGCTCTCCTGCAGCAGGGGAGAGACCAGCAACACTAGCTGATGAGGACTTGGTCCCCTCGGCTCTTGTCAAGTTTAAACCTATTGAAACGGATTCCATTGTTTTCACGGGGCTATGCAATGAACTCCTTCAAATTAGTGAACCACTTGGAAGTGGTTCAGCTGTTGGTCACGCATAA

Protein Analysis

478

Amino Acids

51.89

Weight (kDa)

6.38

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUB PF09409 186 - 260 7.8e-18 PUB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011213)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 497
AccBSI CCGCTC 1 cut(s) 1263
AccII CGCG 2 cut(s) 138, 758
AclWI GGATC 3 cut(s) 121, 293, 1249
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 2 cut(s) 68, 1214
AcuI CTGAAG 2 cut(s) 519, 1020
AcyI GRCGYC 2 cut(s) 309, 494
AfaI GTAC 3 cut(s) 526, 1088, 1181
AfiI CCNNNNNNNGG 7 cut(s) 91, 131, 290, 377, 551, 552, 1274
AflIII ACRYGT 2 cut(s) 357, 415
AgsI TTSAA 9 cut(s) 73, 355, 707, 712, 878, 1136, 1198, 1346, 1391
AhdI GACNNNNNGTC 1 cut(s) 406
AhlI ACTAGT 1 cut(s) 1163
AjnI CCWGG 1 cut(s) 902
Alw21I GWGCWC 1 cut(s) 1171
Alw26I GTCTC 5 cut(s) 238, 485, 501, 925, 1276
AlwI GGATC 3 cut(s) 121, 293, 1249
AlwNI CAGNNNCTG 1 cut(s) 1036
AoxI GGCC 4 cut(s) 76, 82, 133, 654
ApeKI GCWGC 6 cut(s) 145, 935, 1073, 1222, 1235, 1271
ApoI RAATTY 2 cut(s) 68, 1214
Asp700I GAANNNNTTC 3 cut(s) 44, 1386, 1414
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 4 cut(s) 76, 110, 1108, 1312
AsuC2I CCSGG 3 cut(s) 324, 546, 1106
AsuHPI GGTGA 3 cut(s) 674, 869, 1264
AvaII GGWCC 3 cut(s) 110, 1108, 1312
BaeI ACNNNNGTAYC 2 cut(s) 1031, 1064
BanII GRGCYC 1 cut(s) 98
BarI GAAGNNNNNNTAC 2 cut(s) 517, 549
BbsI GAAGAC 4 cut(s) 45, 180, 405, 901
Bbv12I GWGCWC 1 cut(s) 1171
BbvCI CCTCAGC 1 cut(s) 572
BbvI GCAGC 6 cut(s) 157, 947, 1060, 1209, 1247, 1283
BccI CCATC 1 cut(s) 736
BciT130I CCWGG 1 cut(s) 904
BcnI CCSGG 3 cut(s) 324, 546, 1106
BcoDI GTCTC 5 cut(s) 238, 485, 501, 925, 1276
BcuI ACTAGT 1 cut(s) 1163
BfaI CTAG 2 cut(s) 1164, 1295
BfmI CTRYAG 4 cut(s) 964, 1152, 1233, 1269
BglII AGATCT 1 cut(s) 332
BisI GCNGC 9 cut(s) 136, 146, 379, 936, 1074, 1223, 1236, 1247, 1272
BlpI GCTNAGC 1 cut(s) 1189
BlsI GCNGC 9 cut(s) 137, 147, 380, 937, 1075, 1224, 1237, 1248, 1273
Bme1390I CCNGG 4 cut(s) 324, 546, 904, 1106
Bme18I GGWCC 3 cut(s) 110, 1108, 1312
BmeRI GACNNNNNGTC 1 cut(s) 406
BmgT120I GGNCC 4 cut(s) 76, 110, 1108, 1312
