Rmu_co8255051.1_g000001

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8255051.1
OG0014331
Physical Location & Seq
Forward (+)
1 .. 443
443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8255051.1_g000001.1.cds

Sequence Viewer

Length: 443 bp
ctcgcgtccacgtctccgtctaccccggctccgacgcctcccacctcttctccctccccggcgcctcctccgccaccctcgccgtcttcgaggccgacatcctcgacgccggcgccgtcgccagggccgtcgagaactgcaagggcgtgttccacgtggcgtcgccgtgcaccctcgaggaccccaaagacccccaggcggagctggtgttgcccgccgtgcagggcaccctcaatgtgctgcaggccgcggcgaggttcggcgcgaggcgcgtggtgctcacgtcctccatctcggccatggtccccaaccccggttggccctcccacaaggtcttcgacgagacgtcgtggaccgacctcgattactgcaaatcccgccaggtcacttctctctctctctcgctaatcaagattattcagtatatgttttgctataggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

146

Amino Acids

15.75

Weight (kDa)

6.45

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02400
fragaria_vesca FvH4_5g27181
malus_domestica MD08G1250300.v1.1
prunus_persica Prupe.1G587500_v2.0.a1 Prupe.1G587500_v2.0.a1
pyrus_communis pycom08g21710
rosa_chinensis RchiOBHm_Chr7g0218281
rosa_laevigata RLG00000002382
rosa_multiflora Rmu_co8255051.1_g000001 Rmu_sc0002408.1_g000014 Rmu_sc0004956.1_g000010
rosa_roxburghii Rroxscaffold_3G00241130
rosa_rugosa Rorug07G0176100.1
rosa_samantha Rh7AG317800 Rh7BG309100 Rh7DG316700
rosa_wichuraiana Rw7G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 349
AbsI CCTCGAGG 1 cut(s) 175
AccB1I GGYRCC 3 cut(s) 61, 112, 226
AccI GTMKAC 1 cut(s) 20
AccII CGCG 4 cut(s) 5, 250, 265, 272
AciI CCGC 6 cut(s) 71, 199, 215, 248, 250, 378
AcoI YGGCCR 1 cut(s) 296
AcvI CACGTG 1 cut(s) 156
AcyI GRCGYC 6 cut(s) 35, 62, 107, 113, 160, 346
AfiI CCNNNNNNNGG 4 cut(s) 122, 198, 254, 313
AhdI GACNNNNNGTC 1 cut(s) 345
AjiI CACGTC 2 cut(s) 12, 284
AjnI CCWGG 3 cut(s) 121, 194, 380
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
Alw21I GWGCWC 2 cut(s) 172, 281
Alw26I GTCTC 2 cut(s) 18, 337
Alw44I GTGCAC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 5 cut(s) 92, 125, 245, 296, 319
ApaLI GTGCAC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 240
AspLEI GCGC 4 cut(s) 64, 115, 265, 272
AspS9I GGNCC 5 cut(s) 125, 180, 303, 320, 353
AsuC2I CCSGG 3 cut(s) 26, 59, 314
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 3 cut(s) 180, 303, 353
BaeGI GKGCMC 2 cut(s) 172, 229
BanI GGYRCC 3 cut(s) 61, 112, 226
BbrPI CACGTG 1 cut(s) 156
BbsI GAAGAC 2 cut(s) 78, 327
Bbv12I GWGCWC 2 cut(s) 172, 281
BbvI GCAGC 1 cut(s) 227
BccI CCATC 1 cut(s) 298
BceAI ACGGC 5 cut(s) 67, 100, 112, 150, 202
BciT130I CCWGG 3 cut(s) 123, 196, 382
