Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008001

Physical Location & Seq

Genomic Coordinates Forward (+)

1717833 .. 1720526

Gene Structure 2694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G04880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGCTGAGGTGGGAAAAGTTCTGGCTAGTGATATGGAGTTAGACCATTCAAATGAGACTAAAGCAGTGGATGATGTTGTTGCCACTACTGATAAAGCGGAGGTCATACCAGTGGCTGTAACTAGAACTGAAACCGTTGTTGAAAGTTTGGAATCTACTGACTGTAAGGAGCTTGAAAAACTTGTTCCACATACGGTAGCTTCGCAGTCGGAAGTAGATGTTGCTTCCCCGGTATCCGAGAAAGCACCGAAGGTTTCTGAAAGTAGCGGTGCATTATCTTTGCAGTCTGGTTCGGAAGGGAATAGTCCTTTTATTCGTGAGAAGGTTATGGAAGACGGATACAACTGGCGGAAATATGGACAGAAACTTGTGAAAGGAAATGAGTTTGTAAGGAGCTATTACAGGTGCACTCACCCTAACTGCAAAGCGAAAAAACAGTTGGAACGGTCTGCGGGTGGACAAGTCGTGGATACCGTTTACTTTGGGGAACATGATCACCCAAAGCCTCTTGCTGGTGCTGTTCCTATCAATCAGGATAAGCGAAGTGATGTCTTCACAGCTGTTAGTAAAGGTGAACAAAGAATAGATATAGTTTCTCTAATTTATAAGCTGTGCATTGTTTCTTATGATATCATGTTTGTAGAGAAAACATCTGGATCCAGTGTTCAGACACTTCGTCAAACCGAACCACCAAAGATCCATGGAGGATTACATGTTTCAGTTATTCCACCAGCTGATGATGTGAAAACTGATATTTCACAATCAAGTAGGATAACGGGGGACAACACTCACAAGGATTATAATAGTCCTACCGCAAAGCGAAGGAAGAAAGGAGGGAACATTGAGCTGAGTCCAGTGGAGAGGTCAACCAATGATTCACGCATTGTGGTTCACACTCAGACTCTGTTTGATATTGTGAATGATGGGTACCGATGGCGTAAATATGGTCAGAAATCAGTAAAAGGCAGCCCATATCCAAGGAGCTACTATAGATGTTCAAGCCCTGGATGCCCCGTCAAGAAACACGTAGAGAGGTCATCTCATGACACAAAGTTGCTTATAACAACTTACGAGGGAAAACACGACCACGATATGCCTCCAGGAAGAGTTGTTACTCATAATAACATGCTGGACTCGGAAGTTGATGATAAAGAAGGAGATGCCAACAAGACTCCACAGAGCTCAACTCTTCAATCCATTACAAAAGACCAGCATGTCGAAGATCACTTAAGAAAGAAAACGAAGACTAATGGCTTTGAGAAAAGTCTTGATCAAGGTCCAGTTTTGGATGAGAAGCTGAAGGAGGAAATAAAAGAGAGATCAGATGCAAACAAAGATCACGCAGCCAATCACGCCAAGCCGGAAGCAAAGTCAGATGATAAAACCACTGTTTGTCAAGAGAAGGCAGTAGGAACCCTGGAGAGCGAGGAACAAAAACCCAAGACAGAGCCTGCCCAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009751 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043565 GO:0045893 GO:0045935 GO:0046677 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

487

Amino Acids

54.01

Weight (kDa)

