pycom13g01820

UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
1223239 .. 1226116
2878 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g01820.2

Sequence Viewer

Length: 1473 bp
ATGGACGACATGAAAGACAAGTTCAAGGGCTTCATGAAGACCACCTTCTCGTCTTCCTCCTCCGCTAAATTCAAGGGCCAAGGCCGAGTCTTGGGATCGTCTTCTTCCTCCGGCACCGCCGATTCGGTCCTCACTCGCCCTAAGCAGACACCCCAATCCAATCCCAAACCCCTTCCCATTTCGAATTCGAATTCTTCGGTCGCCTCCCCAAATCCCAGGCCTTCGCCTCAGAAAGCGCTGATTCTTGATCAGAAGAAAGCGCAAATTCCTGACCAGAGCAAGGCGGAGCCGTCGAGCAATTCGAAGCCTGATCGGAAAACGGATTCTGGGTTTGATCCGTTTGACTCTCTGATCACGCCGGGGAAGAGATCCCAAAACGGGTTTACGCTAAATGTATTCGAATGTCCGATTTGCGGGCAATCGTTTAGGTCGGAAGACGAGGTCTCCGTACATGTGGACAGCTGTGTTAATGCTCCTGTGGAGCACAAAAGTGTAGAGGGTGTTGGCGTTTCGGGGTCGCCGGATAACGGGTCTGAGTCGTCGAGGAGTGATTTGGAAGCTTGCATTGGTACCTTTGCTTCGGGAAATCCGGCTGCAGGGTCGGTTGAGGTTGTTCTTAGGCTGTTGAGGAATATAGTTAAGGAACCGGAGAATGTGAAGTTTAGAAGGATCCGGATGAGTAATCCGAAGATACGGGAGGCCATTGGTGAGGTTGTGGGAGGCATTGAGTTGCTGGAGTTTGTGGGGTTTGAATTGAAAGAGGAGGATGGGGAGATGTGGGCATTGATGGAGGTTCCTAAGGAGGAACAAATTAGTTTAATGAAAAAGGCAATAGCATTACTGGAACCCCCGAAGGTACAAGAAGTAGACCCTTTGCCATCCATTGCTTCACTGAACGTGGATGAACCAGTTGAACCAAAGAAGGTCGACCGGCAGACGAGGGTCTTCTTTTCGGTCTCTGAAAGTATGGCAGCAAGAATTGAAGTACCAGCATCTTTCTACAACCTCACAGCTACGGAGCTGAAAAGAGAAGCTGAAATGAGAAAGAAAAAGATTGAAGATTCACAGTTGTTGATCCCAAAGTCGTTCAAGGAAAAGCAGGCGAAAGCCGCTAAAAGGAGATACAGAAAAACTGTTATCCGGATCCAGTTTCCCGATGGAGTGGTGCTCCAGGGTGTTTTTTCTCCTTTGGAGCCAACTAGCTCATTATACGAGTATGTGAGCTCAGCGTTGAAAGAGCCTAGTTTGGAATTCGAGCTGTTAAATCCTGTAGCTATCAAACGGCGGGTGATCCCTCATTTTCCAGCAGCAGGAGAGAAAGCTGCAACACTAGCTGATGAGGATTTGATGCCCTCGGCTCTTGTCAAGTTCAAGCCCATCGAAACAGATTCGGTTGTTTTCACAGGGCTGTGTAACCAACTCCTTGAAATAAGCGAACCACTTACGAGCGGTTCAGCTGTTGCTCCTGTATAA

Protein Analysis

491

Amino Acids

53.51

Weight (kDa)

6.46

Isoelectric Point (pI)

