MD17G1112600.v1.1
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
9643152 .. 9646837
3686 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1112600.v1.1.491

Sequence Viewer

Length: 1416 bp
ATGATTTCTCGAGGGGAAGATGGGACAGATAAAGTTGCTTCTGATGTATTACAAAAGAAAGAGAGTTCTGATAGTGAAATTAATGTGCCACATCAAACTCCTAATAAAGGGATCTATCCATTGCAATCAGATCATAAAGGAACTGCTCAATTTCTAACACCTGAGAAAGCGTCGCAGGTGCCTGATGGAGTTGTTAGTGCATCACAACCAAATCAAGAAGGAAGTGCTTCCTCTTTAACATCTGAGAAAACCCCTCAAACCCCTGAAACCACTGCACTTGCCTTGCGATCTGGTCAAGAAGGAACCACTCCATCTACTACACTTGAGAGAGTGTTAGACGATGGTTATCACTGGAGAAAATATGGCCAGAAATCTGTCAAGGGAAATTCATATGTAAGAAGTTACTACAGATGTACGCATCCAAAATGTGAAGTCAAGAGGCAAGTGGAACGTAAACATAGTGGCCAGATAACAGATACCATATACTTTGGTGAGCATGAGCATTCTAAAGTCCAAAGTGTCCCAGCAGCTGTTAGTTTTGTTGTATCCATTGTTGATGACGGAAGACCAGAAGTGGTTTTGGAAACTGATGGTGAAGATAAATCGTCGAATGCGCATGGCCACGCATCTAACCAGATTGAGCCAGTAGATCCCCCACAGCTTTCAAGCGTTGCAGTTACTGAAGCCGTGCAGGGTGTGCTCGCTCAGTCAAATAGAACAAGAGATGGCGATCCTGACCCTAAAAGACAGAAGAAGGCAAAACATAAAGGCAACTCATTACCCGTGGTTGTTCAGACTTTGAGTGAGGTTGATATAGTGAGTGATGGGTACAGATGGCGCAAATATGGGCAGAAATTAGTGAAAGGCAATCCAAATCCAAGGAGTTACTACAGATGCTCAAATCCTGGATGCCCCGTTAGGAAACATGTAGAGAGGGCGTCTCATGATTCGAAAGTGGTTATAGCCACATATGAGGGGCAACATGATCATGATATGCCCCCGACAAGGACTGTCACCCATAATACAGCAGCATCAAACGTGTTTACGACGGCCCGCATTAGTGAGTCTGGTGCTGTACCCAAGGGGAATGCTGTATGCCGCGATACTAGCCCAGAACATGAAGTTAAACCAAGCAAGCAACGGAAAACTAAATCACGTGATGTTGCTGGCTCTGATGTGGTCGTAGATTCTGATCTGAGCCCTGAAAGAACACTACATGAGAAGTTGGTTGCAAAAGCATGTACCACAAAAGAAAGCGAACCCCCTTACATGATTGTTTGTAGAGCAGATCAAATGAAAACTCTTGAGTTGGGAATTAAATCAGAAGGCGATGATATGGTTGTTTGCGACAATCTGCGTCCAGAAAGTAATCCATTGGAGCAAGAAAAGCCGAAAGCAGAACCCGTTGATAGTTAA

Protein Analysis

472

Amino Acids

51.66

Weight (kDa)

