pycom09g04600
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
3396590 .. 3398511
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g04600.2

Sequence Viewer

Length: 1281 bp
ATGATTCCTTTAGGGGAAGATGGGACAGATAAAGTTGCTTCTGATATAGTACAGAAGAAAGAGAGTTCTGATAGTGAAATTCATGCGCCACATCAAGCTCCTAATAAGGGGATCTGTCTGTTGCAATCAGATCATAAAGGGACTGCTCAATTTCTAACACCTGAGAAAGCGTCACAGGTGCCTGATGGAGTTGTTACTGCGTCACAACCAAATCAAGAAGGAAGTGCTTCCTCTTTAACATCTGAGAAAACCCCACAGACTCCTGAAACCGCTGCACTTGCCTTGCGATCTGCTCAAGAAGGAACCACTCCATCTACTACACTTAAGAGAGTGTTAGACGATGGTTATCACTGGAGAAAATACGGCCAGAAATTTGTTAAGGGAAAATCATATGTAAGAAGTTACTACAGATGTACGTATCCAAAATGTGAAGTGAAGAAGCAAGTGGAACGTGCACATAGTGGCCAGATAACAGATACTGTATACTTTGGTGAGCATGAACATCCTAAACTCCGAAGTGTCCCAGTAGCTGTTAGTTTCGTTGTGTCCATTGTTGAGGACGAAAGACCAAAAGTGCTTTTGTTAACTGATGTTGAAGACAAATCGTCAAGTGCGCATGGGCACACATCTAACCAGATTGAGCCAGTGGATCCTCCACAGCTTTCAAGCGTTGCAGTTACTGAAGCCATGCAGGGTGTGCTCTCTCAGTCAAATAGACCGAGAGATGACTATGAGATCCTGACCCTAAAAGACACTGTTGAACCACGCATGGTTGTTCAGACTATGAGTGAGGTTGATATAGTGAGTGATGGGTACAGATGGCGCAAATACGGGCAGAAATTAGTAAAAGGCAATCCAAATCCAAGGAGTTACTACAGATGCTCAAATCCTGGATGCCCTGTTAAGAAACATGTAGAGAGGGCGTCTCATGATTCAAAAGTGGTTATAGCCACATATGAGGGGCAACATGATCATGATATGCCCCCGACAAGGACTGTGACCCATAATACAGCAGCATCGAACGTGTTTACGACAGCCCGCATTTGTGAGTCTGGCACTATACCCGAAGGGAATGCTGTCTGCCGCGATACTAGCCCAGAACATGAAGTTAAACCAAGCGAGCAACGGAATGATGAGTCAAAAATTAAACCAAGTGATGTTGCTGGCTCAGATATGGTCGTTGATTCTGATCTAGGCCCCGAAAGAACACCACATCGATCAATCGGTTGCCGAAGCATGTACGACGACGGAAAGCGACCCCCCTTACATGATTGTTTGTAG

Protein Analysis

427

Amino Acids

47.04

Weight (kDa)