BcnI CCSGG 3 cut(s) 26, 59, 314
BcoDI GTCTC 2 cut(s) 18, 337
BfmI CTRYAG 2 cut(s) 241, 435
BfoI RGCGCY 2 cut(s) 65, 116
BisI GCNGC 3 cut(s) 241, 248, 251
BlsI GCNGC 3 cut(s) 242, 249, 252
Bme1390I CCNGG 6 cut(s) 26, 59, 123, 196, 314, 382
Bme18I GGWCC 3 cut(s) 180, 303, 353
BmeRI GACNNNNNGTC 1 cut(s) 345
BmeT110I CYCGRG 1 cut(s) 175
BmgBI CACGTC 2 cut(s) 12, 284
BmgT120I GGNCC 5 cut(s) 125, 180, 303, 320, 353
BmiI GGNNCC 6 cut(s) 30, 63, 114, 182, 228, 305
BmrFI CCNGG 6 cut(s) 26, 59, 123, 196, 314, 382
BpiI GAAGAC 2 cut(s) 78, 327
BpuMI CCSGG 3 cut(s) 26, 59, 314
BsaAI YACGTR 1 cut(s) 156
BsaHI GRCGYC 6 cut(s) 35, 62, 107, 113, 160, 346
BsaJI CCNNGG 7 cut(s) 24, 57, 122, 194, 248, 299, 312
BsaXI ACNNNNNCTCC 6 cut(s) 13, 34, 43, 64, 193, 223
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 198, 254, 313
Bse118I RCCGGY 1 cut(s) 109
BseBI CCWGG 3 cut(s) 123, 196, 382
BseDI CCNNGG 7 cut(s) 24, 57, 122, 194, 248, 299, 312
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 4 cut(s) 122, 198, 254, 313
BseRI GAGGAG 1 cut(s) 57
BseSI GKGCMC 2 cut(s) 172, 229
BseXI GCAGC 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 241
Bsh1236I CGCG 4 cut(s) 5, 250, 265, 272
BshFI GGCC 5 cut(s) 94, 127, 247, 298, 321
BshNI GGYRCC 3 cut(s) 61, 112, 226
BsiHKAI GWGCWC 2 cut(s) 172, 281
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 4 cut(s) 26, 59, 110, 314
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 4 cut(s) 122, 198, 254, 313
BsmAI GTCTC 2 cut(s) 18, 337
BsmBI CGTCTC 2 cut(s) 18, 337
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 5 cut(s) 94, 127, 247, 298, 321
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 3 cut(s) 172, 229, 281
Bsp19I CCATGG 1 cut(s) 299
BspACI CCGC 6 cut(s) 71, 199, 215, 248, 250, 378
BspANI GGCC 5 cut(s) 94, 127, 247, 298, 321
BspFNI CGCG 4 cut(s) 5, 250, 265, 272
BspLI GGNNCC 6 cut(s) 30, 63, 114, 182, 228, 305
BspMAI CTGCAG 1 cut(s) 245
BspT107I GGYRCC 3 cut(s) 61, 112, 226
BsrFI RCCGGY 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 7 cut(s) 24, 57, 122, 194, 248, 299, 312
BssNI GRCGYC 6 cut(s) 35, 62, 107, 113, 160, 346
BssT1I CCWWGG 1 cut(s) 299
Bst2UI CCWGG 3 cut(s) 123, 196, 382
Bst6I CTCTTC 1 cut(s) 52
BstACI GRCGYC 6 cut(s) 35, 62, 107, 113, 160, 346
BstBAI YACGTR 1 cut(s) 156
BstC8I GCNNGC 3 cut(s) 111, 215, 245
BstDSI CCRYGG 2 cut(s) 248, 299
BstF5I GGATG 1 cut(s) 98
BstFNI CGCG 4 cut(s) 5, 250, 265, 272
BstH2I RGCGCY 2 cut(s) 65, 116
BstHHI GCGC 4 cut(s) 64, 115, 265, 272
BstMAI GTCTC 2 cut(s) 18, 337
