Rmu_sc0002408.1_g000014

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002408.1
OG0014331
Physical Location & Seq
Forward (+)
50620 .. 52035
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002408.1_g000014.1.cds

Sequence Viewer

Length: 694 bp
atggcttcttcctcatcggaggcggtgtgcgtgaccggaggcaacggcttcatcggctcgtggctcgtcaagaccctactggagcgcggctacactcgcgtccacgtctccgtctaccccggctccgacgcctcccacctcttctccctccccggcgcctcctccgccaccctcgccgtcttcgaggccgacatcctcgacgccgacgccgtcgccagggccgtcgagaactgcaagggcgtgttccacgtggcgtcgccgtgcaccctcgaggaccccaaagacccccaggcggagctggtgttgcccgccgtgcagggcaccctcaatgtgctgcaggccgcggcgaggttcggcgcgaggcgcgtggtgctcacgtcctccatctcggccatggtccccaaccccggttggccctcccacaaggtcttcgacgagacgtcgtggaccgacctcgattactgcaaatcccgccagaaatggtatcccgtgtcaaagacactagcagagaaagcagcatgggatttcacagagaagaatggattggatgtggtagcaatccatccagccacatgtcttggacctcttctgcagcctggtttgaatgcaagcagtgccgttctgcttaacttgctgcagggatccaaagatacacaagagtatcactggttaggggctgtgcatgtcaaagatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

231

Amino Acids

24.69

Weight (kDa)

