Prupe.1G587500_v2.0.a1

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014331
Physical Location & Seq
Forward (+)
47716096 .. 47718248
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G587500.2

Sequence Viewer

Length: 882 bp
ATGGATGAAAAGAAGAAGAGGAAGGAGAAGAAGGAGGAGGCGGTGTGCGTGACTGGAGCCAATGGGTTCTTAGGGTCATGGTTGGTGAAGACTTTACTGGAAGAGGGCTACACCCGCATCCACGCCTCCGTCTATCCTGCCTCCGACTCCTCCCACCTCCTCAACCTCCCTGCTGCCTGTGGCCTCCCTCCTCACGACATCAATATCACCATCTTCGAGGCCGACCTCCTCGACGCCGACGCCGTCGCCAGAGCCATCGAGGACTGCCACGGTGTCTTCCACGTGGCGTCCCCTTGCACCCTCGAGGACCCCACCGACCCCCAGGCTGAGCTAGTGCTGCCCGCCGTCCAGGGCACGCTCAATGTCCTCCAAGCCGCCTTGCGCTTCGGCGTCAGGCGCGTCGTTCTCACCTCCTCCATCTCTGCCATGGTCCCCAACCCCTCTTGGCCCCCCCACAAGCCCTTCGACGAGTCCTCCTGGACTGACCTCGATTACTGCAAAGCCCGCCAGAAATGGTATCCGGTGTCAAAGACACTGGGTGAGAAAGCAGCGTGGGATTTTGCAGAGAAGCATGGATTGGATGTAGTGGCCATCCATCCAGCCACATGTCTTGGGCCGCTCCTGCAGCCTAGCACTCTCAATGCAAGCTGTGCTGTGTTGCTCAACTTGCTTCACGGTTCTGACGATACCCAAGAGTATCACTGGTTGGGGGCTGTCCATGTTCAAGACGTTGCCAAGGCACAACTTTTGCTATTTGAGACTCCTGCCGCTTCTGGCAGGTACCTTTGCACAAATGGTACCTTCCAATTTTCTCACTTTGCTGACACGGTCTCCAAACTCTATCCTCAATTTCCACTTCACAGCTGGGTAATCGCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

294

Amino Acids

32.08

Weight (kDa)