6.64

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 113 - 168 8.7e-23 WRKY DNA -binding domain
WRKY PF03106 275 - 331 2.8e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 166
Acc16I TGCGCA 1 cut(s) 615
Acc36I ACCTGC 1 cut(s) 166
AccB1I GGYRCC 1 cut(s) 178
AccII CGCG 1 cut(s) 1101
AciI CCGC 2 cut(s) 1054, 1099
AclWI GGATC 3 cut(s) 119, 644, 725
AcoI YGGCCR 3 cut(s) 364, 463, 619
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 1 cut(s) 702
AcvI CACGTG 1 cut(s) 1157
AcyI GRCGYC 1 cut(s) 938
AfaI GTAC 4 cut(s) 415, 830, 1077, 1243
AfiI CCNNNNNNNGG 2 cut(s) 107, 1005
AflIII ACRYGT 2 cut(s) 925, 1038
AgsI TTSAA 1 cut(s) 666
AjnI CCWGG 1 cut(s) 904
AluBI AGCT 2 cut(s) 530, 661
AluI AGCT 2 cut(s) 530, 661
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 1 cut(s) 945
AlwI GGATC 3 cut(s) 119, 644, 725
AlwNI CAGNNNCTG 2 cut(s) 530, 680
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 4 cut(s) 364, 463, 619, 1050
ApeKI GCWGC 2 cut(s) 527, 1028
ApoI RAATTY 1 cut(s) 385
AseI ATTAAT 1 cut(s) 81
Asp700I GAANNNNTTC 1 cut(s) 226
AspLEI GCGC 2 cut(s) 616, 840
AspS9I GGNCC 1 cut(s) 1051
AsuHPI GGTGA 3 cut(s) 503, 605, 1006
AsuII TTCGAA 1 cut(s) 950
AvaI CYCGRG 1 cut(s) 9
BalI TGGCCA 3 cut(s) 366, 465, 621
BanI GGYRCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 1202
BbrPI CACGTG 1 cut(s) 1157
BbsI GAAGAC 1 cut(s) 571
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 2 cut(s) 539, 1040
BccI CCATC 8 cut(s) 14, 179, 319, 335, 584, 719, 818, 828
BceAI ACGGC 2 cut(s) 671, 1065
BciT130I CCWGG 1 cut(s) 906
BciVI GTATCC 1 cut(s) 556
BclI TGATCA 1 cut(s) 985
BcoDI GTCTC 1 cut(s) 945
BfaI CTAG 1 cut(s) 1107
BfmI CTRYAG 2 cut(s) 406, 889
BfuAI ACCTGC 1 cut(s) 166
BfuI GTATCC 1 cut(s) 556
BisI GCNGC 3 cut(s) 528, 1029, 1099
BlsI GCNGC 3 cut(s) 529, 1030, 1100
Bme1390I CCNGG 1 cut(s) 906
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 1051
BmiI GGNNCC 2 cut(s) 180, 304
BmrFI CCNGG 1 cut(s) 906
BmsI GCATC 6 cut(s) 209, 427, 635, 884, 899, 1040
BpiI GAAGAC 1 cut(s) 571
BplI GAGNNNNNCTC 2 cut(s) 925, 957
BpmI CTGGAG 1 cut(s) 373
Bpu14I TTCGAA 1 cut(s) 950
BpuEI CTTGAG 2 cut(s) 344, 1325
BsaAI YACGTR 1 cut(s) 1157
BsaBI GATNNNNATC 3 cut(s) 345, 729, 1191
BsaHI GRCGYC 1 cut(s) 938
BsaJI CCNNGG 3 cut(s) 783, 878, 1080
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 1005
Bse1I ACTGG 2 cut(s) 356, 644
Bse3DI GCAATG 1 cut(s) 119
Bse8I GATNNNNATC 3 cut(s) 345, 729, 1191
BseBI CCWGG 1 cut(s) 906
BseDI CCNNGG 3 cut(s) 783, 878, 1080
BseGI GGATG 2 cut(s) 418, 914
BseJI GATNNNNATC 3 cut(s) 345, 729, 1191
BseLI CCNNNNNNNGG 2 cut(s) 107, 1005
BseMI GCAATG 1 cut(s) 119
BseMII CTCAG 4 cut(s) 153, 234, 719, 1187
BseNI ACTGG 2 cut(s) 356, 644
BseXI GCAGC 2 cut(s) 539, 1040