5.77

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02400
fragaria_vesca FvH4_5g27181
malus_domestica MD08G1250300.v1.1
prunus_persica Prupe.1G587500_v2.0.a1 Prupe.1G587500_v2.0.a1
pyrus_communis pycom08g21710
rosa_chinensis RchiOBHm_Chr7g0218281
rosa_laevigata RLG00000002382
rosa_multiflora Rmu_co8255051.1_g000001 Rmu_sc0002408.1_g000014 Rmu_sc0004956.1_g000010
rosa_roxburghii Rroxscaffold_3G00241130
rosa_rugosa Rorug07G0176100.1
rosa_samantha Rh7AG317800 Rh7BG309100 Rh7DG316700
rosa_wichuraiana Rw7G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 443
AbsI CCTCGAGG 1 cut(s) 269
AccB1I GGYRCC 2 cut(s) 155, 320
AccI GTMKAC 1 cut(s) 114
AccII CGCG 5 cut(s) 87, 99, 344, 359, 366
AciI CCGC 8 cut(s) 23, 87, 165, 293, 309, 342, 344, 472
AclWI GGATC 2 cut(s) 636, 649
AcoI YGGCCR 1 cut(s) 390
AcvI CACGTG 1 cut(s) 250
AcyI GRCGYC 6 cut(s) 129, 156, 201, 207, 254, 440
AfiI CCNNNNNNNGG 4 cut(s) 216, 292, 348, 407
AflIII ACRYGT 1 cut(s) 572
AgsI TTSAA 1 cut(s) 604
AhdI GACNNNNNGTC 1 cut(s) 439
AjiI CACGTC 2 cut(s) 106, 378
AjnI CCWGG 3 cut(s) 215, 288, 595
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AluBI AGCT 1 cut(s) 298
AluI AGCT 1 cut(s) 298
Alw21I GWGCWC 2 cut(s) 266, 375
Alw26I GTCTC 2 cut(s) 112, 431
Alw44I GTGCAC 1 cut(s) 262
AlwI GGATC 2 cut(s) 636, 649
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 5 cut(s) 186, 219, 339, 390, 413
ApaLI GTGCAC 1 cut(s) 262
ApeKI GCWGC 4 cut(s) 334, 515, 592, 634
AspLEI GCGC 4 cut(s) 87, 158, 359, 366
AspS9I GGNCC 6 cut(s) 219, 274, 397, 414, 447, 581
AsuC2I CCSGG 3 cut(s) 120, 153, 408
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 4 cut(s) 274, 397, 447, 581
BaeGI GKGCMC 2 cut(s) 266, 323
BaeI ACNNNNGTAYC 2 cut(s) 644, 677
BamHI GGATCC 1 cut(s) 641
BanI GGYRCC 2 cut(s) 155, 320
BauI CACGAG 1 cut(s) 58
BbrPI CACGTG 1 cut(s) 250
BbsI GAAGAC 2 cut(s) 172, 421
Bbv12I GWGCWC 2 cut(s) 266, 375
BbvI GCAGC 4 cut(s) 321, 527, 604, 621
BccI CCATC 2 cut(s) 392, 570
BceAI ACGGC 7 cut(s) 61, 161, 194, 206, 244, 296, 602
BciT130I CCWGG 3 cut(s) 217, 290, 597
BciVI GTATCC 1 cut(s) 495
BcnI CCSGG 3 cut(s) 120, 153, 408
BcoDI GTCTC 2 cut(s) 112, 431
BfaI CTAG 1 cut(s) 503
BfmI CTRYAG 3 cut(s) 335, 590, 635
BfoI RGCGCY 1 cut(s) 159
BfuI GTATCC 1 cut(s) 495
BisI GCNGC 7 cut(s) 88, 335, 342, 345, 516, 593, 635
BlsI GCNGC 7 cut(s) 89, 336, 343, 346, 517, 594, 636
Bme1390I CCNGG 6 cut(s) 120, 153, 217, 290, 408, 597
Bme18I GGWCC 4 cut(s) 274, 397, 447, 581
BmeRI GACNNNNNGTC 1 cut(s) 439
BmeT110I CYCGRG 1 cut(s) 269
BmgBI CACGTC 2 cut(s) 106, 378
BmgT120I GGNCC 6 cut(s) 219, 274, 397, 414, 447, 581
BmiI GGNNCC 6 cut(s) 124, 157, 276, 322, 399, 643
BmrFI CCNGG 6 cut(s) 120, 153, 217, 290, 408, 597
BpiI GAAGAC 2 cut(s) 172, 421
BpmI CTGGAG 1 cut(s) 101
BpuMI CCSGG 3 cut(s) 120, 153, 408