BstMWI GCNNNNNNNGC 7 cut(s) 70, 79, 210, 219, 269, 276, 377
BstNI CCWGG 3 cut(s) 123, 196, 382
BstSCI CCNGG 6 cut(s) 24, 57, 121, 194, 312, 380
BstSFI CTRYAG 2 cut(s) 241, 435
BstSLI GKGCMC 2 cut(s) 172, 229
BstUI CGCG 4 cut(s) 5, 250, 265, 272
BstV1I GCAGC 1 cut(s) 227
BstV2I GAAGAC 2 cut(s) 78, 327
BsuRI GGCC 5 cut(s) 94, 127, 247, 298, 321
BtgI CCRYGG 2 cut(s) 248, 299
BtrI CACGTC 2 cut(s) 12, 284
BtsCI GGATG 1 cut(s) 98
Cac8I GCNNGC 3 cut(s) 111, 215, 245
CfoI GCGC 4 cut(s) 64, 115, 265, 272
Cfr10I RCCGGY 1 cut(s) 109
Cfr13I GGNCC 5 cut(s) 125, 180, 303, 320, 353
Cfr42I CCGCGG 1 cut(s) 251
CseI GACGC 3 cut(s) 43, 115, 149
CviAII CATG 1 cut(s) 300
CviJI RGCY 7 cut(s) 29, 94, 127, 204, 247, 298, 321
CviKI_1 RGCY 7 cut(s) 29, 94, 127, 204, 247, 298, 321
DinI GGCGCC 2 cut(s) 63, 114
DriI GACNNNNNGTC 1 cut(s) 345
EaeI YGGCCR 1 cut(s) 296
Eam1104I CTCTTC 1 cut(s) 52
Eam1105I GACNNNNNGTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 52
EciI GGCGGA 2 cut(s) 60, 214
Eco130I CCWWGG 1 cut(s) 299
Eco47I GGWCC 3 cut(s) 180, 303, 353
Eco72I CACGTG 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 180
EcoRII CCWGG 3 cut(s) 121, 194, 380
EcoT14I CCWWGG 1 cut(s) 299
EgeI GGCGCC 2 cut(s) 63, 114
EheI GGCGCC 2 cut(s) 63, 114
ErhI CCWWGG 1 cut(s) 299
Esp3I CGTCTC 2 cut(s) 18, 337
FaeI CATG 1 cut(s) 303
FaiI YATR 4 cut(s) 301, 425, 427, 437
FaqI GGGAC 1 cut(s) 289
FatI CATG 1 cut(s) 299
FauI CCCGC 2 cut(s) 222, 385
FblI GTMKAC 1 cut(s) 20
Fnu4HI GCNGC 3 cut(s) 241, 248, 251
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 3 cut(s) 241, 248, 251
GlaI GCGC 4 cut(s) 63, 114, 264, 271
GluI GCNGC 3 cut(s) 241, 248, 251
HaeII RGCGCY 2 cut(s) 65, 116
HaeIII GGCC 5 cut(s) 94, 127, 247, 298, 321
HapII CCGG 4 cut(s) 26, 59, 110, 314
HgaI GACGC 3 cut(s) 43, 115, 149
HhaI GCGC 4 cut(s) 64, 115, 265, 272
Hin1I GRCGYC 6 cut(s) 35, 62, 107, 113, 160, 346
Hin1II CATG 1 cut(s) 303
Hin6I GCGC 4 cut(s) 62, 113, 263, 270
HinP1I GCGC 4 cut(s) 62, 113, 263, 270
HpaII CCGG 4 cut(s) 26, 59, 110, 314
Hpy166II GTNNAC 4 cut(s) 9, 21, 170, 353
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 2 cut(s) 132, 411
Hpy8I GTNNAC 4 cut(s) 9, 21, 170, 353
Hpy99I CGWCG 7 cut(s) 37, 109, 121, 133, 165, 343, 351
HpyCH4IV ACGT 4 cut(s) 11, 155, 283, 346
HpyCH4V TGCA 5 cut(s) 140, 170, 222, 243, 371
HpyF10VI GCNNNNNNNGC 7 cut(s) 70, 79, 210, 219, 269, 276, 377
HpySE526I ACGT 4 cut(s) 11, 155, 283, 346
Hsp92I GRCGYC 6 cut(s) 35, 62, 107, 113, 160, 346
Hsp92II CATG 1 cut(s) 303
HspAI GCGC 4 cut(s) 62, 113, 263, 270
KasI GGCGCC 2 cut(s) 61, 112