6.43

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	111 - 167	2e-24	WRKY DNA -binding domain
WRKY	PF03106	307 - 364	4.7e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04880 AT2G04880
fragaria_vesca	FvH4_6g41210
malus_domestica	MD09G1121600.v1.1 MD17G1112600.v1.1
prunus_persica	Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1
pyrus_communis	pycom09g04600 pycom17g10430
rosa_chinensis	RchiOBHm_Chr2g0156771
rosa_laevigata	RLG00000020940
rosa_multiflora	Rmu_sc0008149.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092740
rosa_rugosa	Rorug02G0456100 Rorug02G0456100
rosa_samantha	Rh2AG521500 Rh2BG535000 Rh2CG506400 Rh2DG544000
rosa_wichuraiana	Rw2G043060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	606, 801, 1061
AasI	GACNNNNNNGTC	1 cut(s)	1214
Acc65I	GGTACC	1 cut(s)	927
AccB1I	GGYRCC	1 cut(s)	927
AciI	CCGC	5 cut(s)	98, 267, 349, 452, 813
AclWI	GGATC	3 cut(s)	651, 664, 691
AcuI	CTGAAG	1 cut(s)	1319
AfaI	GTAC	1 cut(s)	929
AfiI	CCNNNNNNNGG	1 cut(s)	512
AflII	CTTAAG	1 cut(s)	1228
AflIII	ACRYGT	2 cut(s)	712, 1024
AgsI	TTSAA	5 cut(s)	51, 143, 176, 999, 1193
AhdI	GACNNNNNGTC	1 cut(s)	675
AjnI	CCWGG	3 cut(s)	1003, 1099, 1416
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AloI	GAACNNNNNNTCC	2 cut(s)	648, 680
Alw21I	GWGCWC	2 cut(s)	410, 1184
Alw26I	GTCTC	1 cut(s)	50
Alw44I	GTGCAC	1 cut(s)	406
AlwI	GGATC	3 cut(s)	651, 664, 691
AlwNI	CAGNNNCTG	3 cut(s)	116, 904, 1451
ApaLI	GTGCAC	1 cut(s)	406
ApeKI	GCWGC	2 cut(s)	966, 1343
Asp718I	GGTACC	1 cut(s)	927
AspS9I	GGNCC	1 cut(s)	1277
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	3 cut(s)	404, 488, 584
AvaII	GGWCC	1 cut(s)	1277
BaeGI	GKGCMC	1 cut(s)	410
BamHI	GGATCC	1 cut(s)	656
BanI	GGYRCC	1 cut(s)	927
BanII	GRGCYC	1 cut(s)	1184
BarI	GAAGNNNNNNTAC	2 cut(s)	1096, 1128
BbsI	GAAGAC	3 cut(s)	339, 544, 1250
Bbv12I	GWGCWC	2 cut(s)	410, 1184
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	978, 1355
BccI	CCATC	2 cut(s)	917, 927
BciT130I	CCWGG	3 cut(s)	1005, 1101, 1418
BciVI	GTATCC	3 cut(s)	244, 332, 463
BclI	TGATCA	2 cut(s)	493, 1270
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	2 cut(s)	27, 123
BfmI	CTRYAG	1 cut(s)	988
BfrI	CTTAAG	1 cut(s)	1228
BfuI	GTATCC	3 cut(s)	244, 332, 463
BisI	GCNGC	2 cut(s)	967, 1344
BlsI	GCNGC	2 cut(s)	968, 1345
Bme1390I	CCNGG	4 cut(s)	230, 1005, 1101, 1418
Bme18I	GGWCC	1 cut(s)	1277
BmeRI	GACNNNNNGTC	1 cut(s)	675
BmgT120I	GGNCC	1 cut(s)	1277
BmiI	GGNNCC	3 cut(s)	658, 929, 1414
BmrFI	CCNGG	4 cut(s)	230, 1005, 1101, 1418
BmsI	GCATC	3 cut(s)	998, 1150, 1315
BpiI	GAAGAC	3 cut(s)	339, 544, 1250