BmiI GGNNCC 8 cut(s) 97, 112, 264, 600, 750, 801, 1109, 1314
BmrFI CCNGG 4 cut(s) 324, 546, 904, 1106
BmsI GCATC 1 cut(s) 1023
BoxI GACNNNNGTC 1 cut(s) 905
BpiI GAAGAC 4 cut(s) 45, 180, 405, 901
BpmI CTGGAG 1 cut(s) 710
Bpu10I CCTNAGC 1 cut(s) 572
Bpu1102I GCTNAGC 1 cut(s) 1189
BpuMI CCSGG 3 cut(s) 324, 546, 1106
BsaHI GRCGYC 2 cut(s) 309, 494
BsaI GGTCTC 2 cut(s) 238, 1276
BsaJI CCNNGG 7 cut(s) 79, 130, 323, 756, 807, 903, 1317
Bsc4I CCNNNNNNNGG 7 cut(s) 91, 131, 290, 377, 551, 552, 1274
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 1111
Bse3DI GCAATG 1 cut(s) 1384
BseBI CCWGG 1 cut(s) 904
BseDI CCNNGG 7 cut(s) 79, 130, 323, 756, 807, 903, 1317
BseGI GGATG 3 cut(s) 636, 842, 871
BseLI CCNNNNNNNGG 7 cut(s) 91, 131, 290, 377, 551, 552, 1274
BseMI GCAATG 1 cut(s) 1384
BseMII CTCAG 4 cut(s) 230, 350, 563, 987
BseNI ACTGG 1 cut(s) 1111
BseRI GAGGAG 3 cut(s) 88, 91, 734
BseX3I CGGCCG 1 cut(s) 133
BseXI GCAGC 6 cut(s) 157, 947, 1060, 1209, 1247, 1283
Bsh1236I CGCG 2 cut(s) 138, 758
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 4 cut(s) 78, 84, 135, 656
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 1171
BsiSI CCGG 6 cut(s) 63, 108, 323, 546, 602, 1105
BslFI GGGAC 2 cut(s) 96, 1298
BslI CCNNNNNNNGG 7 cut(s) 91, 131, 290, 377, 551, 552, 1274
BsmAI GTCTC 5 cut(s) 238, 485, 501, 925, 1276
BsmBI CGTCTC 2 cut(s) 485, 501
BsmFI GGGAC 2 cut(s) 96, 1298
BsnI GGCC 4 cut(s) 78, 84, 135, 656
Bso31I GGTCTC 2 cut(s) 238, 1276
Bsp1286I GDGCHC 2 cut(s) 98, 1171
Bsp143I GATC 5 cut(s) 126, 235, 298, 332, 1254
Bsp1720I GCTNAGC 1 cut(s) 1189
BspANI GGCC 4 cut(s) 78, 84, 135, 656
BspCNI CTCAG 4 cut(s) 229, 349, 564, 986
BspFNI CGCG 2 cut(s) 138, 758
BspLI GGNNCC 8 cut(s) 97, 112, 264, 600, 750, 801, 1109, 1314
BspMAI CTGCAG 3 cut(s) 1156, 1237, 1273
BspPI GGATC 3 cut(s) 121, 293, 1249
BspTNI GGTCTC 2 cut(s) 238, 1276
BsrBI CCGCTC 1 cut(s) 1263
BsrDI GCAATG 1 cut(s) 1384
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 1 cut(s) 1111
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 7 cut(s) 79, 130, 323, 756, 807, 903, 1317
BssMI GATC 5 cut(s) 126, 235, 298, 332, 1254
BssNI GRCGYC 2 cut(s) 309, 494
BssT1I CCWWGG 2 cut(s) 79, 807
Bst2UI CCWGG 1 cut(s) 904
Bst4CI ACNGT 1 cut(s) 1099
Bst6I CTCTTC 3 cut(s) 236, 323, 711
BstACI GRCGYC 2 cut(s) 309, 494
BstC8I GCNNGC 2 cut(s) 517, 1065