6.29

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 615
AccB1I GGYRCC 1 cut(s) 178
AccI GTMKAC 1 cut(s) 483
AccII CGCG 1 cut(s) 1086
AciI CCGC 3 cut(s) 270, 1039, 1084
AclWI GGATC 4 cut(s) 119, 644, 657, 730
AcoI YGGCCR 2 cut(s) 364, 463
AcsI RAATTY 2 cut(s) 78, 371
AcuI CTGAAG 1 cut(s) 702
AcyI GRCGYC 1 cut(s) 923
AdeI CACNNNGTG 1 cut(s) 461
AfaI GTAC 4 cut(s) 51, 415, 815, 1241
AfiI CCNNNNNNNGG 2 cut(s) 107, 990
AflII CTTAAG 1 cut(s) 323
AflIII ACRYGT 2 cut(s) 910, 1023
AgsI TTSAA 4 cut(s) 596, 666, 761, 936
AhdI GACNNNNNGTC 1 cut(s) 604
AjnI CCWGG 1 cut(s) 889
AluBI AGCT 3 cut(s) 98, 530, 661
AluI AGCT 3 cut(s) 98, 530, 661
Alw21I GWGCWC 2 cut(s) 457, 702
Alw26I GTCTC 1 cut(s) 930
Alw44I GTGCAC 1 cut(s) 453
AlwI GGATC 4 cut(s) 119, 644, 657, 730
AlwNI CAGNNNCTG 3 cut(s) 479, 530, 680
AoxI GGCC 3 cut(s) 364, 463, 1195
ApaLI GTGCAC 1 cut(s) 453
ApeKI GCWGC 2 cut(s) 272, 1013
ApoI RAATTY 2 cut(s) 78, 371
Asp700I GAANNNNTTC 1 cut(s) 226
AspLEI GCGC 3 cut(s) 88, 616, 825
AspS9I GGNCC 1 cut(s) 1196
AsuHPI GGTGA 1 cut(s) 503
BaeGI GKGCMC 2 cut(s) 457, 624
BalI TGGCCA 1 cut(s) 465
BamHI GGATCC 1 cut(s) 649
BanI GGYRCC 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 603
Bbv12I GWGCWC 2 cut(s) 457, 702
BbvI GCAGC 2 cut(s) 259, 1025
BccI CCATC 6 cut(s) 14, 179, 319, 335, 803, 813
BceAI ACGGC 1 cut(s) 379
BcgI CGANNNNNNTGC 2 cut(s) 1055, 1089
BciT130I CCWGG 1 cut(s) 891
BciVI GTATCC 1 cut(s) 429
BclI TGATCA 1 cut(s) 970
BcoDI GTCTC 1 cut(s) 930
BfaI CTAG 2 cut(s) 1092, 1193
BfmI CTRYAG 2 cut(s) 406, 874
BfrI CTTAAG 1 cut(s) 323
BfuI GTATCC 1 cut(s) 429
BisI GCNGC 3 cut(s) 273, 1014, 1084
BlsI GCNGC 3 cut(s) 274, 1015, 1085
Bme1390I CCNGG 1 cut(s) 891
BmeRI GACNNNNNGTC 1 cut(s) 604
BmgT120I GGNCC 1 cut(s) 1196
BmiI GGNNCC 4 cut(s) 180, 304, 651, 1198
BmrFI CCNGG 1 cut(s) 891
BmrI ACTGGG 1 cut(s) 518
BmsI GCATC 3 cut(s) 869, 884, 1025
BmuI ACTGGG 1 cut(s) 518
BpiI GAAGAC 1 cut(s) 603
BplI GAGNNNNNCTC 2 cut(s) 910, 942
BpmI CTGGAG 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 279
Bsa29I ATCGAT 1 cut(s) 1216
BsaAI YACGTR 1 cut(s) 417
BsaBI GATNNNNATC 2 cut(s) 345, 1188
BsaHI GRCGYC 1 cut(s) 923
BsaJI CCNNGG 1 cut(s) 863
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 990
Bse1I ACTGG 3 cut(s) 356, 524, 644
Bse8I GATNNNNATC 2 cut(s) 345, 1188
BseBI CCWGG 1 cut(s) 891
BseCI ATCGAT 1 cut(s) 1216
BseDI CCNNGG 1 cut(s) 863
BseGI GGATG 2 cut(s) 502, 899
BseJI GATNNNNATC 2 cut(s) 345, 1188
BseLI CCNNNNNNNGG 2 cut(s) 107, 990
BseMII CTCAG 4 cut(s) 153, 234, 719, 1182
BseNI ACTGG 3 cut(s) 356, 524, 644
BseSI GKGCMC 2 cut(s) 457, 624
BseXI GCAGC 2 cut(s) 259, 1025
BsgI GTGCAG 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 1086
BshFI GGCC 3 cut(s) 366, 465, 1197
BshNI GGYRCC 1 cut(s) 178
BshVI ATCGAT 1 cut(s) 1216
BsiHKAI GWGCWC 2 cut(s) 457, 702
BslFI GGGAC 3 cut(s) 37, 154, 506
BslI CCNNNNNNNGG 2 cut(s) 107, 990
BsmAI GTCTC 1 cut(s) 930
BsmBI CGTCTC 1 cut(s) 930
BsmFI GGGAC 3 cut(s) 37, 154, 506
