FvH4_4g33820

UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
31887455 .. 31890593
3139 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g33820.t1

Sequence Viewer

Length: 1374 bp
ATGGACGACATGAAGGACAAGGTCAAGGGCTTCATCAAGAACCCCTTCTCCTCTTCCTCCTCCGGCAAATTCAAAGGCCAAGGCCGAGTCCTCGGCTCCTCCTCCTCCTCCTCCTCCGGTCCCGCCAATTCCCCGATCCTCGGCCGCGCCGCCCAACCCAATCCCAAGCCCAAGCCCAACCCCGTCTCCACCTCCAAGCCTCCGCCGCAGAAACCCCAACCCCCGGCGAATCCAAAGCCCAGTAGTCGAGAGGGCTTTGATCCCTTCGACGCTCTCATAACTCCGGGGAAGAGATCCCAGAACGGCTTCACTCTCAACGTCTTCGATTGCCCAATCTGCGGTAAATCTTTCCGGTCAGAAGACGAGGTCTCCGTTCACGTTGACACCTGTGTTAACAGCTCAGACGAGAACAACAGTGCCGAAGGTGTTTCAGGCTCGGTGGAGTCTCAATTGGAGGCCTGCGTTGGCGCATTTGCTTCGGGTTCGGGGAATGTGGAGGTTGTGGTGAGGCTGTTGAGGAATATAGTGAGGGAGCCGGAGAATGTGAAGTTCCGGAAAGTGAGGATGAGCAATCCGAAGATCAGGGAGGCGATTGGGGAGGTGGTGGGAGGTGTGGAGTTGCTGGAGTGTGTGGGGTTTGAGTTGAGAGAGGAGGAGGGGGAAATGTGGGCTGTGATGGAGGAGGTTCCTAACGCGGAGCGAATTGGTGTGATGAAGAAGGGGATAGAGTTGCTGGAACCACCAAAGGCGCAAGAACGGGAGAGGAAAGAGAAGTTGGTGTCTGATGGGTCTGGTGAGTTGGAGGAAGGGGTTGAACCGAAGAAGGTTGACAGACAGACTAGGGTCTTCTTTTCTGTCTCTGAAAGTCTAGCTGCGAAAATTGAGCTACCAGAAAGTTTCTATAGCCTCTCAGCTATGGAGCTGAAAAGAGAAGCAGAAGCTAGAAAGAAGAAGATTGAAGATTCACAGATGCTGATACCAAAGTCATATAGGGAAAAGCAGGCAAAAGCTGCTAAAAAGAGGTACACAAAAACTGTTATCCGGGTCCAATTTCCTGACGGAGTGGTGCTCCAAGGTGTTTTTTCTCCTGCGGAACCTACTAGCGCTCTCTATGAGTACGTCAGCTTAGCATTGAAAGAGCCTTGTTTGGAATTTGAACTGTTGAATCCTGTTGCTATCAAGAGGCGGGTGATCCCCCACTCTCCTGCACCAGGTGAGAGACCAGCAACACTAGCTGATGAGGACTTGGTCCCCTCTGCTCTTGTCAAGTTTAAACCTATGGAAACGGATACCATTGTTTTCACCGGGCTGTGCAATGAACTCCTTCAAATTAGTGAACCACTTGGAAACGGTTCAGCTCTTGGTCATGCATAA

Protein Analysis

458

Amino Acids

49.81

Weight (kDa)