57.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011213)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 569
AccB1I GGYRCC 2 cut(s) 113, 569
AccBSI CCGCTC 1 cut(s) 1449
AccI GTMKAC 2 cut(s) 867, 927
AccIII TCCGGA 2 cut(s) 672, 1140
AciI CCGC 7 cut(s) 63, 117, 284, 414, 1110, 1285, 1449
AclWI GGATC 9 cut(s) 103, 329, 363, 664, 677, 1069, 1138, 1151, 1285
AcsI RAATTY 5 cut(s) 68, 184, 190, 264, 1250
AfaI GTAC 4 cut(s) 450, 571, 858, 987
AfeI AGCGCT 1 cut(s) 237
AfiI CCNNNNNNNGG 8 cut(s) 91, 280, 378, 413, 527, 596, 1116, 1310
AflIII ACRYGT 1 cut(s) 451
AjnI CCWGG 2 cut(s) 215, 1170
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AleI CACNNNNGTG 1 cut(s) 489
Alw21I GWGCWC 3 cut(s) 486, 1170, 1226
Alw26I GTCTC 2 cut(s) 448, 961
AlwI GGATC 9 cut(s) 103, 329, 363, 664, 677, 1069, 1138, 1151, 1285
Aor13HI TCCGGA 2 cut(s) 672, 1140
Aor51HI AGCGCT 1 cut(s) 237
AoxI GGCC 4 cut(s) 76, 82, 218, 699
ApeKI GCWGC 4 cut(s) 593, 971, 1307, 1322
ApoI RAATTY 5 cut(s) 68, 184, 190, 264, 1250
Asp718I GGTACC 1 cut(s) 569
AspLEI GCGC 2 cut(s) 238, 262
AspS9I GGNCC 2 cut(s) 76, 127
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 2 cut(s) 719, 1300
AsuII TTCGAA 4 cut(s) 182, 188, 302, 399
AvaII GGWCC 1 cut(s) 127
AxyI CCTNAGG 1 cut(s) 798
BamHI GGATCC 2 cut(s) 669, 1143
BanI GGYRCC 2 cut(s) 113, 569
BanII GRGCYC 1 cut(s) 1226
BarI GAAGNNNNNNTAC 2 cut(s) 562, 594
BbsI GAAGAC 5 cut(s) 44, 45, 93, 441, 937
Bbv12I GWGCWC 3 cut(s) 486, 1170, 1226
BbvI GCAGC 4 cut(s) 580, 983, 1309, 1319
BccI CCATC 5 cut(s) 761, 781, 886, 1151, 1385
BceAI ACGGC 2 cut(s) 274, 1298
BciT130I CCWGG 2 cut(s) 217, 1172
BclI TGATCA 2 cut(s) 247, 351
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 2 cut(s) 448, 961
BfaI CTAG 3 cut(s) 1200, 1242, 1331
BfmI CTRYAG 2 cut(s) 594, 1269
BfoI RGCGCY 1 cut(s) 239
BisI GCNGC 5 cut(s) 594, 972, 1110, 1308, 1323
BlpI GCTNAGC 1 cut(s) 1225
BlsI GCNGC 5 cut(s) 595, 973, 1111, 1309, 1324
Bme1390I CCNGG 3 cut(s) 217, 360, 1172
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 76, 127
BmiI GGNNCC 9 cut(s) 115, 288, 571, 645, 671, 795, 846, 1145, 1194
BmrFI CCNGG 3 cut(s) 217, 360, 1172
BmsI GCATC 2 cut(s) 1001, 1338
BoxI GACNNNNGTC 1 cut(s) 941
BpiI GAAGAC 5 cut(s) 44, 45, 93, 441, 937
BplI GAGNNNNNCTC 2 cut(s) 1152, 1184
BpmI CTGGAG 2 cut(s) 755, 1154
Bpu10I CCTNAGC 1 cut(s) 141
Bpu1102I GCTNAGC 1 cut(s) 1225
Bpu14I TTCGAA 4 cut(s) 182, 188, 302, 399
BpuMI CCSGG 1 cut(s) 360
BsaI GGTCTC 2 cut(s) 448, 961
BsaJI CCNNGG 5 cut(s) 79, 215, 359, 1171, 1353
BsaWI WCCGGW 3 cut(s) 646, 672, 1140
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 8 cut(s) 91, 280, 378, 413, 527, 596, 1116, 1310
Bse118I RCCGGY 1 cut(s) 930
Bse1I ACTGG 3 cut(s) 846, 908, 1147
Bse21I CCTNAGG 1 cut(s) 798
Bse3DI GCAATG 1 cut(s) 882
BseAI TCCGGA 2 cut(s) 672, 1140