BsmI GAATGC 1 cut(s) 1078
BsnI GGCC 3 cut(s) 366, 465, 1197
Bsp1286I GDGCHC 3 cut(s) 457, 624, 702
Bsp143I GATC 8 cut(s) 111, 130, 287, 649, 735, 970, 1189, 1217
BspACI CCGC 3 cut(s) 270, 1039, 1084
BspANI GGCC 3 cut(s) 366, 465, 1197
BspCNI CTCAG 4 cut(s) 154, 235, 718, 1181
BspDI ATCGAT 1 cut(s) 1216
BspFNI CGCG 1 cut(s) 1086
BspHI TCATGA 2 cut(s) 928, 973
BspLI GGNNCC 4 cut(s) 180, 304, 651, 1198
BspPI GGATC 4 cut(s) 119, 644, 657, 730
BspT107I GGYRCC 1 cut(s) 178
BspTI CTTAAG 1 cut(s) 323
BsrI ACTGG 3 cut(s) 356, 524, 644
BssECI CCNNGG 1 cut(s) 863
BssMI GATC 8 cut(s) 111, 130, 287, 649, 735, 970, 1189, 1217
BssNAI GTATAC 1 cut(s) 484
BssNI GRCGYC 1 cut(s) 923
BssT1I CCWWGG 1 cut(s) 863
Bst1107I GTATAC 1 cut(s) 484
Bst2UI CCWGG 1 cut(s) 891
Bst4CI ACNGT 3 cut(s) 481, 757, 997
BstACI GRCGYC 1 cut(s) 923
BstAFI CTTAAG 1 cut(s) 323
BstAPI GCANNNNNTGC 1 cut(s) 697
BstBAI YACGTR 1 cut(s) 417
BstC8I GCNNGC 3 cut(s) 1039, 1121, 1165
BstDEI CTNAG 4 cut(s) 162, 243, 705, 1168
BstF5I GGATG 2 cut(s) 502, 899
BstFNI CGCG 1 cut(s) 1086
BstHHI GCGC 3 cut(s) 88, 616, 825
BstKTI GATC 8 cut(s) 114, 133, 290, 652, 738, 973, 1192, 1220
BstMAI GTCTC 1 cut(s) 930
BstMBI GATC 8 cut(s) 111, 130, 287, 649, 735, 970, 1189, 1217
BstMWI GCNNNNNNNGC 3 cut(s) 278, 697, 1092
BstNI CCWGG 1 cut(s) 891
BstNSI RCATGY 2 cut(s) 914, 1240
BstSCI CCNGG 1 cut(s) 889
BstSFI CTRYAG 2 cut(s) 406, 874
BstSLI GKGCMC 2 cut(s) 457, 624
BstSNI TACGTA 1 cut(s) 417
BstUI CGCG 1 cut(s) 1086
BstV1I GCAGC 2 cut(s) 259, 1025
BstV2I GAAGAC 1 cut(s) 603
BstX2I RGATCY 3 cut(s) 111, 649, 735
BstYI RGATCY 3 cut(s) 111, 649, 735
BstZ17I GTATAC 1 cut(s) 484
Bsu15I ATCGAT 1 cut(s) 1216
BsuI GTATCC 1 cut(s) 429
BsuRI GGCC 3 cut(s) 366, 465, 1197
BsuTUI ATCGAT 1 cut(s) 1216
BtsCI GGATG 2 cut(s) 502, 899
BtsIMutI CAGTG 3 cut(s) 349, 651, 753
Cac8I GCNNGC 3 cut(s) 1039, 1121, 1165
CaiI CAGNNNCTG 3 cut(s) 479, 530, 680
CciI TCATGA 2 cut(s) 928, 973
CfoI GCGC 3 cut(s) 88, 616, 825
Cfr13I GGNCC 1 cut(s) 1196
ClaI ATCGAT 1 cut(s) 1216
CseI GACGC 3 cut(s) 159, 189, 912
Csp6I GTAC 4 cut(s) 50, 414, 814, 1240
CviQI GTAC 4 cut(s) 50, 414, 814, 1240
DdeI CTNAG 4 cut(s) 162, 243, 705, 1168
DpnI GATC 8 cut(s) 113, 132, 289, 651, 737, 972, 1191, 1219
DpnII GATC 8 cut(s) 111, 130, 287, 649, 735, 970, 1189, 1217
DraIII CACNNNGTG 1 cut(s) 461
DriI GACNNNNNGTC 1 cut(s) 604
EaeI YGGCCR 2 cut(s) 364, 463
Eam1105I GACNNNNNGTC 1 cut(s) 604
Eco105I TACGTA 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 863
Eco57I CTGAAG 1 cut(s) 702
EcoO109I RGGNCCY 1 cut(s) 1196
EcoRII CCWGG 1 cut(s) 889
EcoT14I CCWWGG 1 cut(s) 863
ErhI CCWWGG 1 cut(s) 863
Esp3I CGTCTC 1 cut(s) 930
FaqI GGGAC 3 cut(s) 37, 154, 506
FauI CCCGC 1 cut(s) 1046
FauNDI CATATG 2 cut(s) 391, 955
FbaI TGATCA 1 cut(s) 970
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 3 cut(s) 273, 1014, 1084
FokI GGATG 2 cut(s) 489, 906
Fsp4HI GCNGC 3 cut(s) 273, 1014, 1084
FspAI RTGCGCAY 1 cut(s) 615
FspBI CTAG 2 cut(s) 1092, 1193