BplI	GAGNNNNNCTC	4 cut(s)	1024, 1056, 1171, 1203
BpmI	CTGGAG	2 cut(s)	1083, 1439
Bpu10I	CCTNAGC	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	230
BsaAI	YACGTR	1 cut(s)	1027
BsaJI	CCNNGG	5 cut(s)	228, 700, 977, 1003, 1416
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse1I	ACTGG	5 cut(s)	110, 350, 660, 854, 1280
BseBI	CCWGG	3 cut(s)	1005, 1101, 1418
BseDI	CCNNGG	5 cut(s)	228, 700, 977, 1003, 1416
BseGI	GGATG	3 cut(s)	76, 1013, 1294
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMII	CTCAG	2 cut(s)	839, 911
BseNI	ACTGG	5 cut(s)	110, 350, 660, 854, 1280
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	978, 1355
BshNI	GGYRCC	1 cut(s)	927
BsiHKAI	GWGCWC	2 cut(s)	410, 1184
BsiSI	CCGG	2 cut(s)	230, 1361
BslFI	GGGAC	1 cut(s)	794
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	794
Bsp1286I	GDGCHC	2 cut(s)	410, 1184
Bsp143I	GATC	7 cut(s)	493, 656, 696, 1222, 1270, 1319, 1336
Bsp19I	CCATGG	1 cut(s)	700
BspACI	CCGC	5 cut(s)	98, 267, 349, 452, 813
BspCNI	CTCAG	2 cut(s)	840, 910
BspHI	TCATGA	1 cut(s)	1042
BspLI	GGNNCC	3 cut(s)	658, 929, 1414
BspPI	GGATC	3 cut(s)	651, 664, 691
BspT107I	GGYRCC	1 cut(s)	927
BspTI	CTTAAG	1 cut(s)	1228
BsrI	ACTGG	5 cut(s)	110, 350, 660, 854, 1280
BssECI	CCNNGG	5 cut(s)	228, 700, 977, 1003, 1416
BssMI	GATC	7 cut(s)	493, 656, 696, 1222, 1270, 1319, 1336
BssT1I	CCWWGG	2 cut(s)	700, 977
Bst2UI	CCWGG	3 cut(s)	1005, 1101, 1418
Bst4CI	ACNGT	7 cut(s)	136, 164, 196, 438, 447, 475, 1390
Bst6I	CTCTTC	2 cut(s)	1099, 1194
BstAFI	CTTAAG	1 cut(s)	1228
BstBAI	YACGTR	1 cut(s)	1027
BstC8I	GCNNGC	1 cut(s)	1452
BstDEI	CTNAG	3 cut(s)	6, 848, 897
BstDSI	CCRYGG	1 cut(s)	700
BstF5I	GGATG	3 cut(s)	76, 1013, 1294
BstKTI	GATC	7 cut(s)	496, 659, 699, 1225, 1273, 1322, 1339
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	7 cut(s)	493, 656, 696, 1222, 1270, 1319, 1336
BstMWI	GCNNNNNNNGC	2 cut(s)	1008, 1352
BstNI	CCWGG	3 cut(s)	1005, 1101, 1418
BstNSI	RCATGY	3 cut(s)	716, 1129, 1217
BstSCI	CCNGG	4 cut(s)	228, 1003, 1099, 1416
BstSFI	CTRYAG	1 cut(s)	988
BstSLI	GKGCMC	1 cut(s)	410
BstV1I	GCAGC	2 cut(s)	978, 1355
BstV2I	GAAGAC	3 cut(s)	339, 544, 1250
BstX2I	RGATCY	2 cut(s)	656, 696
BstYI	RGATCY	2 cut(s)	656, 696
BsuI	GTATCC	3 cut(s)	244, 332, 463
BtgI	CCRYGG	1 cut(s)	700
BtsCI	GGATG	3 cut(s)	76, 1013, 1294
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	5 cut(s)	72, 117, 667, 861, 1386
Cac8I	GCNNGC	1 cut(s)	1452
CaiI	CAGNNNCTG	3 cut(s)	116, 904, 1451
CciI	TCATGA	1 cut(s)	1042
Cfr13I	GGNCC	1 cut(s)	1277
Csp6I	GTAC	1 cut(s)	928
CviAII	CATG	7 cut(s)	491, 634, 701, 713, 1043, 1126, 1214