BsaAI YACGTR 1 cut(s) 250
BsaHI GRCGYC 6 cut(s) 129, 156, 201, 207, 254, 440
BsaJI CCNNGG 7 cut(s) 118, 151, 216, 288, 342, 393, 406
BsaWI WCCGGW 1 cut(s) 35
BsaXI ACNNNNNCTCC 8 cut(s) 11, 41, 107, 128, 137, 158, 287, 317
Bsc4I CCNNNNNNNGG 4 cut(s) 216, 292, 348, 407
Bse1I ACTGG 2 cut(s) 84, 671
BseBI CCWGG 3 cut(s) 217, 290, 597
BseDI CCNNGG 7 cut(s) 118, 151, 216, 288, 342, 393, 406
BseGI GGATG 3 cut(s) 192, 553, 562
BseLI CCNNNNNNNGG 4 cut(s) 216, 292, 348, 407
BseNI ACTGG 2 cut(s) 84, 671
BseRI GAGGAG 1 cut(s) 151
BseSI GKGCMC 2 cut(s) 266, 323
BseXI GCAGC 4 cut(s) 321, 527, 604, 621
BsgI GTGCAG 1 cut(s) 335
Bsh1236I CGCG 5 cut(s) 87, 99, 344, 359, 366
BshFI GGCC 5 cut(s) 188, 221, 341, 392, 415
BshNI GGYRCC 2 cut(s) 155, 320
BsiHKAI GWGCWC 2 cut(s) 266, 375
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 4 cut(s) 36, 120, 153, 408
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 4 cut(s) 216, 292, 348, 407
BsmAI GTCTC 2 cut(s) 112, 431
BsmBI CGTCTC 2 cut(s) 112, 431
BsmFI GGGAC 1 cut(s) 383
BsmI GAATGC 1 cut(s) 610
BsnI GGCC 5 cut(s) 188, 221, 341, 392, 415
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 3 cut(s) 266, 323, 375
Bsp143I GATC 1 cut(s) 641
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 8 cut(s) 23, 87, 165, 293, 309, 342, 344, 472
BspANI GGCC 5 cut(s) 188, 221, 341, 392, 415
BspFNI CGCG 5 cut(s) 87, 99, 344, 359, 366
BspLI GGNNCC 6 cut(s) 124, 157, 276, 322, 399, 643
BspMAI CTGCAG 3 cut(s) 339, 594, 639
BspPI GGATC 2 cut(s) 636, 649
BspT107I GGYRCC 2 cut(s) 155, 320
BsrI ACTGG 2 cut(s) 84, 671
BssECI CCNNGG 7 cut(s) 118, 151, 216, 288, 342, 393, 406
BssMI GATC 1 cut(s) 641
BssNI GRCGYC 6 cut(s) 129, 156, 201, 207, 254, 440
BssSI CACGAG 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 393
Bst2BI CACGAG 1 cut(s) 58
Bst2UI CCWGG 3 cut(s) 217, 290, 597
Bst6I CTCTTC 2 cut(s) 146, 591
BstACI GRCGYC 6 cut(s) 129, 156, 201, 207, 254, 440
BstAPI GCANNNNNTGC 1 cut(s) 614
BstBAI YACGTR 1 cut(s) 250
BstC8I GCNNGC 3 cut(s) 309, 339, 610
BstDSI CCRYGG 2 cut(s) 342, 393
BstF5I GGATG 3 cut(s) 192, 553, 562
BstFNI CGCG 5 cut(s) 87, 99, 344, 359, 366
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 4 cut(s) 87, 158, 359, 366
BstKTI GATC 1 cut(s) 644
BstMAI GTCTC 2 cut(s) 112, 431
BstMBI GATC 1 cut(s) 641
BstNI CCWGG 3 cut(s) 217, 290, 597
BstNSI RCATGY 2 cut(s) 576, 686
BstSCI CCNGG 6 cut(s) 118, 151, 215, 288, 406, 595
BstSFI CTRYAG 3 cut(s) 335, 590, 635
BstSLI GKGCMC 2 cut(s) 266, 323
BstUI CGCG 5 cut(s) 87, 99, 344, 359, 366
BstV1I GCAGC 4 cut(s) 321, 527, 604, 621
BstV2I GAAGAC 2 cut(s) 172, 421
BstX2I RGATCY 1 cut(s) 641
BstYI RGATCY 1 cut(s) 641
BsuI GTATCC 1 cut(s) 495
BsuRI GGCC 5 cut(s) 188, 221, 341, 392, 415
BtgI CCRYGG 2 cut(s) 342, 393
BtrI CACGTC 2 cut(s) 106, 378
