AT2G02400

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014331
Physical Location & Seq
Reverse (-)
631140 .. 632637
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02400.1

Sequence Viewer

Length: 957 bp
ATGGCGAAAGAGACAGTGTGTGTAACCGGAGCTAATGGTTTCATCGGATCTTGGATAATCCGAACGTTAATTGAGAAAGGATATACTAAAATCCACGCTTCGATTTACCCAGGATCCGACCCGACTCATCTTCTGCAACTACCCGGATCCGATTCTAAGATCAAGATCTTTGAAGCGGATCTCTTAGACTCTGATGCAATCTCCAGAGCTATTGATGGATGTGCGGGAGTGTTCCACGTGGCGTCACCTTGTACGTTGGATCCACCGGTAGATCCAGAGAAGGAGCTGGTCGAACCGGCGGTTAAGGGAACGATCAATGTGTTGGAAGCTGCTAAGAGGTTTAATGTGAGACGCGTGGTGATCACGTCATCTATCTCCGCATTGGTTCCTAACCCTAATTGGCCGGAAAAAGTTCCCGTCGATGAGTCGTCGTGGTCCGATCTTGATTTTTGCAAGTCGAGGCAGAAATGGTATCCAATTTCGAAGACATTAGCTGAGAAAGCAGCTTGGGAATTTTCGGAGAAGCATGGAACCAACATTGTGACGATTCATCCATCAACATGTCTCGGACCGCTTCTGCAACCGAACCTAAACGCAAGCTGTGCTGTTCTGCTACAGCTTTTACAAGGCTCGACCGAGACGCAAGAGCATCACTGGCTCGGTGTGGTTCACGTGAAAGATGTGGCTAAAGGTCATGTGATGCTATTCGAAACACCTGACGCTTCTGGACGGTTTTTATGCACTAATGGGATTTATCAGTTCAGTGAGTTTGCTGCTCTTGTGTCTAAGCTCTTCCCTGAGTTTGCTGTTCACAAGTTTGATAAAGAGACTCAACCTGGGCTTACGTCGTGTAATGATGCGGCTAAGCGATTGATTGAGCTCGGGCTGGTTTTTACTGCGGTTGAAGATGCGGTTAAGGAGACGGTCCAGAGTCTTAGAGACAAAGGCTTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

318

Amino Acids

34.84

Weight (kDa)