KroI GCCGGC 1 cut(s) 109
KroNI GCCGGC 1 cut(s) 111
KspI CCGCGG 1 cut(s) 251
LmnI GCTCC 2 cut(s) 34, 201
Lsp1109I GCAGC 1 cut(s) 227
MaeII ACGT 4 cut(s) 11, 155, 283, 346
MaeIII GTNAC 1 cut(s) 384
MboII GAAGA 3 cut(s) 39, 78, 327
MhlI GDGCHC 3 cut(s) 172, 229, 281
Mly113I GGCGCC 2 cut(s) 62, 113
MmeI TCCRAC 1 cut(s) 56
MreI CGCCGGCG 1 cut(s) 109
MroNI GCCGGC 1 cut(s) 109
MspA1I CMGCKG 1 cut(s) 250
MspI CCGG 4 cut(s) 26, 59, 110, 314
MspR9I CCNGG 6 cut(s) 26, 59, 123, 196, 314, 382
MvaI CCWGG 3 cut(s) 123, 196, 382
MvnI CGCG 4 cut(s) 5, 250, 265, 272
MwoI GCNNNNNNNGC 7 cut(s) 70, 79, 210, 219, 269, 276, 377
NaeI GCCGGC 1 cut(s) 111
NarI GGCGCC 2 cut(s) 62, 113
NciI CCSGG 3 cut(s) 26, 59, 314
NcoI CCATGG 1 cut(s) 299
NgoMIV GCCGGC 1 cut(s) 109
NlaIII CATG 1 cut(s) 303
NlaIV GGNNCC 6 cut(s) 30, 63, 114, 182, 228, 305
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 384
PaeR7I CTCGAG 1 cut(s) 175
PcsI WCGNNNNNNNCGW 3 cut(s) 86, 113, 125
PdiI GCCGGC 1 cut(s) 111
PkrI GCNGC 3 cut(s) 242, 249, 252
PluTI GGCGCC 2 cut(s) 65, 116
PmaCI CACGTG 1 cut(s) 156
PmlI CACGTG 1 cut(s) 156
Ppu21I YACGTR 1 cut(s) 156
PpuMI RGGWCCY 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 180
Psp6I CCWGG 3 cut(s) 121, 194, 380
PspCI CACGTG 1 cut(s) 156
PspGI CCWGG 3 cut(s) 121, 194, 380
PspN4I GGNNCC 6 cut(s) 30, 63, 114, 182, 228, 305
PspPI GGNCC 5 cut(s) 125, 180, 303, 320, 353
PspPPI RGGWCCY 1 cut(s) 180
PspXI VCTCGAGB 1 cut(s) 175
PstI CTGCAG 1 cut(s) 245
SacII CCGCGG 1 cut(s) 251
SatI GCNGC 3 cut(s) 241, 248, 251
Sau96I GGNCC 5 cut(s) 125, 180, 303, 320, 353
ScrFI CCNGG 6 cut(s) 26, 59, 123, 196, 314, 382
SduI GDGCHC 3 cut(s) 172, 229, 281
SfcI CTRYAG 2 cut(s) 241, 435
SfoI GGCGCC 2 cut(s) 63, 114
Sfr274I CTCGAG 1 cut(s) 175
Sfr303I CCGCGG 1 cut(s) 251
SgrAI CRCCGGYG 1 cut(s) 109
SgrBI CCGCGG 1 cut(s) 251
SinI GGWCC 3 cut(s) 180, 303, 353
SlaI CTCGAG 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
SsiI CCGC 6 cut(s) 71, 199, 215, 248, 250, 378
SspDI GGCGCC 2 cut(s) 61, 112
StyD4I CCNGG 6 cut(s) 24, 57, 121, 194, 312, 380
StyI CCWWGG 1 cut(s) 299
TaiI ACGT 4 cut(s) 14, 158, 286, 349
TaqI TCGA 6 cut(s) 89, 104, 131, 176, 338, 362
TaqII GACCGA 1 cut(s) 370
TauI GCSGC 2 cut(s) 250, 253
TseFI GTSAC 1 cut(s) 384
TseI GCWGC 1 cut(s) 240
Tsp45I GTSAC 1 cut(s) 384
TspGWI ACGGA 1 cut(s) 6
VneI GTGCAC 1 cut(s) 168
VpaK11BI GGWCC 3 cut(s) 180, 303, 353
XcmI CCANNNNNNNNNTGG 1 cut(s) 297
XhoI CTCGAG 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 20
ZraI GACGTC 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.