CviQI	GTAC	1 cut(s)	928
DdeI	CTNAG	3 cut(s)	6, 848, 897
DpnI	GATC	7 cut(s)	495, 658, 698, 1224, 1272, 1321, 1338
DpnII	GATC	7 cut(s)	493, 656, 696, 1222, 1270, 1319, 1336
DrdI	GACNNNNNNGTC	1 cut(s)	1214
DriI	GACNNNNNGTC	1 cut(s)	675
DseDI	GACNNNNNNGTC	1 cut(s)	1214
Eam1104I	CTCTTC	2 cut(s)	1099, 1194
Eam1105I	GACNNNNNGTC	1 cut(s)	675
EarI	CTCTTC	2 cut(s)	1099, 1194
EciI	GGCGGA	1 cut(s)	364
Ecl136II	GAGCTC	1 cut(s)	1182
Eco130I	CCWWGG	2 cut(s)	700, 977
Eco24I	GRGCYC	1 cut(s)	1184
Eco32I	GATATC	1 cut(s)	631
Eco47I	GGWCC	1 cut(s)	1277
Eco53kI	GAGCTC	1 cut(s)	1182
Eco57I	CTGAAG	1 cut(s)	1319
EcoICRI	GAGCTC	1 cut(s)	1182
EcoRII	CCWGG	3 cut(s)	1003, 1099, 1416
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	2 cut(s)	700, 977
EcoT38I	GRGCYC	1 cut(s)	1184
ErhI	CCWWGG	2 cut(s)	700, 977
FaeI	CATG	7 cut(s)	494, 637, 704, 716, 1046, 1129, 1217
FaqI	GGGAC	1 cut(s)	794
FatI	CATG	7 cut(s)	490, 633, 700, 712, 1042, 1125, 1213
FauI	CCCGC	1 cut(s)	445
FbaI	TGATCA	2 cut(s)	493, 1270
Fnu4HI	GCNGC	2 cut(s)	967, 1344
FokI	GGATG	3 cut(s)	83, 1020, 1301
FriOI	GRGCYC	1 cut(s)	1184
Fsp4HI	GCNGC	2 cut(s)	967, 1344
FspBI	CTAG	2 cut(s)	27, 123
GluI	GCNGC	2 cut(s)	967, 1344
GsuI	CTGGAG	2 cut(s)	1083, 1439
HapII	CCGG	2 cut(s)	230, 1361
Hin1II	CATG	7 cut(s)	494, 637, 704, 716, 1046, 1129, 1217
HincII	GTYRAC	1 cut(s)	867
HindII	GTYRAC	1 cut(s)	867
HinfI	GANTC	6 cut(s)	152, 850, 875, 901, 1133, 1171
HpaII	CCGG	2 cut(s)	230, 1361
HphI	GGTGA	3 cut(s)	404, 488, 584
Hpy166II	GTNNAC	6 cut(s)	408, 458, 478, 575, 867, 892
Hpy188III	TCNNGA	7 cut(s)	317, 533, 654, 1018, 1043, 1268, 1397
Hpy8I	GTNNAC	6 cut(s)	408, 458, 478, 575, 867, 892
HpyAV	CCTTC	7 cut(s)	244, 290, 316, 816, 1148, 1294, 1396
HpyCH4III	ACNGT	7 cut(s)	136, 164, 196, 438, 447, 475, 1390
HpyCH4IV	ACGT	1 cut(s)	1026
HpyCH4V	TGCA	6 cut(s)	272, 283, 408, 423, 615, 1328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1008, 1352
HpyF3I	CTNAG	3 cut(s)	6, 848, 897
HpySE526I	ACGT	1 cut(s)	1026
Hsp92II	CATG	7 cut(s)	494, 637, 704, 716, 1046, 1129, 1217
KpnI	GGTACC	1 cut(s)	931
Ksp22I	TGATCA	2 cut(s)	493, 1270
Kzo9I	GATC	7 cut(s)	493, 656, 696, 1222, 1270, 1319, 1336
LmnI	GCTCC	3 cut(s)	169, 393, 981
Lsp1109I	GCAGC	2 cut(s)	978, 1355
LweI	GCATC	3 cut(s)	998, 1150, 1315
MaeI	CTAG	2 cut(s)	27, 123
MaeII	ACGT	1 cut(s)	1026
MaeIII	GTNAC	2 cut(s)	118, 1111
MalI	GATC	7 cut(s)	495, 658, 698, 1224, 1272, 1321, 1338
MboI	GATC	7 cut(s)	493, 656, 696, 1222, 1270, 1319, 1336
MboII	GAAGA	7 cut(s)	344, 544, 838, 1116, 1181, 1232, 1255
MflI	RGATCY	2 cut(s)	656, 696
MhlI	GDGCHC	2 cut(s)	410, 1184