5.82

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KR PF08659 5 - 132 4.3e-08 KR domain
Epimerase PF01370 6 - 242 3.2e-27 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 6 - 130 1.9e-06 Polysaccharide biosynthesis protein
3Beta_HSD PF01073 8 - 234 3.1e-20 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 8 - 260 2.3e-14 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 8 - 190 1.3e-09 Male sterility protein
NAD_binding_10 PF13460 10 - 131 9.5e-13 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02400
fragaria_vesca FvH4_5g27181
malus_domestica MD08G1250300.v1.1
prunus_persica Prupe.1G587500_v2.0.a1 Prupe.1G587500_v2.0.a1
pyrus_communis pycom08g21710
rosa_chinensis RchiOBHm_Chr7g0218281
rosa_laevigata RLG00000002382
rosa_multiflora Rmu_co8255051.1_g000001 Rmu_sc0002408.1_g000014 Rmu_sc0004956.1_g000010
rosa_roxburghii Rroxscaffold_3G00241130
rosa_rugosa Rorug07G0176100.1
rosa_samantha Rh7AG317800 Rh7BG309100 Rh7DG316700
rosa_wichuraiana Rw7G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 354
AciI CCGC 8 cut(s) 176, 224, 299, 378, 572, 860, 899, 911
AclI AACGTT 1 cut(s) 65
AclWI GGATC 9 cut(s) 55, 108, 121, 141, 154, 186, 254, 266, 267
AcoI YGGCCR 1 cut(s) 401
AcsI RAATTY 1 cut(s) 512
AcvI CACGTG 2 cut(s) 238, 673
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 1 cut(s) 253
AflIII ACRYGT 2 cut(s) 352, 560
AgeI ACCGGT 1 cut(s) 265
AgsI TTSAA 2 cut(s) 173, 905
AjiI CACGTC 1 cut(s) 366
AjnI CCWGG 2 cut(s) 109, 835
Alw21I GWGCWC 1 cut(s) 882
Alw26I GTCTC 7 cut(s) 5, 343, 569, 632, 821, 914, 933
AlwI GGATC 9 cut(s) 55, 108, 121, 141, 154, 186, 254, 266, 267
Ama87I CYCGRG 1 cut(s) 881
AoxI GGCC 1 cut(s) 401
ApeKI GCWGC 3 cut(s) 329, 503, 773
ApoI RAATTY 1 cut(s) 512
AsiGI ACCGGT 1 cut(s) 265
Asp700I GAANNNNTTC 1 cut(s) 411
AspS9I GGNCC 3 cut(s) 435, 569, 925
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 237, 370
AsuII TTCGAA 2 cut(s) 482, 708
AvaI CYCGRG 1 cut(s) 881
AvaII GGWCC 3 cut(s) 435, 569, 925
BamHI GGATCC 3 cut(s) 113, 146, 259
BanII GRGCYC 1 cut(s) 882
BbrPI CACGTG 2 cut(s) 238, 673
BbsI GAAGAC 1 cut(s) 491
Bbv12I GWGCWC 1 cut(s) 882
BbvI GCAGC 3 cut(s) 316, 515, 760
BccI CCATC 2 cut(s) 209, 562
BciT130I CCWGG 2 cut(s) 111, 837
BciVI GTATCC 1 cut(s) 483
BclI TGATCA 1 cut(s) 360
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 7 cut(s) 5, 343, 569, 632, 821, 914, 933
BfmI CTRYAG 1 cut(s) 614
BfuI GTATCC 1 cut(s) 483
BglII AGATCT 1 cut(s) 165
BisI GCNGC 4 cut(s) 330, 504, 774, 861
BlpI GCTNAGC 1 cut(s) 864
BlsI GCNGC 4 cut(s) 331, 505, 775, 862
Bme1390I CCNGG 3 cut(s) 111, 144, 837
Bme18I GGWCC 3 cut(s) 435, 569, 925