5.67

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02400
fragaria_vesca FvH4_5g27181
malus_domestica MD08G1250300.v1.1
prunus_persica Prupe.1G587500_v2.0.a1 Prupe.1G587500_v2.0.a1
pyrus_communis pycom08g21710
rosa_chinensis RchiOBHm_Chr7g0218281
rosa_laevigata RLG00000002382
rosa_multiflora Rmu_co8255051.1_g000001 Rmu_sc0002408.1_g000014 Rmu_sc0004956.1_g000010
rosa_roxburghii Rroxscaffold_3G00241130
rosa_rugosa Rorug07G0176100.1
rosa_samantha Rh7AG317800 Rh7BG309100 Rh7DG316700
rosa_wichuraiana Rw7G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 302
Acc36I ACCTGC 1 cut(s) 768
Acc65I GGTACC 2 cut(s) 780, 797
AccB1I GGYRCC 2 cut(s) 780, 797
AccBSI CCGCTC 1 cut(s) 619
AccII CGCG 1 cut(s) 399
AciI CCGC 7 cut(s) 41, 115, 342, 375, 505, 617, 768
AcoI YGGCCR 1 cut(s) 588
AcvI CACGTG 1 cut(s) 283
AcyI GRCGYC 4 cut(s) 234, 240, 287, 390
AdeI CACNNNGTG 1 cut(s) 539
AfaI GTAC 2 cut(s) 782, 799
AflIII ACRYGT 1 cut(s) 605
AgsI TTSAA 1 cut(s) 725
AjnI CCWGG 3 cut(s) 321, 348, 476
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AluBI AGCT 3 cut(s) 331, 648, 864
AluI AGCT 3 cut(s) 331, 648, 864
Alw26I GTCTC 2 cut(s) 752, 835
Ama87I CYCGRG 1 cut(s) 302
AoxI GGCC 5 cut(s) 181, 219, 446, 588, 614
ApeKI GCWGC 5 cut(s) 173, 337, 548, 625, 875
Asp718I GGTACC 2 cut(s) 780, 797
AspLEI GCGC 2 cut(s) 384, 399
AspS9I GGNCC 4 cut(s) 307, 430, 447, 614
AsuHPI GGTGA 4 cut(s) 97, 199, 400, 551
AvaI CYCGRG 1 cut(s) 302
AvaII GGWCC 2 cut(s) 307, 430
BaeGI GKGCMC 1 cut(s) 356
BalI TGGCCA 1 cut(s) 590
BanI GGYRCC 2 cut(s) 780, 797
BbrPI CACGTG 1 cut(s) 283
BbsI GAAGAC 2 cut(s) 95, 268
BbvI GCAGC 5 cut(s) 160, 324, 560, 637, 862
BccI CCATC 5 cut(s) 218, 263, 425, 599, 603
BceAI ACGGC 2 cut(s) 227, 329
BciT130I CCWGG 3 cut(s) 323, 350, 478
BciVI GTATCC 1 cut(s) 528
BcoDI GTCTC 2 cut(s) 752, 835
BfaI CTAG 2 cut(s) 332, 630
BfmI CTRYAG 1 cut(s) 623
BfuAI ACCTGC 1 cut(s) 768
BfuI GTATCC 1 cut(s) 528
BisI GCNGC 8 cut(s) 174, 338, 375, 549, 617, 626, 768, 876
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 8 cut(s) 175, 339, 376, 550, 618, 627, 769, 877
Bme1390I CCNGG 3 cut(s) 323, 350, 478
Bme18I GGWCC 2 cut(s) 307, 430
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 4 cut(s) 307, 430, 447, 614
BmiI GGNNCC 6 cut(s) 58, 309, 432, 449, 782, 799
BmrFI CCNGG 3 cut(s) 323, 350, 478
BmrI ACTGGG 1 cut(s) 545
BmsI GCATC 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 545
BpiI GAAGAC 2 cut(s) 95, 268
BpmI CTGGAG 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 327
BsaAI YACGTR 1 cut(s) 283