BtsCI GGATG 3 cut(s) 192, 553, 562
BtsI GCAGTG 1 cut(s) 619
BtsIMutI CAGTG 2 cut(s) 619, 664
Cac8I GCNNGC 3 cut(s) 309, 339, 610
CfoI GCGC 4 cut(s) 87, 158, 359, 366
Cfr13I GGNCC 6 cut(s) 219, 274, 397, 414, 447, 581
Cfr42I CCGCGG 1 cut(s) 345
CseI GACGC 5 cut(s) 88, 137, 209, 215, 243
CspCI CAANNNNNGTGG 2 cut(s) 559, 594
CviAII CATG 4 cut(s) 394, 519, 573, 683
DinI GGCGCC 1 cut(s) 157
DpnI GATC 1 cut(s) 643
DpnII GATC 1 cut(s) 641
DriI GACNNNNNGTC 1 cut(s) 439
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 2 cut(s) 146, 591
Eam1105I GACNNNNNGTC 1 cut(s) 439
EarI CTCTTC 2 cut(s) 146, 591
EciI GGCGGA 2 cut(s) 154, 308
Eco130I CCWWGG 1 cut(s) 393
Eco47I GGWCC 4 cut(s) 274, 397, 447, 581
Eco72I CACGTG 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 274
EcoRII CCWGG 3 cut(s) 215, 288, 595
EcoT14I CCWWGG 1 cut(s) 393
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 393
Esp3I CGTCTC 2 cut(s) 112, 431
FaeI CATG 4 cut(s) 397, 522, 576, 686
FaiI YATR 4 cut(s) 395, 520, 574, 684
FaqI GGGAC 1 cut(s) 383
FatI CATG 4 cut(s) 393, 518, 572, 682
FauI CCCGC 2 cut(s) 316, 479
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 7 cut(s) 88, 335, 342, 345, 516, 593, 635
FokI GGATG 3 cut(s) 179, 549, 560
Fsp4HI GCNGC 7 cut(s) 88, 335, 342, 345, 516, 593, 635
FspBI CTAG 1 cut(s) 503
GlaI GCGC 4 cut(s) 86, 157, 358, 365
GluI GCNGC 7 cut(s) 88, 335, 342, 345, 516, 593, 635
GsuI CTGGAG 1 cut(s) 101
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 5 cut(s) 188, 221, 341, 392, 415
HapII CCGG 4 cut(s) 36, 120, 153, 408
HgaI GACGC 5 cut(s) 88, 137, 209, 215, 243
HhaI GCGC 4 cut(s) 87, 158, 359, 366
Hin1I GRCGYC 6 cut(s) 129, 156, 201, 207, 254, 440
Hin1II CATG 4 cut(s) 397, 522, 576, 686
Hin6I GCGC 4 cut(s) 85, 156, 357, 364
HinP1I GCGC 4 cut(s) 85, 156, 357, 364
HpaII CCGG 4 cut(s) 36, 120, 153, 408
Hpy166II GTNNAC 4 cut(s) 103, 115, 264, 447
Hpy188I TCNGA 2 cut(s) 19, 127
Hpy188III TCNNGA 2 cut(s) 70, 226
Hpy8I GTNNAC 4 cut(s) 103, 115, 264, 447
Hpy99I CGWCG 8 cut(s) 131, 203, 209, 215, 227, 259, 437, 445
HpyCH4IV ACGT 4 cut(s) 105, 249, 377, 440
HpyCH4V TGCA 9 cut(s) 234, 264, 316, 337, 465, 592, 608, 637, 682
HpySE526I ACGT 4 cut(s) 105, 249, 377, 440
Hsp92I GRCGYC 6 cut(s) 129, 156, 201, 207, 254, 440
Hsp92II CATG 4 cut(s) 397, 522, 576, 686
HspAI GCGC 4 cut(s) 85, 156, 357, 364
KasI GGCGCC 1 cut(s) 155
KspI CCGCGG 1 cut(s) 345
Kzo9I GATC 1 cut(s) 641
LmnI GCTCC 3 cut(s) 82, 128, 295
Lsp1109I GCAGC 4 cut(s) 321, 527, 604, 621
MaeI CTAG 1 cut(s) 503
MaeII ACGT 4 cut(s) 105, 249, 377, 440
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 643
MboI GATC 1 cut(s) 641
MboII GAAGA 5 cut(s) 133, 172, 421, 547, 578
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 3 cut(s) 266, 323, 375
Mly113I GGCGCC 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 150