6.19

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUB PF09409 164 - 229 6.4e-17 PUB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011213)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 147, 695
AccIII TCCGGA 1 cut(s) 552
AciI CCGC 9 cut(s) 123, 145, 150, 203, 206, 339, 695, 1091, 1186
AclWI GGATC 4 cut(s) 130, 254, 288, 1186
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 2 cut(s) 68, 1151
AdeI CACNNNGTG 1 cut(s) 1214
AfaI GTAC 2 cut(s) 1025, 1118
AfeI AGCGCT 1 cut(s) 1105
AfiI CCNNNNNNNGG 4 cut(s) 140, 223, 338, 1211
AgsI TTSAA 7 cut(s) 73, 815, 959, 1135, 1157, 1165, 1328
AjnI CCWGG 1 cut(s) 1210
AjuI GAANNNNNNNTTGG 2 cut(s) 758, 790
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
Alw21I GWGCWC 1 cut(s) 1071
Alw26I GTCTC 5 cut(s) 190, 373, 450, 862, 1213
AlwI GGATC 4 cut(s) 130, 254, 288, 1186
AlwNI CAGNNNCTG 1 cut(s) 973
Aor13HI TCCGGA 1 cut(s) 552
Aor51HI AGCGCT 1 cut(s) 1105
AoxI GGCC 4 cut(s) 76, 82, 142, 456
ApeKI GCWGC 2 cut(s) 872, 1010
ApoI RAATTY 2 cut(s) 68, 1151
Asp700I GAANNNNTTC 4 cut(s) 44, 305, 1323, 1351
AspLEI GCGC 4 cut(s) 149, 470, 751, 1106
AspS9I GGNCC 3 cut(s) 119, 1045, 1249
AsuC2I CCSGG 4 cut(s) 224, 285, 1043, 1306
AsuHPI GGTGA 5 cut(s) 517, 806, 1201, 1226, 1294
AvaII GGWCC 3 cut(s) 119, 1045, 1249
BaeI ACNNNNGTAYC 4 cut(s) 968, 1001, 1281, 1314
BbsI GAAGAC 3 cut(s) 313, 366, 838
Bbv12I GWGCWC 1 cut(s) 1071
BbvI GCAGC 2 cut(s) 859, 997
BccI CCATC 2 cut(s) 670, 779
BceAI ACGGC 1 cut(s) 319
BcgI CGANNNNNNTGC 2 cut(s) 459, 493
BciT130I CCWGG 1 cut(s) 1212
BciVI GTATCC 1 cut(s) 1282
BcnI CCSGG 4 cut(s) 224, 285, 1043, 1306
BcoDI GTCTC 5 cut(s) 190, 373, 450, 862, 1213
BfaI CTAG 5 cut(s) 840, 869, 942, 1101, 1232
BfmI CTRYAG 1 cut(s) 901
BfoI RGCGCY 1 cut(s) 1107
BfuI GTATCC 1 cut(s) 1282
BisI GCNGC 5 cut(s) 145, 150, 206, 873, 1011
BlpI GCTNAGC 1 cut(s) 1126
BlsI GCNGC 5 cut(s) 146, 151, 207, 874, 1012
Bme1390I CCNGG 5 cut(s) 224, 285, 1043, 1212, 1306
Bme18I GGWCC 3 cut(s) 119, 1045, 1249
BmgT120I GGNCC 3 cut(s) 119, 1045, 1249
BmiI GGNNCC 8 cut(s) 97, 121, 534, 687, 738, 1046, 1095, 1251
BmrFI CCNGG 5 cut(s) 224, 285, 1043, 1212, 1306
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 960
BmuI ACTGGG 1 cut(s) 234
BoxI GACNNNNGTC 1 cut(s) 842
BpiI GAAGAC 3 cut(s) 313, 366, 838
BplI GAGNNNNNCTC 2 cut(s) 1053, 1085
BpmI CTGGAG 1 cut(s) 644
Bpu1102I GCTNAGC 1 cut(s) 1126
BpuMI CCSGG 4 cut(s) 224, 285, 1043, 1306
BsaI GGTCTC 2 cut(s) 373, 1213
BsaJI CCNNGG 6 cut(s) 79, 91, 139, 222, 284, 1072
BsaWI WCCGGW 3 cut(s) 116, 351, 552
BsaXI ACNNNNNCTCC 6 cut(s) 32, 62, 170, 200, 353, 383
Bsc4I CCNNNNNNNGG 4 cut(s) 140, 223, 338, 1211
Bse1I ACTGG 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 1321
BseAI TCCGGA 1 cut(s) 552
BseBI CCWGG 1 cut(s) 1212
BseDI CCNNGG 6 cut(s) 79, 91, 139, 222, 284, 1072
BseGI GGATG 1 cut(s) 570