BseYI CCCAGC 1 cut(s) 523
BsgI GTGCAG 2 cut(s) 258, 710
Bsh1236I CGCG 1 cut(s) 1101
BshFI GGCC 4 cut(s) 366, 465, 621, 1052
BshNI GGYRCC 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 702
BsiHKCI CYCGRG 1 cut(s) 9
BslFI GGGAC 2 cut(s) 37, 506
BslI CCNNNNNNNGG 2 cut(s) 107, 1005
BsmAI GTCTC 1 cut(s) 945
BsmBI CGTCTC 1 cut(s) 945
BsmFI GGGAC 2 cut(s) 37, 506
BsmI GAATGC 3 cut(s) 502, 616, 1093
BsnI GGCC 4 cut(s) 366, 465, 621, 1052
BsoBI CYCGRG 1 cut(s) 9
Bsp119I TTCGAA 1 cut(s) 950
Bsp1286I GDGCHC 2 cut(s) 702, 1202
Bsp143I GATC 8 cut(s) 111, 130, 287, 649, 730, 985, 1192, 1288
BspACI CCGC 2 cut(s) 1054, 1099
BspANI GGCC 4 cut(s) 366, 465, 621, 1052
BspCNI CTCAG 4 cut(s) 154, 235, 718, 1188
BspFNI CGCG 1 cut(s) 1101
BspHI TCATGA 2 cut(s) 943, 988
BspLI GGNNCC 2 cut(s) 180, 304
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 3 cut(s) 119, 644, 725
BspT104I TTCGAA 1 cut(s) 950
BspT107I GGYRCC 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 119
BsrI ACTGG 2 cut(s) 356, 644
BssECI CCNNGG 3 cut(s) 783, 878, 1080
BssMI GATC 8 cut(s) 111, 130, 287, 649, 730, 985, 1192, 1288
BssNI GRCGYC 1 cut(s) 938
BssT1I CCWWGG 2 cut(s) 878, 1080
Bst2UI CCWGG 1 cut(s) 906
Bst4CI ACNGT 1 cut(s) 1012
BstACI GRCGYC 1 cut(s) 938
BstAPI GCANNNNNTGC 1 cut(s) 697
BstBAI YACGTR 1 cut(s) 1157
BstBI TTCGAA 1 cut(s) 950
BstC8I GCNNGC 4 cut(s) 702, 1054, 1136, 1168
BstDEI CTNAG 4 cut(s) 162, 243, 705, 1196
BstDSI CCRYGG 1 cut(s) 783
BstENI CCTNNNNNAGG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 418, 914
BstFNI CGCG 1 cut(s) 1101
BstHHI GCGC 2 cut(s) 616, 840
BstKTI GATC 8 cut(s) 114, 133, 290, 652, 733, 988, 1195, 1291
BstMAI GTCTC 1 cut(s) 945
BstMBI GATC 8 cut(s) 111, 130, 287, 649, 730, 985, 1192, 1288
BstMWI GCNNNNNNNGC 3 cut(s) 697, 1107, 1387
BstNI CCWGG 1 cut(s) 906
BstNSI RCATGY 2 cut(s) 929, 1242
BstSCI CCNGG 1 cut(s) 904
BstSFI CTRYAG 2 cut(s) 406, 889
BstUI CGCG 1 cut(s) 1101
BstV1I GCAGC 2 cut(s) 539, 1040
BstV2I GAAGAC 1 cut(s) 571
BstX2I RGATCY 2 cut(s) 111, 649
BstYI RGATCY 2 cut(s) 111, 649
BsuI GTATCC 1 cut(s) 556
BsuRI GGCC 4 cut(s) 366, 465, 621, 1052
BtgI CCRYGG 1 cut(s) 783
BtgZI GCGATG 1 cut(s) 1344
BtsCI GGATG 2 cut(s) 418, 914
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 270, 349
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 4 cut(s) 702, 1054, 1136, 1168
CaiI CAGNNNCTG 2 cut(s) 530, 680
CciI TCATGA 2 cut(s) 943, 988
CfoI GCGC 2 cut(s) 616, 840
Cfr13I GGNCC 1 cut(s) 1051
CseI GACGC 3 cut(s) 159, 927, 1346
Csp6I GTAC 4 cut(s) 414, 829, 1076, 1242
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviQI GTAC 4 cut(s) 414, 829, 1076, 1242
DdeI CTNAG 4 cut(s) 162, 243, 705, 1196
DpnI GATC 8 cut(s) 113, 132, 289, 651, 732, 987, 1194, 1290