BsaHI GRCGYC 4 cut(s) 234, 240, 287, 390
BsaI GGTCTC 1 cut(s) 835
BsaJI CCNNGG 5 cut(s) 268, 321, 349, 426, 735
BsaWI WCCGGW 1 cut(s) 520
BsaXI ACNNNNNCTCC 6 cut(s) 29, 59, 458, 488, 815, 845
Bse1I ACTGG 4 cut(s) 58, 102, 540, 707
BseBI CCWGG 3 cut(s) 323, 350, 478
BseDI CCNNGG 5 cut(s) 268, 321, 349, 426, 735
BseGI GGATG 5 cut(s) 10, 117, 586, 591, 595
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 4 cut(s) 58, 102, 540, 707
BseRI GAGGAG 6 cut(s) 50, 139, 149, 180, 218, 403
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 5 cut(s) 160, 324, 560, 637, 862
BseYI CCCAGC 1 cut(s) 864
Bsh1236I CGCG 1 cut(s) 399
BshFI GGCC 5 cut(s) 183, 221, 448, 590, 616
BshNI GGYRCC 2 cut(s) 780, 797
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 1 cut(s) 521
BslFI GGGAC 2 cut(s) 274, 416
BsmAI GTCTC 2 cut(s) 752, 835
BsmFI GGGAC 2 cut(s) 274, 416
BsnI GGCC 5 cut(s) 183, 221, 448, 590, 616
Bso31I GGTCTC 1 cut(s) 835
BsoBI CYCGRG 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 356
Bsp1720I GCTNAGC 1 cut(s) 327
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 7 cut(s) 41, 115, 342, 375, 505, 617, 768
BspANI GGCC 5 cut(s) 183, 221, 448, 590, 616
BspCNI CTCAG 1 cut(s) 319
BspFNI CGCG 1 cut(s) 399
BspLI GGNNCC 6 cut(s) 58, 309, 432, 449, 782, 799
BspMAI CTGCAG 1 cut(s) 627
BspMI ACCTGC 1 cut(s) 768
BspT107I GGYRCC 2 cut(s) 780, 797
BspTNI GGTCTC 1 cut(s) 835
BsrBI CCGCTC 1 cut(s) 619
BsrI ACTGG 4 cut(s) 58, 102, 540, 707
BssECI CCNNGG 5 cut(s) 268, 321, 349, 426, 735
BssNI GRCGYC 4 cut(s) 234, 240, 287, 390
BssT1I CCWWGG 2 cut(s) 426, 735
Bst2UI CCWGG 3 cut(s) 323, 350, 478
Bst4CI ACNGT 3 cut(s) 272, 677, 829
Bst6I CTCTTC 2 cut(s) 11, 96
BstACI GRCGYC 4 cut(s) 234, 240, 287, 390
BstAPI GCANNNNNTGC 1 cut(s) 650
BstBAI YACGTR 1 cut(s) 283
BstC8I GCNNGC 4 cut(s) 342, 356, 505, 646
BstDEI CTNAG 2 cut(s) 70, 327
BstDSI CCRYGG 2 cut(s) 268, 426
BstF5I GGATG 5 cut(s) 10, 117, 586, 591, 595
BstFNI CGCG 1 cut(s) 399
BstHHI GCGC 2 cut(s) 384, 399
BstMAI GTCTC 2 cut(s) 752, 835
BstMWI GCNNNNNNNGC 8 cut(s) 114, 337, 396, 504, 622, 625, 650, 667
BstNI CCWGG 3 cut(s) 323, 350, 478
BstNSI RCATGY 1 cut(s) 609
BstSCI CCNGG 3 cut(s) 321, 348, 476
BstSFI CTRYAG 1 cut(s) 623
BstSLI GKGCMC 1 cut(s) 356
BstUI CGCG 1 cut(s) 399
BstV1I GCAGC 5 cut(s) 160, 324, 560, 637, 862
BstV2I GAAGAC 2 cut(s) 95, 268
BsuI GTATCC 1 cut(s) 528
BsuRI GGCC 5 cut(s) 183, 221, 448, 590, 616
BtgI CCRYGG 2 cut(s) 268, 426
BtsCI GGATG 5 cut(s) 10, 117, 586, 591, 595
BtsIMutI CAGTG 2 cut(s) 533, 700
BveI ACCTGC 1 cut(s) 768
Cac8I GCNNGC 4 cut(s) 342, 356, 505, 646