BstDEI CTNAG 5 cut(s) 216, 336, 572, 973, 1189
BstDSI CCRYGG 1 cut(s) 756
BstENI CCTNNNNNAGG 1 cut(s) 1272
BstF5I GGATG 3 cut(s) 636, 842, 871
BstFNI CGCG 2 cut(s) 138, 758
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 5 cut(s) 129, 238, 301, 335, 1257
BstMAI GTCTC 5 cut(s) 238, 485, 501, 925, 1276
BstMBI GATC 5 cut(s) 126, 235, 298, 332, 1254
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 7 cut(s) 113, 375, 802, 811, 820, 1073, 1295
BstNI CCWGG 1 cut(s) 904
BstNSI RCATGY 1 cut(s) 419
BstPAI GACNNNNGTC 1 cut(s) 905
BstSCI CCNGG 4 cut(s) 322, 544, 902, 1104
BstSFI CTRYAG 4 cut(s) 964, 1152, 1233, 1269
BstUI CGCG 2 cut(s) 138, 758
BstV1I GCAGC 6 cut(s) 157, 947, 1060, 1209, 1247, 1283
BstV2I GAAGAC 4 cut(s) 45, 180, 405, 901
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BstZI CGGCCG 1 cut(s) 133
BsuRI GGCC 4 cut(s) 78, 84, 135, 656
BtgI CCRYGG 1 cut(s) 756
BtsCI GGATG 3 cut(s) 636, 842, 871
BtsI GCAGTG 1 cut(s) 744
BtsIMutI CAGTG 1 cut(s) 744
Cac8I GCNNGC 2 cut(s) 517, 1065
CaiI CAGNNNCTG 1 cut(s) 1036
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 4 cut(s) 76, 110, 1108, 1312
Cfr42I CCGCGG 1 cut(s) 759
CseI GACGC 1 cut(s) 317
Csp6I GTAC 3 cut(s) 525, 1087, 1180
CviAII CATG 2 cut(s) 10, 416
CviQI GTAC 3 cut(s) 525, 1087, 1180
DdeI CTNAG 5 cut(s) 216, 336, 572, 973, 1189
DpnI GATC 5 cut(s) 128, 237, 300, 334, 1256
DpnII GATC 5 cut(s) 126, 235, 298, 332, 1254
DraI TTTAAA 1 cut(s) 1336
DriI GACNNNNNGTC 1 cut(s) 406
EaeI YGGCCR 1 cut(s) 133
EagI CGGCCG 1 cut(s) 133
Eam1104I CTCTTC 3 cut(s) 236, 323, 711
Eam1105I GACNNNNNGTC 1 cut(s) 406
EarI CTCTTC 3 cut(s) 236, 323, 711
EciI GGCGGA 2 cut(s) 94, 494
EclXI CGGCCG 1 cut(s) 133
Eco130I CCWWGG 2 cut(s) 79, 807
Eco24I GRGCYC 1 cut(s) 98
Eco31I GGTCTC 2 cut(s) 238, 1276
Eco47I GGWCC 3 cut(s) 110, 1108, 1312
Eco52I CGGCCG 1 cut(s) 133
Eco57I CTGAAG 2 cut(s) 519, 1020
EcoNI CCTNNNNNAGG 1 cut(s) 1272
EcoRII CCWGG 1 cut(s) 902
EcoT14I CCWWGG 2 cut(s) 79, 807
EcoT38I GRGCYC 1 cut(s) 98
ErhI CCWWGG 2 cut(s) 79, 807
Esp3I CGTCTC 2 cut(s) 485, 501
FaeI CATG 2 cut(s) 13, 419
FaqI GGGAC 2 cut(s) 96, 1298
FatI CATG 2 cut(s) 9, 415
FauI CCCGC 3 cut(s) 121, 1242, 1268
Fnu4HI GCNGC 9 cut(s) 136, 146, 379, 936, 1074, 1223, 1236, 1247, 1272
FokI GGATG 3 cut(s) 643, 829, 878