BseBI CCWGG 2 cut(s) 217, 1172
BseDI CCNNGG 5 cut(s) 79, 215, 359, 1171, 1353
BseGI GGATG 4 cut(s) 681, 772, 878, 907
BseLI CCNNNNNNNGG 8 cut(s) 91, 280, 378, 413, 527, 596, 1116, 1310
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 3 cut(s) 242, 525, 1239
BseNI ACTGG 3 cut(s) 846, 908, 1147
BseRI GAGGAG 3 cut(s) 49, 559, 776
BseXI GCAGC 4 cut(s) 580, 983, 1309, 1319
Bsh1285I CGRYCG 2 cut(s) 201, 931
BshFI GGCC 4 cut(s) 78, 84, 220, 701
BshNI GGYRCC 2 cut(s) 113, 569
BsiEI CGRYCG 2 cut(s) 201, 931
BsiHKAI GWGCWC 3 cut(s) 486, 1170, 1226
BsiSI CCGG 8 cut(s) 111, 359, 521, 590, 647, 673, 931, 1141
BslI CCNNNNNNNGG 8 cut(s) 91, 280, 378, 413, 527, 596, 1116, 1310
BsmAI GTCTC 2 cut(s) 448, 961
BsnI GGCC 4 cut(s) 78, 84, 220, 701
Bso31I GGTCTC 2 cut(s) 448, 961
Bsp119I TTCGAA 4 cut(s) 182, 188, 302, 399
Bsp1286I GDGCHC 3 cut(s) 486, 1170, 1226
Bsp13I TCCGGA 2 cut(s) 672, 1140
Bsp1720I GCTNAGC 1 cut(s) 1225
BspACI CCGC 7 cut(s) 63, 117, 284, 414, 1110, 1285, 1449
BspANI GGCC 4 cut(s) 78, 84, 220, 701
BspCNI CTCAG 3 cut(s) 241, 526, 1238
BspEI TCCGGA 2 cut(s) 672, 1140
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 9 cut(s) 115, 288, 571, 645, 671, 795, 846, 1145, 1194
BspMAI CTGCAG 1 cut(s) 598
BspPI GGATC 9 cut(s) 103, 329, 363, 664, 677, 1069, 1138, 1151, 1285
BspT104I TTCGAA 4 cut(s) 182, 188, 302, 399
BspT107I GGYRCC 2 cut(s) 113, 569
BspTNI GGTCTC 2 cut(s) 448, 961
BsrBI CCGCTC 1 cut(s) 1449
BsrDI GCAATG 1 cut(s) 882
BsrFI RCCGGY 1 cut(s) 930
BsrI ACTGG 3 cut(s) 846, 908, 1147
BssAI RCCGGY 1 cut(s) 930
BssECI CCNNGG 5 cut(s) 79, 215, 359, 1171, 1353
BssT1I CCWWGG 1 cut(s) 79
Bst2UI CCWGG 2 cut(s) 217, 1172
Bst4CI ACNGT 2 cut(s) 1068, 1135
Bst6I CTCTTC 1 cut(s) 359
BstBI TTCGAA 4 cut(s) 182, 188, 302, 399
BstC8I GCNNGC 3 cut(s) 416, 562, 1101
BstDEI CTNAG 6 cut(s) 141, 228, 534, 617, 798, 1225
BstF5I GGATG 4 cut(s) 681, 772, 878, 907
BstH2I RGCGCY 1 cut(s) 239
BstHHI GCGC 2 cut(s) 238, 262
BstMAI GTCTC 2 cut(s) 448, 961
BstMCI CGRYCG 2 cut(s) 201, 931
BstMWI GCNNNNNNNGC 2 cut(s) 1109, 1331
BstNI CCWGG 2 cut(s) 217, 1172
BstNSI RCATGY 1 cut(s) 455
BstPAI GACNNNNGTC 1 cut(s) 941
BstSCI CCNGG 3 cut(s) 215, 358, 1170
BstSFI CTRYAG 2 cut(s) 594, 1269
BstV1I GCAGC 4 cut(s) 580, 983, 1309, 1319
BstV2I GAAGAC 5 cut(s) 44, 45, 93, 441, 937
BstX2I RGATCY 3 cut(s) 368, 669, 1143
BstYI RGATCY 3 cut(s) 368, 669, 1143
Bsu36I CCTNAGG 1 cut(s) 798
BsuRI GGCC 4 cut(s) 78, 84, 220, 701
BtsCI GGATG 4 cut(s) 681, 772, 878, 907
BtsIMutI CAGTG 1 cut(s) 890
Cac8I GCNNGC 3 cut(s) 416, 562, 1101
CciI TCATGA 1 cut(s) 33
CfoI GCGC 2 cut(s) 238, 262
Cfr10I RCCGGY 1 cut(s) 930
Cfr13I GGNCC 2 cut(s) 76, 127
Csp6I GTAC 4 cut(s) 449, 570, 857, 986
CviAII CATG 3 cut(s) 10, 34, 452
CviQI GTAC 4 cut(s) 449, 570, 857, 986
DdeI CTNAG 6 cut(s) 141, 228, 534, 617, 798, 1225