CfoI GCGC 2 cut(s) 384, 399
Cfr13I GGNCC 4 cut(s) 307, 430, 447, 614
CseI GACGC 5 cut(s) 242, 248, 276, 379, 388
Csp6I GTAC 2 cut(s) 781, 798
CspCI CAANNNNNGTGG 2 cut(s) 592, 627
CviAII CATG 5 cut(s) 78, 427, 572, 606, 719
CviQI GTAC 2 cut(s) 781, 798
DdeI CTNAG 2 cut(s) 70, 327
DraIII CACNNNGTG 1 cut(s) 539
EaeI YGGCCR 1 cut(s) 588
Eam1104I CTCTTC 2 cut(s) 11, 96
EarI CTCTTC 2 cut(s) 11, 96
Eco130I CCWWGG 2 cut(s) 426, 735
Eco31I GGTCTC 1 cut(s) 835
Eco47I GGWCC 2 cut(s) 307, 430
Eco72I CACGTG 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 307
EcoRII CCWGG 3 cut(s) 321, 348, 476
EcoT14I CCWWGG 2 cut(s) 426, 735
ErhI CCWWGG 2 cut(s) 426, 735
FaeI CATG 5 cut(s) 81, 430, 575, 609, 722
FaiI YATR 5 cut(s) 79, 428, 573, 607, 720
FaqI GGGAC 2 cut(s) 274, 416
FatI CATG 5 cut(s) 77, 426, 571, 605, 718
FauI CCCGC 3 cut(s) 122, 349, 512
Fnu4HI GCNGC 8 cut(s) 174, 338, 375, 549, 617, 626, 768, 876
FokI GGATG 5 cut(s) 17, 104, 578, 582, 593
Fsp4HI GCNGC 8 cut(s) 174, 338, 375, 549, 617, 626, 768, 876
FspBI CTAG 2 cut(s) 332, 630
GlaI GCGC 2 cut(s) 383, 398
GluI GCNGC 8 cut(s) 174, 338, 375, 549, 617, 626, 768, 876
GsaI CCCAGC 1 cut(s) 868
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 5 cut(s) 183, 221, 448, 590, 616
HapII CCGG 1 cut(s) 521
HgaI GACGC 5 cut(s) 242, 248, 276, 379, 388
HhaI GCGC 2 cut(s) 384, 399
Hin1I GRCGYC 4 cut(s) 234, 240, 287, 390
Hin1II CATG 5 cut(s) 81, 430, 575, 609, 722
Hin6I GCGC 2 cut(s) 382, 397
HinP1I GCGC 2 cut(s) 382, 397
HinfI GANTC 3 cut(s) 146, 470, 760
HpaII CCGG 1 cut(s) 521
HphI GGTGA 4 cut(s) 97, 199, 400, 551
Hpy188I TCNGA 2 cut(s) 145, 682
Hpy188III TCNNGA 2 cut(s) 194, 725
Hpy99I CGWCG 5 cut(s) 236, 242, 248, 404, 470
HpyAV CCTTC 4 cut(s) 16, 25, 472, 811
HpyCH4III ACNGT 3 cut(s) 272, 677, 829
HpyCH4IV ACGT 2 cut(s) 282, 729
HpyCH4V TGCA 6 cut(s) 297, 498, 563, 625, 644, 789
HpyF10VI GCNNNNNNNGC 8 cut(s) 114, 337, 396, 504, 622, 625, 650, 667
HpyF3I CTNAG 2 cut(s) 70, 327
HpySE526I ACGT 2 cut(s) 282, 729
Hsp92I GRCGYC 4 cut(s) 234, 240, 287, 390
Hsp92II CATG 5 cut(s) 81, 430, 575, 609, 722
HspAI GCGC 2 cut(s) 382, 397
KpnI GGTACC 2 cut(s) 784, 801
LmnI GCTCC 2 cut(s) 56, 624
Lsp1109I GCAGC 5 cut(s) 160, 324, 560, 637, 862
LweI GCATC 1 cut(s) 126
MaeI CTAG 2 cut(s) 332, 630
MaeII ACGT 2 cut(s) 282, 729
MaeIII GTNAC 1 cut(s) 49
MbiI CCGCTC 1 cut(s) 619
MboII GAAGA 7 cut(s) 25, 28, 40, 100, 113, 205, 268
MhlI GDGCHC 1 cut(s) 356
MlsI TGGCCA 1 cut(s) 590
MluCI AATT 2 cut(s) 806, 848
MluNI TGGCCA 1 cut(s) 590
MlyI GAGTC 3 cut(s) 140, 479, 754