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 9 cut(s) 136, 146, 379, 936, 1074, 1223, 1236, 1247, 1272
FspBI CTAG 2 cut(s) 1164, 1295
GlaI GCGC 1 cut(s) 139
GluI GCNGC 9 cut(s) 136, 146, 379, 936, 1074, 1223, 1236, 1247, 1272
GsuI CTGGAG 1 cut(s) 710
HaeIII GGCC 4 cut(s) 78, 84, 135, 656
HapII CCGG 6 cut(s) 63, 108, 323, 546, 602, 1105
HgaI GACGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 140
Hin1I GRCGYC 2 cut(s) 309, 494
Hin1II CATG 2 cut(s) 13, 419
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 3 cut(s) 198, 840, 892
HindII GTYRAC 3 cut(s) 198, 840, 892
HindIII AAGCTT 1 cut(s) 384
HinfI GANTC 4 cut(s) 87, 1025, 1228, 1352
HpaII CCGG 6 cut(s) 63, 108, 323, 546, 602, 1105
HphI GGTGA 3 cut(s) 674, 869, 1264
Hpy166II GTNNAC 6 cut(s) 198, 348, 840, 892, 1089, 1400
Hpy188I TCNGA 9 cut(s) 126, 219, 240, 339, 397, 501, 630, 642, 925
Hpy188III TCNNGA 4 cut(s) 37, 619, 778, 1118
Hpy8I GTNNAC 6 cut(s) 198, 348, 840, 892, 1089, 1400
Hpy99I CGWCG 2 cut(s) 262, 311
HpyAV CCTTC 5 cut(s) 219, 616, 762, 775, 1397
HpyCH4III ACNGT 1 cut(s) 1099
HpyCH4IV ACGT 3 cut(s) 357, 494, 1182
HpyCH4V TGCA 6 cut(s) 519, 814, 1154, 1235, 1271, 1377
HpyF10VI GCNNNNNNNGC 7 cut(s) 113, 375, 802, 811, 820, 1073, 1295
HpyF3I CTNAG 5 cut(s) 216, 336, 572, 973, 1189
HpySE526I ACGT 3 cut(s) 357, 494, 1182
Hsp92I GRCGYC 2 cut(s) 309, 494
Hsp92II CATG 2 cut(s) 13, 419
HspAI GCGC 1 cut(s) 138
KspI CCGCGG 1 cut(s) 759
Kzo9I GATC 5 cut(s) 126, 235, 298, 332, 1254
LmnI GCTCC 3 cut(s) 101, 598, 982
Lsp1109I GCAGC 6 cut(s) 157, 947, 1060, 1209, 1247, 1283
LweI GCATC 1 cut(s) 1023
MaeI CTAG 2 cut(s) 1164, 1295
MaeII ACGT 3 cut(s) 357, 494, 1182
MaeIII GTNAC 2 cut(s) 857, 1427
MalI GATC 5 cut(s) 128, 237, 300, 334, 1256
MbiI CCGCTC 1 cut(s) 1263
MboI GATC 5 cut(s) 126, 235, 298, 332, 1254
MflI RGATCY 1 cut(s) 332
MhlI GDGCHC 2 cut(s) 98, 1171
MlyI GAGTC 1 cut(s) 96
MroXI GAANNNNTTC 3 cut(s) 44, 1386, 1414
MseI TTAA 2 cut(s) 314, 1335
MspA1I CMGCKG 4 cut(s) 443, 758, 848, 1421
MspI CCGG 6 cut(s) 63, 108, 323, 546, 602, 1105
MspR9I CCNGG 4 cut(s) 324, 546, 904, 1106
MssI GTTTAAAC 1 cut(s) 1336
MvaI CCWGG 1 cut(s) 904
MvnI CGCG 2 cut(s) 138, 758
MwoI GCNNNNNNNGC 7 cut(s) 113, 375, 802, 811, 820, 1073, 1295
NciI CCSGG 3 cut(s) 324, 546, 1106
NdeII GATC 5 cut(s) 126, 235, 298, 332, 1254