MluCI	AATT	1 cut(s)	600
MlyI	GAGTC	4 cut(s)	859, 895, 1127, 1165
MmeI	TCCRAC	2 cut(s)	189, 420
MseI	TTAA	1 cut(s)	1229
MslI	CAYNNNNRTG	2 cut(s)	51, 110
MspA1I	CMGCKG	2 cut(s)	560, 734
MspCI	CTTAAG	1 cut(s)	1228
MspI	CCGG	2 cut(s)	230, 1361
MspR9I	CCNGG	4 cut(s)	230, 1005, 1101, 1418
MvaI	CCWGG	3 cut(s)	1005, 1101, 1418
MwoI	GCNNNNNNNGC	2 cut(s)	1008, 1352
NciI	CCSGG	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	700
NdeII	GATC	7 cut(s)	493, 656, 696, 1222, 1270, 1319, 1336
NlaIII	CATG	7 cut(s)	494, 637, 704, 716, 1046, 1129, 1217
NlaIV	GGNNCC	3 cut(s)	658, 929, 1414
NspI	RCATGY	3 cut(s)	716, 1129, 1217
PagI	TCATGA	1 cut(s)	1042
PciI	ACATGT	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	152, 875
PfoI	TCCNGGA	1 cut(s)	1099
PkrI	GCNGC	2 cut(s)	968, 1345
PleI	GAGTC	4 cut(s)	858, 895, 1127, 1165
PpsI	GAGTC	4 cut(s)	858, 895, 1127, 1165
Ppu21I	YACGTR	1 cut(s)	1027
PscI	ACATGT	1 cut(s)	712
PsiI	TTATAA	3 cut(s)	606, 801, 1061
Psp124BI	GAGCTC	1 cut(s)	1184
Psp6I	CCWGG	3 cut(s)	1003, 1099, 1416
PspGI	CCWGG	3 cut(s)	1003, 1099, 1416
PspN4I	GGNNCC	3 cut(s)	658, 929, 1414
PspPI	GGNCC	1 cut(s)	1277
PstNI	CAGNNNCTG	3 cut(s)	116, 904, 1451
PsuI	RGATCY	2 cut(s)	656, 696
PvuII	CAGCTG	2 cut(s)	560, 734
RsaI	GTAC	1 cut(s)	929
RsaNI	GTAC	1 cut(s)	928
RseI	CAYNNNNRTG	2 cut(s)	51, 110
SacI	GAGCTC	1 cut(s)	1184
SaqAI	TTAA	1 cut(s)	1229
SatI	GCNGC	2 cut(s)	967, 1344
Sau3AI	GATC	7 cut(s)	493, 656, 696, 1222, 1270, 1319, 1336
Sau96I	GGNCC	1 cut(s)	1277
SchI	GAGTC	4 cut(s)	859, 895, 1127, 1165
ScrFI	CCNGG	4 cut(s)	230, 1005, 1101, 1418
SduI	GDGCHC	2 cut(s)	410, 1184
SfaNI	GCATC	3 cut(s)	998, 1150, 1315
SfcI	CTRYAG	1 cut(s)	988
SinI	GGWCC	1 cut(s)	1277
SmiMI	CAYNNNNRTG	2 cut(s)	51, 110
SmlI	CTYRAG	1 cut(s)	1228
SmoI	CTYRAG	1 cut(s)	1228
Sse9I	AATT	1 cut(s)	600
SsiI	CCGC	5 cut(s)	98, 267, 349, 452, 813
SspMI	CTAG	2 cut(s)	27, 123
SstI	GAGCTC	1 cut(s)	1184
StyD4I	CCNGG	4 cut(s)	228, 1003, 1099, 1416
StyI	CCWWGG	2 cut(s)	700, 977
TaaI	ACNGT	7 cut(s)	136, 164, 196, 438, 447, 475, 1390
TaiI	ACGT	1 cut(s)	1029
TaqI	TCGA	1 cut(s)	1218
TasI	AATT	1 cut(s)	600
TfiI	GAWTC	2 cut(s)	152, 875
Tru1I	TTAA	1 cut(s)	1229
Tru9I	TTAA	1 cut(s)	1229
TscAI	CASTG	5 cut(s)	72, 117, 667, 861, 1393
TseI	GCWGC	2 cut(s)	966, 1343
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	5 cut(s)	72, 117, 667, 861, 1393
Vha464I	CTTAAG	1 cut(s)	1228
VneI	GTGCAC	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	1277
XceI	RCATGY	3 cut(s)	716, 1129, 1217
XspI	CTAG	2 cut(s)	27, 123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.