MseI TTAA 1 cut(s) 627
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 4 cut(s) 36, 120, 153, 408
MspR9I CCNGG 6 cut(s) 120, 153, 217, 290, 408, 597
Mva1269I GAATGC 1 cut(s) 610
MvaI CCWGG 3 cut(s) 217, 290, 597
MvnI CGCG 5 cut(s) 87, 99, 344, 359, 366
NarI GGCGCC 1 cut(s) 156
NciI CCSGG 3 cut(s) 120, 153, 408
NcoI CCATGG 1 cut(s) 393
NdeII GATC 1 cut(s) 641
NlaIII CATG 4 cut(s) 397, 522, 576, 686
NlaIV GGNNCC 6 cut(s) 124, 157, 276, 322, 399, 643
NmeAIII GCCGAG 1 cut(s) 368
NmuCI GTSAC 1 cut(s) 31
NspI RCATGY 2 cut(s) 576, 686
PaeR7I CTCGAG 1 cut(s) 269
PciI ACATGT 1 cut(s) 572
PcsI WCGNNNNNNNCGW 3 cut(s) 180, 207, 219
PctI GAATGC 1 cut(s) 610
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 7 cut(s) 89, 336, 343, 346, 517, 594, 636
PluTI GGCGCC 1 cut(s) 159
PmaCI CACGTG 1 cut(s) 250
PmlI CACGTG 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 250
PpuMI RGGWCCY 1 cut(s) 274
PscI ACATGT 1 cut(s) 572
Psp5II RGGWCCY 1 cut(s) 274
Psp6I CCWGG 3 cut(s) 215, 288, 595
PspCI CACGTG 1 cut(s) 250
PspGI CCWGG 3 cut(s) 215, 288, 595
PspN4I GGNNCC 6 cut(s) 124, 157, 276, 322, 399, 643
PspPI GGNCC 6 cut(s) 219, 274, 397, 414, 447, 581
PspPPI RGGWCCY 1 cut(s) 274
PspXI VCTCGAGB 1 cut(s) 269
PstI CTGCAG 3 cut(s) 339, 594, 639
PsuI RGATCY 1 cut(s) 641
PsyI GACNNNGTC 1 cut(s) 209
SacII CCGCGG 1 cut(s) 345
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 7 cut(s) 88, 335, 342, 345, 516, 593, 635
Sau3AI GATC 1 cut(s) 641
Sau96I GGNCC 6 cut(s) 219, 274, 397, 414, 447, 581
ScrFI CCNGG 6 cut(s) 120, 153, 217, 290, 408, 597
SduI GDGCHC 3 cut(s) 266, 323, 375
SfcI CTRYAG 3 cut(s) 335, 590, 635
SfoI GGCGCC 1 cut(s) 157
Sfr274I CTCGAG 1 cut(s) 269
Sfr303I CCGCGG 1 cut(s) 345
SgrBI CCGCGG 1 cut(s) 345
SinI GGWCC 4 cut(s) 274, 397, 447, 581
SlaI CTCGAG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SsiI CCGC 8 cut(s) 23, 87, 165, 293, 309, 342, 344, 472
SspDI GGCGCC 1 cut(s) 155
SspMI CTAG 1 cut(s) 503
StyD4I CCNGG 6 cut(s) 118, 151, 215, 288, 406, 595
StyI CCWWGG 1 cut(s) 393
TaiI ACGT 4 cut(s) 108, 252, 380, 443
TaqI TCGA 6 cut(s) 183, 198, 225, 270, 432, 456
TaqII GACCGA 1 cut(s) 464
TauI GCSGC 3 cut(s) 90, 344, 347
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 2 cut(s) 619, 671
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 4 cut(s) 334, 515, 592, 634
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 40
TspGWI ACGGA 1 cut(s) 100
TspRI CASTG 2 cut(s) 619, 671
Tth111I GACNNNGTC 1 cut(s) 209
VneI GTGCAC 1 cut(s) 262
VpaK11BI GGWCC 4 cut(s) 274, 397, 447, 581
XceI RCATGY 2 cut(s) 576, 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XhoI CTCGAG 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 1 cut(s) 503
ZraI GACGTC 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.