BmeT110I CYCGRG 1 cut(s) 881
BmgBI CACGTC 1 cut(s) 366
BmgT120I GGNCC 3 cut(s) 435, 569, 925
BmiI GGNNCC 5 cut(s) 115, 148, 261, 387, 532
BmrFI CCNGG 3 cut(s) 111, 144, 837
BmsI GCATC 5 cut(s) 184, 658, 690, 847, 898
BpiI GAAGAC 1 cut(s) 491
BpmI CTGGAG 1 cut(s) 187
Bpu1102I GCTNAGC 1 cut(s) 864
Bpu14I TTCGAA 2 cut(s) 482, 708
BpuMI CCSGG 1 cut(s) 144
BsaAI YACGTR 2 cut(s) 238, 673
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 109, 836
BsaWI WCCGGW 2 cut(s) 26, 265
Bse118I RCCGGY 2 cut(s) 265, 295
Bse1I ACTGG 1 cut(s) 659
Bse8I GATNNNNATC 1 cut(s) 164
BseBI CCWGG 2 cut(s) 111, 837
BseDI CCNNGG 2 cut(s) 109, 836
BseGI GGATG 2 cut(s) 224, 550
BseJI GATNNNNATC 1 cut(s) 164
BseMII CTCAG 2 cut(s) 486, 789
BseNI ACTGG 1 cut(s) 659
BseXI GCAGC 3 cut(s) 316, 515, 760
Bsh1236I CGCG 1 cut(s) 354
Bsh1285I CGRYCG 1 cut(s) 636
BshFI GGCC 1 cut(s) 403
BshTI ACCGGT 1 cut(s) 265
BsiEI CGRYCG 1 cut(s) 636
BsiHKAI GWGCWC 1 cut(s) 882
BsiHKCI CYCGRG 1 cut(s) 881
BsiSI CCGG 5 cut(s) 27, 144, 266, 296, 404
BsmAI GTCTC 7 cut(s) 5, 343, 569, 632, 821, 914, 933
BsmBI CGTCTC 3 cut(s) 343, 632, 914
BsnI GGCC 1 cut(s) 403
BsoBI CYCGRG 1 cut(s) 881
Bsp119I TTCGAA 2 cut(s) 482, 708
Bsp1286I GDGCHC 1 cut(s) 882
Bsp1720I GCTNAGC 1 cut(s) 864
BspACI CCGC 8 cut(s) 176, 224, 299, 378, 572, 860, 899, 911
BspANI GGCC 1 cut(s) 403
BspCNI CTCAG 2 cut(s) 487, 790
BspFNI CGCG 1 cut(s) 354
BspLI GGNNCC 5 cut(s) 115, 148, 261, 387, 532
BspPI GGATC 9 cut(s) 55, 108, 121, 141, 154, 186, 254, 266, 267
BspQI GCTCTTC 1 cut(s) 797
BspT104I TTCGAA 2 cut(s) 482, 708
BsrFI RCCGGY 2 cut(s) 265, 295
BsrI ACTGG 1 cut(s) 659
BssAI RCCGGY 2 cut(s) 265, 295
BssECI CCNNGG 2 cut(s) 109, 836
BssNI GRCGYC 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 111, 837
Bst4CI ACNGT 3 cut(s) 16, 732, 925
Bst6I CTCTTC 1 cut(s) 797
BstACI GRCGYC 1 cut(s) 242
BstAPI GCANNNNNTGC 1 cut(s) 602
BstBAI YACGTR 2 cut(s) 238, 673
BstBI TTCGAA 2 cut(s) 482, 708
BstC8I GCNNGC 1 cut(s) 598
BstDEI CTNAG 8 cut(s) 156, 184, 333, 495, 786, 798, 864, 935
BstF5I GGATG 2 cut(s) 224, 550
BstFNI CGCG 1 cut(s) 354
BstMAI GTCTC 7 cut(s) 5, 343, 569, 632, 821, 914, 933
BstMCI CGRYCG 1 cut(s) 636
BstMWI GCNNNNNNNGC 3 cut(s) 500, 602, 655
BstNI CCWGG 2 cut(s) 111, 837
BstNSI RCATGY 1 cut(s) 564
BstSCI CCNGG 3 cut(s) 109, 142, 835
BstSFI CTRYAG 1 cut(s) 614
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 3 cut(s) 316, 515, 760
BstV2I GAAGAC 1 cut(s) 491
BstX2I RGATCY 7 cut(s) 47, 113, 146, 165, 178, 259, 271
BstYI RGATCY 7 cut(s) 47, 113, 146, 165, 178, 259, 271
BsuI GTATCC 1 cut(s) 483
BsuRI GGCC 1 cut(s) 403
BtrI CACGTC 1 cut(s) 366
BtsCI GGATG 2 cut(s) 224, 550