DpnII GATC 8 cut(s) 111, 130, 287, 649, 730, 985, 1192, 1288
EaeI YGGCCR 3 cut(s) 364, 463, 619
Eco130I CCWWGG 2 cut(s) 878, 1080
Eco24I GRGCYC 1 cut(s) 1202
Eco57I CTGAAG 1 cut(s) 702
Eco72I CACGTG 1 cut(s) 1157
Eco88I CYCGRG 1 cut(s) 9
EcoNI CCTNNNNNAGG 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 904
EcoT14I CCWWGG 2 cut(s) 878, 1080
EcoT38I GRGCYC 1 cut(s) 1202
ErhI CCWWGG 2 cut(s) 878, 1080
Esp3I CGTCTC 1 cut(s) 945
FaqI GGGAC 2 cut(s) 37, 506
FauI CCCGC 1 cut(s) 1061
FauNDI CATATG 2 cut(s) 391, 970
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 3 cut(s) 528, 1029, 1099
FokI GGATG 2 cut(s) 405, 921
FriOI GRGCYC 1 cut(s) 1202
Fsp4HI GCNGC 3 cut(s) 528, 1029, 1099
FspAI RTGCGCAY 1 cut(s) 615
FspBI CTAG 1 cut(s) 1107
FspI TGCGCA 1 cut(s) 615
GlaI GCGC 2 cut(s) 615, 839
GluI GCNGC 3 cut(s) 528, 1029, 1099
GsaI CCCAGC 1 cut(s) 527
GsuI CTGGAG 1 cut(s) 373
HaeIII GGCC 4 cut(s) 366, 465, 621, 1052
HgaI GACGC 3 cut(s) 159, 927, 1346
HhaI GCGC 2 cut(s) 616, 840
Hin1I GRCGYC 1 cut(s) 938
Hin6I GCGC 2 cut(s) 614, 838
HinP1I GCGC 2 cut(s) 614, 838
HinfI GANTC 3 cut(s) 947, 1064, 1187
HphI GGTGA 3 cut(s) 503, 605, 1006
Hpy166II GTNNAC 2 cut(s) 455, 1044
Hpy188I TCNGA 9 cut(s) 43, 70, 130, 244, 795, 1174, 1192, 1197, 1324
Hpy188III TCNNGA 9 cut(s) 9, 215, 296, 436, 734, 944, 989, 1304, 1361
Hpy8I GTNNAC 2 cut(s) 455, 1044
Hpy99I CGWCG 3 cut(s) 175, 610, 1051
HpyAV CCTTC 4 cut(s) 212, 293, 748, 1319
HpyCH4III ACNGT 1 cut(s) 1012
HpyCH4IV ACGT 3 cut(s) 451, 1038, 1156
HpyCH4V TGCA 6 cut(s) 124, 200, 275, 674, 691, 1232
HpyF10VI GCNNNNNNNGC 3 cut(s) 697, 1107, 1387
HpyF3I CTNAG 4 cut(s) 162, 243, 705, 1196
HpySE526I ACGT 3 cut(s) 451, 1038, 1156
Hsp92I GRCGYC 1 cut(s) 938
HspAI GCGC 2 cut(s) 614, 838
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 8 cut(s) 111, 130, 287, 649, 730, 985, 1192, 1288
LmnI GCTCC 1 cut(s) 1378
Lsp1109I GCAGC 2 cut(s) 539, 1040
LweI GCATC 6 cut(s) 209, 427, 635, 884, 899, 1040
MaeI CTAG 1 cut(s) 1107
MaeII ACGT 3 cut(s) 451, 1038, 1156
MaeIII GTNAC 4 cut(s) 401, 676, 884, 1012
MalI GATC 8 cut(s) 113, 132, 289, 651, 732, 987, 1194, 1290
MboI GATC 8 cut(s) 111, 130, 287, 649, 730, 985, 1192, 1288
MboII GAAGA 4 cut(s) 29, 576, 608, 763
MflI RGATCY 2 cut(s) 111, 649
MhlI GDGCHC 2 cut(s) 702, 1202
MlsI TGGCCA 3 cut(s) 366, 465, 621
MluCI AATT 5 cut(s) 78, 149, 385, 854, 1314
MluNI TGGCCA 3 cut(s) 366, 465, 621
MlyI GAGTC 1 cut(s) 1073
MnlI CCTC 7 cut(s) 5, 241, 264, 432, 799, 927, 967
Mox20I TGGCCA 3 cut(s) 366, 465, 621
MroXI GAANNNNTTC 1 cut(s) 226
MscI TGGCCA 3 cut(s) 366, 465, 621
MseI TTAA 5 cut(s) 81, 236, 1125, 1317, 1414
MslI CAYNNNNRTG 1 cut(s) 987
Msp20I TGGCCA 3 cut(s) 366, 465, 621
MspA1I CMGCKG 1 cut(s) 530
MspR9I CCNGG 1 cut(s) 906