BseLI CCNNNNNNNGG 4 cut(s) 140, 223, 338, 1211
BseMI GCAATG 1 cut(s) 1321
BseMII CTCAG 2 cut(s) 414, 924
BseNI ACTGG 1 cut(s) 240
BseX3I CGGCCG 1 cut(s) 142
BseXI GCAGC 2 cut(s) 859, 997
BsgI GTGCAG 1 cut(s) 1191
Bsh1236I CGCG 2 cut(s) 147, 695
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 4 cut(s) 78, 84, 144, 458
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 1071
BsiSI CCGG 9 cut(s) 63, 117, 224, 284, 352, 536, 553, 1042, 1305
BslFI GGGAC 2 cut(s) 105, 1235
BslI CCNNNNNNNGG 4 cut(s) 140, 223, 338, 1211
BsmAI GTCTC 5 cut(s) 190, 373, 450, 862, 1213
BsmBI CGTCTC 1 cut(s) 190
BsmFI GGGAC 2 cut(s) 105, 1235
BsnI GGCC 4 cut(s) 78, 84, 144, 458
Bso31I GGTCTC 2 cut(s) 373, 1213
Bsp1286I GDGCHC 1 cut(s) 1071
Bsp13I TCCGGA 1 cut(s) 552
Bsp143I GATC 5 cut(s) 135, 259, 293, 579, 1191
Bsp1720I GCTNAGC 1 cut(s) 1126
BspACI CCGC 9 cut(s) 123, 145, 150, 203, 206, 339, 695, 1091, 1186
BspANI GGCC 4 cut(s) 78, 84, 144, 458
BspCNI CTCAG 2 cut(s) 413, 923
BspEI TCCGGA 1 cut(s) 552
BspFNI CGCG 2 cut(s) 147, 695
BspLI GGNNCC 8 cut(s) 97, 121, 534, 687, 738, 1046, 1095, 1251
BspPI GGATC 4 cut(s) 130, 254, 288, 1186
BspTNI GGTCTC 2 cut(s) 373, 1213
BsrDI GCAATG 1 cut(s) 1321
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 6 cut(s) 79, 91, 139, 222, 284, 1072
BssMI GATC 5 cut(s) 135, 259, 293, 579, 1191
BssT1I CCWWGG 2 cut(s) 79, 1072
Bst2UI CCWGG 1 cut(s) 1212
Bst4CI ACNGT 4 cut(s) 416, 1036, 1161, 1352
Bst6I CTCTTC 2 cut(s) 58, 284
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstC8I GCNNGC 2 cut(s) 460, 1002
BstDEI CTNAG 3 cut(s) 400, 910, 1126
BstENI CCTNNNNNAGG 1 cut(s) 1209
BstF5I GGATG 1 cut(s) 570
BstFNI CGCG 2 cut(s) 147, 695
BstH2I RGCGCY 1 cut(s) 1107
BstHHI GCGC 4 cut(s) 149, 470, 751, 1106
BstKTI GATC 5 cut(s) 138, 262, 296, 582, 1194
BstMAI GTCTC 5 cut(s) 190, 373, 450, 862, 1213
BstMBI GATC 5 cut(s) 135, 259, 293, 579, 1191
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 4 cut(s) 205, 336, 1010, 1232
BstNI CCWGG 1 cut(s) 1212
BstPAI GACNNNNGTC 1 cut(s) 842
BstSCI CCNGG 5 cut(s) 222, 283, 1041, 1210, 1304
BstSFI CTRYAG 1 cut(s) 901
BstUI CGCG 2 cut(s) 147, 695
BstV1I GCAGC 2 cut(s) 859, 997
BstV2I GAAGAC 3 cut(s) 313, 366, 838
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BstZI CGGCCG 1 cut(s) 142
BsuI GTATCC 1 cut(s) 1282
BsuRI GGCC 4 cut(s) 78, 84, 144, 458
BtsCI GGATG 1 cut(s) 570
BtsIMutI CAGTG 1 cut(s) 421
Cac8I GCNNGC 2 cut(s) 460, 1002
CaiI CAGNNNCTG 1 cut(s) 973
CfoI GCGC 4 cut(s) 149, 470, 751, 1106
Cfr13I GGNCC 3 cut(s) 119, 1045, 1249
CseI GACGC 1 cut(s) 278
CsiI ACCWGGT 1 cut(s) 1210
Csp6I GTAC 2 cut(s) 1024, 1117
CviAII CATG 2 cut(s) 10, 1367
CviQI GTAC 2 cut(s) 1024, 1117
DdeI CTNAG 3 cut(s) 400, 910, 1126
DpnI GATC 5 cut(s) 137, 261, 295, 581, 1193
DpnII GATC 5 cut(s) 135, 259, 293, 579, 1191
DraI TTTAAA 1 cut(s) 1273