BtsIMutI CAGTG 3 cut(s) 21, 652, 769
Cac8I GCNNGC 1 cut(s) 598
Cfr10I RCCGGY 2 cut(s) 265, 295
Cfr13I GGNCC 3 cut(s) 435, 569, 925
CpoI CGGWCCG 1 cut(s) 569
CseI GACGC 4 cut(s) 231, 360, 649, 728
Csp6I GTAC 1 cut(s) 252
CspAI ACCGGT 1 cut(s) 265
CspI CGGWCCG 1 cut(s) 569
CviAII CATG 3 cut(s) 527, 561, 695
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 8 cut(s) 156, 184, 333, 495, 786, 798, 864, 935
EaeI YGGCCR 1 cut(s) 401
Eam1104I CTCTTC 1 cut(s) 797
EarI CTCTTC 1 cut(s) 797
Ecl136II GAGCTC 1 cut(s) 880
Eco24I GRGCYC 1 cut(s) 882
Eco47I GGWCC 3 cut(s) 435, 569, 925
Eco53kI GAGCTC 1 cut(s) 880
Eco72I CACGTG 2 cut(s) 238, 673
Eco88I CYCGRG 1 cut(s) 881
EcoICRI GAGCTC 1 cut(s) 880
EcoRII CCWGG 2 cut(s) 109, 835
EcoT38I GRGCYC 1 cut(s) 882
Esp3I CGTCTC 3 cut(s) 343, 632, 914
FaeI CATG 3 cut(s) 530, 564, 698
FaiI YATR 5 cut(s) 84, 528, 562, 696, 739
FatI CATG 3 cut(s) 526, 560, 694
FauI CCCGC 1 cut(s) 217
FbaI TGATCA 1 cut(s) 360
Fnu4HI GCNGC 4 cut(s) 330, 504, 774, 861
FokI GGATG 2 cut(s) 231, 537
FriOI GRGCYC 1 cut(s) 882
Fsp4HI GCNGC 4 cut(s) 330, 504, 774, 861
GluI GCNGC 4 cut(s) 330, 504, 774, 861
GsuI CTGGAG 1 cut(s) 187
HaeIII GGCC 1 cut(s) 403
HapII CCGG 5 cut(s) 27, 144, 266, 296, 404
HgaI GACGC 4 cut(s) 231, 360, 649, 728
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 3 cut(s) 530, 564, 698
HinfI GANTC 7 cut(s) 124, 152, 188, 425, 547, 829, 931
HpaII CCGG 5 cut(s) 27, 144, 266, 296, 404
HphI GGTGA 2 cut(s) 237, 370
Hpy166II GTNNAC 2 cut(s) 670, 811
Hpy188I TCNGA 9 cut(s) 47, 62, 118, 151, 193, 439, 520, 569, 956
Hpy188III TCNNGA 6 cut(s) 163, 204, 275, 443, 726, 928
Hpy8I GTNNAC 2 cut(s) 670, 811
Hpy99I CGWCG 3 cut(s) 422, 433, 850
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 3 cut(s) 16, 732, 925
HpyCH4IV ACGT 6 cut(s) 65, 237, 254, 365, 672, 845
HpyCH4V TGCA 5 cut(s) 136, 197, 453, 580, 741
HpyF10VI GCNNNNNNNGC 3 cut(s) 500, 602, 655
HpyF3I CTNAG 8 cut(s) 156, 184, 333, 495, 786, 798, 864, 935
HpySE526I ACGT 6 cut(s) 65, 237, 254, 365, 672, 845
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 3 cut(s) 530, 564, 698
Ksp22I TGATCA 1 cut(s) 360
LguI GCTCTTC 1 cut(s) 797
LmnI GCTCC 2 cut(s) 29, 283
Lsp1109I GCAGC 3 cut(s) 316, 515, 760
LweI GCATC 5 cut(s) 184, 658, 690, 847, 898
MaeII ACGT 6 cut(s) 65, 237, 254, 365, 672, 845
MaeIII GTNAC 3 cut(s) 22, 243, 541
MboII GAAGA 4 cut(s) 122, 496, 784, 917
MflI RGATCY 7 cut(s) 47, 113, 146, 165, 178, 259, 271
MhlI GDGCHC 1 cut(s) 882
MluCI AATT 4 cut(s) 69, 397, 477, 512
MluI ACGCGT 1 cut(s) 352
MlyI GAGTC 5 cut(s) 118, 182, 434, 823, 940
MmeI TCCRAC 3 cut(s) 141, 237, 303