Mva1269I GAATGC 3 cut(s) 502, 616, 1093
MvaI CCWGG 1 cut(s) 906
MvnI CGCG 1 cut(s) 1101
MwoI GCNNNNNNNGC 3 cut(s) 697, 1107, 1387
NdeI CATATG 2 cut(s) 391, 970
NdeII GATC 8 cut(s) 111, 130, 287, 649, 730, 985, 1192, 1288
NlaIV GGNNCC 2 cut(s) 180, 304
NmuCI GTSAC 1 cut(s) 1012
NsbI TGCGCA 1 cut(s) 615
NspI RCATGY 2 cut(s) 929, 1242
NspV TTCGAA 1 cut(s) 950
PaeR7I CTCGAG 1 cut(s) 9
PagI TCATGA 2 cut(s) 943, 988
PaqCI CACCTGC 1 cut(s) 166
PciI ACATGT 1 cut(s) 925
PctI GAATGC 3 cut(s) 502, 616, 1093
PdmI GAANNNNTTC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 947, 1187
PfoI TCCNGGA 1 cut(s) 904
PkrI GCNGC 3 cut(s) 529, 1030, 1100
PleI GAGTC 1 cut(s) 1072
PmaCI CACGTG 1 cut(s) 1157
PmlI CACGTG 1 cut(s) 1157
PpsI GAGTC 1 cut(s) 1072
Ppu21I YACGTR 1 cut(s) 1157
PscI ACATGT 1 cut(s) 925
PshBI ATTAAT 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 904
PspCI CACGTG 1 cut(s) 1157
PspFI CCCAGC 1 cut(s) 523
PspGI CCWGG 1 cut(s) 904
PspN4I GGNNCC 2 cut(s) 180, 304
PspPI GGNCC 1 cut(s) 1051
PstNI CAGNNNCTG 2 cut(s) 530, 680
PsuI RGATCY 2 cut(s) 111, 649
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 4 cut(s) 415, 830, 1077, 1243
RsaNI GTAC 4 cut(s) 414, 829, 1076, 1242
RseI CAYNNNNRTG 1 cut(s) 987
SaqAI TTAA 5 cut(s) 81, 236, 1125, 1317, 1414
SatI GCNGC 3 cut(s) 528, 1029, 1099
Sau3AI GATC 8 cut(s) 111, 130, 287, 649, 730, 985, 1192, 1288
Sau96I GGNCC 1 cut(s) 1051
SchI GAGTC 1 cut(s) 1073
ScrFI CCNGG 1 cut(s) 906
SduI GDGCHC 2 cut(s) 702, 1202
SetI ASST 8 cut(s) 163, 180, 454, 532, 663, 810, 1041, 1159
SfaNI GCATC 6 cut(s) 209, 427, 635, 884, 899, 1040
SfcI CTRYAG 2 cut(s) 406, 889
Sfr274I CTCGAG 1 cut(s) 9
SfuI TTCGAA 1 cut(s) 950
SlaI CTCGAG 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 987
SmlI CTYRAG 3 cut(s) 9, 323, 1304
SmoI CTYRAG 3 cut(s) 9, 323, 1304
Sse9I AATT 5 cut(s) 78, 149, 385, 854, 1314
SsiI CCGC 2 cut(s) 1054, 1099
SspMI CTAG 1 cut(s) 1107
StyD4I CCNGG 1 cut(s) 904
StyI CCWWGG 2 cut(s) 878, 1080
TaaI ACNGT 1 cut(s) 1012
TaiI ACGT 3 cut(s) 454, 1041, 1159
TaqI TCGA 3 cut(s) 10, 608, 950
TasI AATT 5 cut(s) 78, 149, 385, 854, 1314
TauI GCSGC 1 cut(s) 1101
TfiI GAWTC 2 cut(s) 947, 1187
Tru1I TTAA 5 cut(s) 81, 236, 1125, 1317, 1414
Tru9I TTAA 5 cut(s) 81, 236, 1125, 1317, 1414
TscAI CASTG 2 cut(s) 277, 356
TseFI GTSAC 1 cut(s) 1012
TseI GCWGC 2 cut(s) 527, 1028
Tsp45I GTSAC 1 cut(s) 1012
TspDTI ATGAA 3 cut(s) 378, 1134, 1310
TspGWI ACGGA 2 cut(s) 576, 1156
TspRI CASTG 2 cut(s) 277, 356
VspI ATTAAT 1 cut(s) 81
XagI CCTNNNNNAGG 1 cut(s) 105
XapI RAATTY 1 cut(s) 385
XceI RCATGY 2 cut(s) 929, 1242
XhoI CTCGAG 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 226
XspI CTAG 1 cut(s) 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.