DraIII CACNNNGTG 1 cut(s) 1214
EaeI YGGCCR 1 cut(s) 142
EagI CGGCCG 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 58, 284
EarI CTCTTC 2 cut(s) 58, 284
EciI GGCGGA 1 cut(s) 192
EclXI CGGCCG 1 cut(s) 142
Eco130I CCWWGG 2 cut(s) 79, 1072
Eco147I AGGCCT 1 cut(s) 458
Eco31I GGTCTC 2 cut(s) 373, 1213
Eco47I GGWCC 3 cut(s) 119, 1045, 1249
Eco47III AGCGCT 1 cut(s) 1105
Eco52I CGGCCG 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 1209
EcoRII CCWGG 1 cut(s) 1210
EcoT14I CCWWGG 2 cut(s) 79, 1072
EcoT22I ATGCAT 1 cut(s) 1372
ErhI CCWWGG 2 cut(s) 79, 1072
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 2 cut(s) 13, 1370
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FaqI GGGAC 2 cut(s) 105, 1235
FatI CATG 2 cut(s) 9, 1366
FauI CCCGC 2 cut(s) 130, 1179
Fnu4HI GCNGC 5 cut(s) 145, 150, 206, 873, 1011
FokI GGATG 1 cut(s) 577
Fsp4HI GCNGC 5 cut(s) 145, 150, 206, 873, 1011
FspBI CTAG 5 cut(s) 840, 869, 942, 1101, 1232
GlaI GCGC 4 cut(s) 148, 469, 750, 1105
GluI GCNGC 5 cut(s) 145, 150, 206, 873, 1011
GsuI CTGGAG 1 cut(s) 644
HaeII RGCGCY 1 cut(s) 1107
HaeIII GGCC 4 cut(s) 78, 84, 144, 458
HapII CCGG 9 cut(s) 63, 117, 224, 284, 352, 536, 553, 1042, 1305
HgaI GACGC 1 cut(s) 278
HhaI GCGC 4 cut(s) 149, 470, 751, 1106
Hin1II CATG 2 cut(s) 13, 1370
Hin6I GCGC 4 cut(s) 147, 468, 749, 1104
HinP1I GCGC 4 cut(s) 147, 468, 749, 1104
HincII GTYRAC 3 cut(s) 382, 394, 829
HindII GTYRAC 3 cut(s) 382, 394, 829
HinfI GANTC 5 cut(s) 87, 229, 443, 962, 1165
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 9 cut(s) 63, 117, 224, 284, 352, 536, 553, 1042, 1305
HphI GGTGA 5 cut(s) 517, 806, 1201, 1226, 1294
Hpy166II GTNNAC 6 cut(s) 376, 382, 394, 829, 1026, 1337
Hpy188I TCNGA 5 cut(s) 358, 403, 576, 784, 862
Hpy188III TCNNGA 5 cut(s) 37, 248, 553, 1055, 1180
Hpy8I GTNNAC 6 cut(s) 376, 382, 394, 829, 1026, 1337
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 8 cut(s) 7, 55, 274, 416, 712, 800, 817, 1334
HpyCH4III ACNGT 4 cut(s) 416, 1036, 1161, 1352
HpyCH4IV ACGT 3 cut(s) 318, 378, 1119
HpyCH4V TGCA 3 cut(s) 1208, 1314, 1370
HpyF10VI GCNNNNNNNGC 4 cut(s) 205, 336, 1010, 1232
HpyF3I CTNAG 3 cut(s) 400, 910, 1126
HpySE526I ACGT 3 cut(s) 318, 378, 1119
Hsp92II CATG 2 cut(s) 13, 1370
HspAI GCGC 4 cut(s) 147, 468, 749, 1104
Kpn2I TCCGGA 1 cut(s) 552
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 5 cut(s) 135, 259, 293, 579, 1191
LmnI GCTCC 5 cut(s) 101, 532, 697, 919, 1074
Lsp1109I GCAGC 2 cut(s) 859, 997
LweI GCATC 1 cut(s) 960
MabI ACCWGGT 1 cut(s) 1210
MaeI CTAG 5 cut(s) 840, 869, 942, 1101, 1232
MaeII ACGT 3 cut(s) 318, 378, 1119
MalI GATC 5 cut(s) 137, 261, 295, 581, 1193
MboI GATC 5 cut(s) 135, 259, 293, 579, 1191
MfeI CAATTG 1 cut(s) 449
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 1 cut(s) 1071
MluCI AATT 8 cut(s) 68, 127, 449, 702, 879, 1049, 1151, 1329