NlaIII CATG 2 cut(s) 13, 419
NlaIV GGNNCC 8 cut(s) 97, 112, 264, 600, 750, 801, 1109, 1314
NmeAIII GCCGAG 3 cut(s) 110, 111, 1298
NmuCI GTSAC 2 cut(s) 857, 1427
NspI RCATGY 1 cut(s) 419
PciI ACATGT 1 cut(s) 415
PdmI GAANNNNTTC 3 cut(s) 44, 1386, 1414
PfeI GAWTC 3 cut(s) 1025, 1228, 1352
PflFI GACNNNGTC 2 cut(s) 20, 1310
PkrI GCNGC 9 cut(s) 137, 147, 380, 937, 1075, 1224, 1237, 1248, 1273
PleI GAGTC 1 cut(s) 95
PmeI GTTTAAAC 1 cut(s) 1336
PpsI GAGTC 1 cut(s) 95
PscI ACATGT 1 cut(s) 415
PshAI GACNNNNGTC 1 cut(s) 905
Psp6I CCWGG 1 cut(s) 902
PspGI CCWGG 1 cut(s) 902
PspN4I GGNNCC 8 cut(s) 97, 112, 264, 600, 750, 801, 1109, 1314
PspPI GGNCC 4 cut(s) 76, 110, 1108, 1312
PstI CTGCAG 3 cut(s) 1156, 1237, 1273
PstNI CAGNNNCTG 1 cut(s) 1036
PsuI RGATCY 1 cut(s) 332
PsyI GACNNNGTC 2 cut(s) 20, 1310
PvuII CAGCTG 2 cut(s) 443, 1421
RsaI GTAC 3 cut(s) 526, 1088, 1181
RsaNI GTAC 3 cut(s) 525, 1087, 1180
SacII CCGCGG 1 cut(s) 759
SaqAI TTAA 2 cut(s) 314, 1335
SatI GCNGC 9 cut(s) 136, 146, 379, 936, 1074, 1223, 1236, 1247, 1272
Sau3AI GATC 5 cut(s) 126, 235, 298, 332, 1254
Sau96I GGNCC 4 cut(s) 76, 110, 1108, 1312
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 4 cut(s) 324, 546, 904, 1106
SduI GDGCHC 2 cut(s) 98, 1171
SfaNI GCATC 1 cut(s) 1023
SfcI CTRYAG 4 cut(s) 964, 1152, 1233, 1269
Sfr303I CCGCGG 1 cut(s) 759
SgrBI CCGCGG 1 cut(s) 759
SinI GGWCC 3 cut(s) 110, 1108, 1312
SpeI ACTAGT 1 cut(s) 1163
SspMI CTAG 2 cut(s) 1164, 1295
StyD4I CCNGG 4 cut(s) 322, 544, 902, 1104
StyI CCWWGG 2 cut(s) 79, 807
TaaI ACNGT 1 cut(s) 1099
TaiI ACGT 3 cut(s) 360, 497, 1185
TaqI TCGA 2 cut(s) 234, 306
TauI GCSGC 3 cut(s) 138, 381, 1249
TfiI GAWTC 3 cut(s) 1025, 1228, 1352
Tru1I TTAA 2 cut(s) 314, 1335
Tru9I TTAA 2 cut(s) 314, 1335
TscAI CASTG 1 cut(s) 744
TseFI GTSAC 2 cut(s) 857, 1427
TseI GCWGC 6 cut(s) 145, 935, 1073, 1222, 1235, 1271
Tsp45I GTSAC 2 cut(s) 857, 1427
TspDTI ATGAA 5 cut(s) 22, 26, 465, 882, 1395
TspGWI ACGGA 4 cut(s) 275, 291, 1137, 1364
TspRI CASTG 1 cut(s) 744
Tth111I GACNNNGTC 2 cut(s) 20, 1310
VpaK11BI GGWCC 3 cut(s) 110, 1108, 1312
XagI CCTNNNNNAGG 1 cut(s) 1272
XapI RAATTY 2 cut(s) 68, 1214
XceI RCATGY 1 cut(s) 419
XmnI GAANNNNTTC 3 cut(s) 44, 1386, 1414
XspI CTAG 2 cut(s) 1164, 1295
ZraI GACGTC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.