MnlI CCTC 2 cut(s) 330, 453
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 4 cut(s) 68, 303, 342, 915
MslI CAYNNNNRTG 1 cut(s) 559
MspI CCGG 5 cut(s) 27, 144, 266, 296, 404
MspR9I CCNGG 3 cut(s) 111, 144, 837
MvaI CCWGG 2 cut(s) 111, 837
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 3 cut(s) 500, 602, 655
NciI CCSGG 1 cut(s) 144
NlaIII CATG 3 cut(s) 530, 564, 698
NlaIV GGNNCC 5 cut(s) 115, 148, 261, 387, 532
NmuCI GTSAC 2 cut(s) 243, 541
NspI RCATGY 1 cut(s) 564
NspV TTCGAA 2 cut(s) 482, 708
PciI ACATGT 1 cut(s) 560
PciSI GCTCTTC 1 cut(s) 797
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 2 cut(s) 152, 547
PinAI ACCGGT 1 cut(s) 265
PkrI GCNGC 4 cut(s) 331, 505, 775, 862
PleI GAGTC 5 cut(s) 118, 182, 433, 823, 939
PmaCI CACGTG 2 cut(s) 238, 673
PmlI CACGTG 2 cut(s) 238, 673
PpsI GAGTC 5 cut(s) 118, 182, 433, 823, 939
Ppu21I YACGTR 2 cut(s) 238, 673
PscI ACATGT 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 882
Psp1406I AACGTT 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 109, 835
PspCI CACGTG 2 cut(s) 238, 673
PspGI CCWGG 2 cut(s) 109, 835
PspN4I GGNNCC 5 cut(s) 115, 148, 261, 387, 532
PspPI GGNCC 3 cut(s) 435, 569, 925
PsuI RGATCY 7 cut(s) 47, 113, 146, 165, 178, 259, 271
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
RseI CAYNNNNRTG 1 cut(s) 559
Rsr2I CGGWCCG 1 cut(s) 569
RsrII CGGWCCG 1 cut(s) 569
SacI GAGCTC 1 cut(s) 882
SapI GCTCTTC 1 cut(s) 797
SaqAI TTAA 4 cut(s) 68, 303, 342, 915
SatI GCNGC 4 cut(s) 330, 504, 774, 861
Sau96I GGNCC 3 cut(s) 435, 569, 925
SchI GAGTC 5 cut(s) 118, 182, 434, 823, 940
ScrFI CCNGG 3 cut(s) 111, 144, 837
SduI GDGCHC 1 cut(s) 882
SfaNI GCATC 5 cut(s) 184, 658, 690, 847, 898
SfcI CTRYAG 1 cut(s) 614
SfuI TTCGAA 2 cut(s) 482, 708
SinI GGWCC 3 cut(s) 435, 569, 925
SmiMI CAYNNNNRTG 1 cut(s) 559
Sse9I AATT 4 cut(s) 69, 397, 477, 512
SsiI CCGC 8 cut(s) 176, 224, 299, 378, 572, 860, 899, 911
SstI GAGCTC 1 cut(s) 882
StyD4I CCNGG 3 cut(s) 109, 142, 835
TaaI ACNGT 3 cut(s) 16, 732, 925
TaiI ACGT 6 cut(s) 68, 240, 257, 368, 675, 848
TaqI TCGA 7 cut(s) 101, 291, 420, 458, 482, 632, 708
TaqII GACCGA 1 cut(s) 650
TasI AATT 4 cut(s) 69, 397, 477, 512
TauI GCSGC 1 cut(s) 863
TfiI GAWTC 2 cut(s) 152, 547
Tru1I TTAA 4 cut(s) 68, 303, 342, 915
Tru9I TTAA 4 cut(s) 68, 303, 342, 915
TscAI CASTG 3 cut(s) 21, 659, 769
TseFI GTSAC 2 cut(s) 243, 541
TseI GCWGC 3 cut(s) 329, 503, 773
Tsp45I GTSAC 2 cut(s) 243, 541
TspDTI ATGAA 2 cut(s) 31, 539
TspRI CASTG 3 cut(s) 21, 659, 769
VpaK11BI GGWCC 3 cut(s) 435, 569, 925
XapI RAATTY 1 cut(s) 512
XceI RCATGY 1 cut(s) 564
XmnI GAANNNNTTC 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.