MlyI GAGTC 2 cut(s) 96, 452
MmeI TCCRAC 1 cut(s) 780
Mph1103I ATGCAT 1 cut(s) 1372
MroI TCCGGA 1 cut(s) 552
MroXI GAANNNNTTC 4 cut(s) 44, 305, 1323, 1351
MseI TTAA 2 cut(s) 393, 1272
MspI CCGG 9 cut(s) 63, 117, 224, 284, 352, 536, 553, 1042, 1305
MspR9I CCNGG 5 cut(s) 224, 285, 1043, 1212, 1306
MssI GTTTAAAC 1 cut(s) 1273
MunI CAATTG 1 cut(s) 449
MvaI CCWGG 1 cut(s) 1212
MvnI CGCG 2 cut(s) 147, 695
MwoI GCNNNNNNNGC 4 cut(s) 205, 336, 1010, 1232
NciI CCSGG 4 cut(s) 224, 285, 1043, 1306
NdeII GATC 5 cut(s) 135, 259, 293, 579, 1191
NlaIII CATG 2 cut(s) 13, 1370
NlaIV GGNNCC 8 cut(s) 97, 121, 534, 687, 738, 1046, 1095, 1251
NmeAIII GCCGAG 3 cut(s) 72, 110, 120
NsiI ATGCAT 1 cut(s) 1372
PceI AGGCCT 1 cut(s) 458
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PdmI GAANNNNTTC 4 cut(s) 44, 305, 1323, 1351
PfeI GAWTC 3 cut(s) 229, 962, 1165
PflFI GACNNNGTC 3 cut(s) 20, 365, 1247
PkrI GCNGC 5 cut(s) 146, 151, 207, 874, 1012
PleI GAGTC 2 cut(s) 95, 451
PmeI GTTTAAAC 1 cut(s) 1273
PpsI GAGTC 2 cut(s) 95, 451
PshAI GACNNNNGTC 1 cut(s) 842
Psp6I CCWGG 1 cut(s) 1210
PspGI CCWGG 1 cut(s) 1210
PspN4I GGNNCC 8 cut(s) 97, 121, 534, 687, 738, 1046, 1095, 1251
PspPI GGNCC 3 cut(s) 119, 1045, 1249
PstNI CAGNNNCTG 1 cut(s) 973
PsuI RGATCY 1 cut(s) 293
PsyI GACNNNGTC 3 cut(s) 20, 365, 1247
RsaI GTAC 2 cut(s) 1025, 1118
RsaNI GTAC 2 cut(s) 1024, 1117
SaqAI TTAA 2 cut(s) 393, 1272
SatI GCNGC 5 cut(s) 145, 150, 206, 873, 1011
Sau3AI GATC 5 cut(s) 135, 259, 293, 579, 1191
Sau96I GGNCC 3 cut(s) 119, 1045, 1249
SchI GAGTC 2 cut(s) 96, 452
ScrFI CCNGG 5 cut(s) 224, 285, 1043, 1212, 1306
SduI GDGCHC 1 cut(s) 1071
SexAI ACCWGGT 1 cut(s) 1210
SfaNI GCATC 1 cut(s) 960
SfcI CTRYAG 1 cut(s) 901
SinI GGWCC 3 cut(s) 119, 1045, 1249
Sse9I AATT 8 cut(s) 68, 127, 449, 702, 879, 1049, 1151, 1329
SseBI AGGCCT 1 cut(s) 458
SsiI CCGC 9 cut(s) 123, 145, 150, 203, 206, 339, 695, 1091, 1186
SspMI CTAG 5 cut(s) 840, 869, 942, 1101, 1232
StuI AGGCCT 1 cut(s) 458
StyD4I CCNGG 5 cut(s) 222, 283, 1041, 1210, 1304
StyI CCWWGG 2 cut(s) 79, 1072
TaaI ACNGT 4 cut(s) 416, 1036, 1161, 1352
TaiI ACGT 3 cut(s) 321, 381, 1122
TaqI TCGA 3 cut(s) 247, 267, 324
TasI AATT 8 cut(s) 68, 127, 449, 702, 879, 1049, 1151, 1329
TauI GCSGC 3 cut(s) 147, 152, 208
TfiI GAWTC 3 cut(s) 229, 962, 1165
Tru1I TTAA 2 cut(s) 393, 1272
Tru9I TTAA 2 cut(s) 393, 1272
TscAI CASTG 1 cut(s) 421
TseI GCWGC 2 cut(s) 872, 1010
TspDTI ATGAA 4 cut(s) 22, 26, 728, 1332
TspGWI ACGGA 3 cut(s) 361, 1074, 1301
TspRI CASTG 1 cut(s) 421
Tth111I GACNNNGTC 3 cut(s) 20, 365, 1247
VpaK11BI GGWCC 3 cut(s) 119, 1045, 1249
XagI CCTNNNNNAGG 1 cut(s) 1209
XapI RAATTY 2 cut(s) 68, 1151
XmnI GAANNNNTTC 4 cut(s) 44, 305, 1323, 1351
XspI CTAG 5 cut(s) 840, 869, 942, 1101, 1232
Zsp2I ATGCAT 1 cut(s) 1372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.