Eam1104I CTCTTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 359
EciI GGCGGA 1 cut(s) 299
Ecl136II GAGCTC 1 cut(s) 1224
Eco130I CCWWGG 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 1226
Eco31I GGTCTC 2 cut(s) 448, 961
Eco47I GGWCC 1 cut(s) 127
Eco47III AGCGCT 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 1224
Eco81I CCTNAGG 1 cut(s) 798
EcoICRI GAGCTC 1 cut(s) 1224
EcoRI GAATTC 3 cut(s) 184, 190, 1250
EcoRII CCWGG 2 cut(s) 215, 1170
EcoT14I CCWWGG 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 1226
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 3 cut(s) 13, 37, 455
FaiI YATR 8 cut(s) 11, 35, 453, 635, 968, 1210, 1218, 1471
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FatI CATG 3 cut(s) 9, 33, 451
FauI CCCGC 2 cut(s) 407, 1278
FbaI TGATCA 2 cut(s) 247, 351
FblI GTMKAC 2 cut(s) 867, 927
Fnu4HI GCNGC 5 cut(s) 594, 972, 1110, 1308, 1323
FokI GGATG 4 cut(s) 688, 779, 865, 914
FriOI GRGCYC 1 cut(s) 1226
Fsp4HI GCNGC 5 cut(s) 594, 972, 1110, 1308, 1323
FspBI CTAG 3 cut(s) 1200, 1242, 1331
GlaI GCGC 2 cut(s) 237, 261
GluI GCNGC 5 cut(s) 594, 972, 1110, 1308, 1323
GsuI CTGGAG 2 cut(s) 755, 1154
HaeII RGCGCY 1 cut(s) 239
HaeIII GGCC 4 cut(s) 78, 84, 220, 701
HapII CCGG 8 cut(s) 111, 359, 521, 590, 647, 673, 931, 1141
HhaI GCGC 2 cut(s) 238, 262
Hin1II CATG 3 cut(s) 13, 37, 455
Hin6I GCGC 2 cut(s) 236, 260
HinP1I GCGC 2 cut(s) 236, 260
HincII GTYRAC 1 cut(s) 928
HindII GTYRAC 1 cut(s) 928
HindIII AAGCTT 1 cut(s) 558
HinfI GANTC 8 cut(s) 87, 122, 241, 323, 344, 536, 1061, 1388
HpaII CCGG 8 cut(s) 111, 359, 521, 590, 647, 673, 931, 1141
HphI GGTGA 2 cut(s) 719, 1300
Hpy166II GTNNAC 4 cut(s) 384, 457, 868, 928
Hpy188I TCNGA 9 cut(s) 231, 252, 315, 351, 408, 433, 535, 687, 961
Hpy188III TCNNGA 7 cut(s) 34, 245, 269, 582, 673, 1141, 1154
Hpy8I GTNNAC 4 cut(s) 384, 457, 868, 928
Hpy99I CGWCG 2 cut(s) 295, 544
HpyAV CCTTC 6 cut(s) 55, 182, 231, 660, 847, 916
HpyCH4III ACNGT 2 cut(s) 1068, 1135
HpyCH4IV ACGT 1 cut(s) 897
HpyCH4V TGCA 3 cut(s) 564, 596, 1325
HpyF10VI GCNNNNNNNGC 2 cut(s) 1109, 1331
HpyF3I CTNAG 6 cut(s) 141, 228, 534, 617, 798, 1225
HpySE526I ACGT 1 cut(s) 897
Hsp92II CATG 3 cut(s) 13, 37, 455
HspAI GCGC 2 cut(s) 236, 260
Kpn2I TCCGGA 2 cut(s) 672, 1140
KpnI GGTACC 1 cut(s) 573
Ksp22I TGATCA 2 cut(s) 247, 351
LmnI GCTCC 7 cut(s) 286, 478, 481, 1018, 1173, 1192, 1468
Lsp1109I GCAGC 4 cut(s) 580, 983, 1309, 1319
LweI GCATC 2 cut(s) 1001, 1338
MaeI CTAG 3 cut(s) 1200, 1242, 1331
MaeII ACGT 1 cut(s) 897
MaeIII GTNAC 1 cut(s) 1412
MbiI CCGCTC 1 cut(s) 1449
MflI RGATCY 3 cut(s) 368, 669, 1143
MhlI GDGCHC 3 cut(s) 486, 1170, 1226
MluCI AATT 9 cut(s) 68, 184, 190, 264, 298, 752, 810, 978, 1250
MlyI GAGTC 3 cut(s) 96, 338, 545
MmeI TCCRAC 1 cut(s) 411
MroI TCCGGA 2 cut(s) 672, 1140
MseI TTAA 4 cut(s) 468, 639, 818, 1262
MslI CAYNNNNRTG 1 cut(s) 489