MmeI TCCRAC 1 cut(s) 168
Mox20I TGGCCA 1 cut(s) 590
MscI TGGCCA 1 cut(s) 590
Msp20I TGGCCA 1 cut(s) 590
MspA1I CMGCKG 1 cut(s) 864
MspI CCGG 1 cut(s) 521
MspR9I CCNGG 3 cut(s) 323, 350, 478
MvaI CCWGG 3 cut(s) 323, 350, 478
MvnI CGCG 1 cut(s) 399
MwoI GCNNNNNNNGC 8 cut(s) 114, 337, 396, 504, 622, 625, 650, 667
NcoI CCATGG 1 cut(s) 426
NlaIII CATG 5 cut(s) 81, 430, 575, 609, 722
NlaIV GGNNCC 6 cut(s) 58, 309, 432, 449, 782, 799
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 1 cut(s) 609
PaeR7I CTCGAG 1 cut(s) 302
PciI ACATGT 1 cut(s) 605
PcsI WCGNNNNNNNCGW 2 cut(s) 240, 681
PflFI GACNNNGTC 2 cut(s) 242, 827
PfoI TCCNGGA 1 cut(s) 476
PkrI GCNGC 8 cut(s) 175, 339, 376, 550, 618, 627, 769, 877
PleI GAGTC 3 cut(s) 140, 478, 754
PmaCI CACGTG 1 cut(s) 283
PmlI CACGTG 1 cut(s) 283
PpsI GAGTC 3 cut(s) 140, 478, 754
Ppu21I YACGTR 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 307
PscI ACATGT 1 cut(s) 605
Psp5II RGGWCCY 1 cut(s) 307
Psp6I CCWGG 3 cut(s) 321, 348, 476
PspCI CACGTG 1 cut(s) 283
PspFI CCCAGC 1 cut(s) 864
PspGI CCWGG 3 cut(s) 321, 348, 476
PspN4I GGNNCC 6 cut(s) 58, 309, 432, 449, 782, 799
PspPI GGNCC 4 cut(s) 307, 430, 447, 614
PspPPI RGGWCCY 1 cut(s) 307
PspXI VCTCGAGB 1 cut(s) 302
PstI CTGCAG 1 cut(s) 627
PsyI GACNNNGTC 2 cut(s) 242, 827
PvuII CAGCTG 1 cut(s) 864
RsaI GTAC 2 cut(s) 782, 799
RsaNI GTAC 2 cut(s) 781, 798
SatI GCNGC 8 cut(s) 174, 338, 375, 549, 617, 626, 768, 876
Sau96I GGNCC 4 cut(s) 307, 430, 447, 614
SchI GAGTC 3 cut(s) 140, 479, 754
ScrFI CCNGG 3 cut(s) 323, 350, 478
SduI GDGCHC 1 cut(s) 356
SfaNI GCATC 1 cut(s) 126
SfcI CTRYAG 1 cut(s) 623
Sfr274I CTCGAG 1 cut(s) 302
SinI GGWCC 2 cut(s) 307, 430
SlaI CTCGAG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 2 cut(s) 806, 848
SsiI CCGC 7 cut(s) 41, 115, 342, 375, 505, 617, 768
SspMI CTAG 2 cut(s) 332, 630
StyD4I CCNGG 3 cut(s) 321, 348, 476
StyI CCWWGG 2 cut(s) 426, 735
TaaI ACNGT 3 cut(s) 272, 677, 829
TaiI ACGT 2 cut(s) 285, 732
TaqI TCGA 6 cut(s) 216, 231, 258, 303, 465, 489
TasI AATT 2 cut(s) 806, 848
TauI GCSGC 3 cut(s) 377, 619, 770
TscAI CASTG 2 cut(s) 540, 707
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 5 cut(s) 173, 337, 548, 625, 875
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 21
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 2 cut(s) 540, 707
Tth111I GACNNNGTC 2 cut(s) 242, 827
VpaK11BI GGWCC 2 cut(s) 307, 430
XceI RCATGY 1 cut(s) 609
XcmI CCANNNNNNNNNTGG 2 cut(s) 424, 861
XhoI CTCGAG 1 cut(s) 302
XspI CTAG 2 cut(s) 332, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.