MspA1I CMGCKG 2 cut(s) 462, 1457
MspI CCGG 8 cut(s) 111, 359, 521, 590, 647, 673, 931, 1141
MspR9I CCNGG 3 cut(s) 217, 360, 1172
MvaI CCWGG 2 cut(s) 217, 1172
MwoI GCNNNNNNNGC 2 cut(s) 1109, 1331
NciI CCSGG 1 cut(s) 360
NlaIII CATG 3 cut(s) 13, 37, 455
NlaIV GGNNCC 9 cut(s) 115, 288, 571, 645, 671, 795, 846, 1145, 1194
NmeAIII GCCGAG 2 cut(s) 110, 1334
NspI RCATGY 1 cut(s) 455
NspV TTCGAA 4 cut(s) 182, 188, 302, 399
OliI CACNNNNGTG 1 cut(s) 489
PagI TCATGA 1 cut(s) 33
PceI AGGCCT 1 cut(s) 220
PciI ACATGT 1 cut(s) 451
PcsI WCGNNNNNNNCGW 2 cut(s) 299, 444
PfeI GAWTC 5 cut(s) 122, 241, 323, 1061, 1388
PflFI GACNNNGTC 1 cut(s) 440
PkrI GCNGC 5 cut(s) 595, 973, 1111, 1309, 1324
PleI GAGTC 3 cut(s) 95, 338, 544
PpsI GAGTC 3 cut(s) 95, 338, 544
PscI ACATGT 1 cut(s) 451
PshAI GACNNNNGTC 1 cut(s) 941
Psp124BI GAGCTC 1 cut(s) 1226
Psp6I CCWGG 2 cut(s) 215, 1170
PspGI CCWGG 2 cut(s) 215, 1170
PspN4I GGNNCC 9 cut(s) 115, 288, 571, 645, 671, 795, 846, 1145, 1194
PspPI GGNCC 2 cut(s) 76, 127
PstI CTGCAG 1 cut(s) 598
PsuI RGATCY 3 cut(s) 368, 669, 1143
PsyI GACNNNGTC 1 cut(s) 440
PvuII CAGCTG 2 cut(s) 462, 1457
RsaI GTAC 4 cut(s) 450, 571, 858, 987
RsaNI GTAC 4 cut(s) 449, 570, 857, 986
RseI CAYNNNNRTG 1 cut(s) 489
SacI GAGCTC 1 cut(s) 1226
SalI GTCGAC 1 cut(s) 926
SaqAI TTAA 4 cut(s) 468, 639, 818, 1262
SatI GCNGC 5 cut(s) 594, 972, 1110, 1308, 1323
Sau96I GGNCC 2 cut(s) 76, 127
SchI GAGTC 3 cut(s) 96, 338, 545
ScrFI CCNGG 3 cut(s) 217, 360, 1172
SduI GDGCHC 3 cut(s) 486, 1170, 1226
SfaNI GCATC 2 cut(s) 1001, 1338
SfcI CTRYAG 2 cut(s) 594, 1269
SfuI TTCGAA 4 cut(s) 182, 188, 302, 399
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 489
Sse9I AATT 9 cut(s) 68, 184, 190, 264, 298, 752, 810, 978, 1250
SseBI AGGCCT 1 cut(s) 220
SsiI CCGC 7 cut(s) 63, 117, 284, 414, 1110, 1285, 1449
SspMI CTAG 3 cut(s) 1200, 1242, 1331
SstI GAGCTC 1 cut(s) 1226
StuI AGGCCT 1 cut(s) 220
StyD4I CCNGG 3 cut(s) 215, 358, 1170
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 2 cut(s) 1068, 1135
TaiI ACGT 1 cut(s) 900
TaqI TCGA 9 cut(s) 182, 188, 293, 302, 399, 542, 927, 1254, 1380
TaqII GACCGA 3 cut(s) 115, 187, 943
TasI AATT 9 cut(s) 68, 184, 190, 264, 298, 752, 810, 978, 1250
TauI GCSGC 1 cut(s) 1112
TfiI GAWTC 5 cut(s) 122, 241, 323, 1061, 1388
Tru1I TTAA 4 cut(s) 468, 639, 818, 1262
Tru9I TTAA 4 cut(s) 468, 639, 818, 1262
TscAI CASTG 1 cut(s) 897
TseI GCWGC 4 cut(s) 593, 971, 1307, 1322
TspDTI ATGAA 5 cut(s) 22, 26, 50, 836, 918
TspGWI ACGGA 4 cut(s) 327, 335, 436, 1031
TspRI CASTG 1 cut(s) 897
Tth111I GACNNNGTC 1 cut(s) 440
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 5 cut(s) 68, 184, 190, 264, 1250
XceI RCATGY 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 1154
XmiI GTMKAC 2 cut(s) 867, 927
XspI CTAG 3 cut(s) 1200, 1242, 1331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.