FspI TGCGCA 1 cut(s) 615
GlaI GCGC 3 cut(s) 87, 615, 824
GluI GCNGC 3 cut(s) 273, 1014, 1084
GsuI CTGGAG 1 cut(s) 373
HaeIII GGCC 3 cut(s) 366, 465, 1197
HgaI GACGC 3 cut(s) 159, 189, 912
HhaI GCGC 3 cut(s) 88, 616, 825
Hin1I GRCGYC 1 cut(s) 923
Hin6I GCGC 3 cut(s) 86, 614, 823
HinP1I GCGC 3 cut(s) 86, 614, 823
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HinfI GANTC 6 cut(s) 4, 259, 932, 1049, 1136, 1184
HpaI GTTAAC 1 cut(s) 585
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 4 cut(s) 455, 484, 585, 1029
Hpy188I TCNGA 8 cut(s) 43, 70, 130, 244, 515, 780, 1171, 1189
Hpy188III TCNNGA 6 cut(s) 215, 263, 296, 739, 929, 974
Hpy8I GTNNAC 4 cut(s) 455, 484, 585, 1029
Hpy99I CGWCG 2 cut(s) 1247, 1250
HpyAV CCTTC 3 cut(s) 212, 293, 1061
HpyCH4III ACNGT 3 cut(s) 481, 757, 997
HpyCH4IV ACGT 3 cut(s) 416, 451, 1023
HpyCH4V TGCA 5 cut(s) 124, 275, 455, 674, 691
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 697, 1092
HpyF3I CTNAG 4 cut(s) 162, 243, 705, 1168
HpySE526I ACGT 3 cut(s) 416, 451, 1023
Hsp92I GRCGYC 1 cut(s) 923
HspAI GCGC 3 cut(s) 86, 614, 823
Ksp22I TGATCA 1 cut(s) 970
KspAI GTTAAC 1 cut(s) 585
Kzo9I GATC 8 cut(s) 111, 130, 287, 649, 735, 970, 1189, 1217
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 2 cut(s) 259, 1025
LweI GCATC 3 cut(s) 869, 884, 1025
MaeI CTAG 2 cut(s) 1092, 1193
MaeII ACGT 3 cut(s) 416, 451, 1023
MaeIII GTNAC 7 cut(s) 171, 193, 201, 401, 676, 869, 997
MalI GATC 8 cut(s) 113, 132, 289, 651, 737, 972, 1191, 1219
MboI GATC 8 cut(s) 111, 130, 287, 649, 735, 970, 1189, 1217
MboII GAAGA 4 cut(s) 29, 67, 448, 608
MflI RGATCY 3 cut(s) 111, 649, 735
MhlI GDGCHC 3 cut(s) 457, 624, 702
MlsI TGGCCA 1 cut(s) 465
MluCI AATT 5 cut(s) 78, 149, 371, 839, 1143
MluNI TGGCCA 1 cut(s) 465
MlyI GAGTC 3 cut(s) 253, 1058, 1145
MnlI CCTC 6 cut(s) 241, 550, 663, 784, 912, 952
Mox20I TGGCCA 1 cut(s) 465
MroXI GAANNNNTTC 1 cut(s) 226
MscI TGGCCA 1 cut(s) 465
MseI TTAA 7 cut(s) 236, 324, 378, 584, 903, 1110, 1146
MslI CAYNNNNRTG 1 cut(s) 972
Msp20I TGGCCA 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 272
MspCI CTTAAG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 891
Mva1269I GAATGC 1 cut(s) 1078
MvaI CCWGG 1 cut(s) 891
MvnI CGCG 1 cut(s) 1086
MwoI GCNNNNNNNGC 3 cut(s) 278, 697, 1092
NdeI CATATG 2 cut(s) 391, 955
NdeII GATC 8 cut(s) 111, 130, 287, 649, 735, 970, 1189, 1217
NlaIV GGNNCC 4 cut(s) 180, 304, 651, 1198
NmuCI GTSAC 3 cut(s) 171, 201, 997
NsbI TGCGCA 1 cut(s) 615
NspI RCATGY 2 cut(s) 914, 1240
PagI TCATGA 2 cut(s) 928, 973
PciI ACATGT 1 cut(s) 910
PctI GAATGC 1 cut(s) 1078
PdmI GAANNNNTTC 1 cut(s) 226
PfeI GAWTC 3 cut(s) 4, 932, 1184
PfoI TCCNGGA 1 cut(s) 889
PkrI GCNGC 3 cut(s) 274, 1015, 1085
PleI GAGTC 3 cut(s) 253, 1057, 1144
PpsI GAGTC 3 cut(s) 253, 1057, 1144
Ppu21I YACGTR 1 cut(s) 417
PscI ACATGT 1 cut(s) 910
Psp6I CCWGG 1 cut(s) 889
PspGI CCWGG 1 cut(s) 889
PspN4I GGNNCC 4 cut(s) 180, 304, 651, 1198
PspPI GGNCC 1 cut(s) 1196
PstNI CAGNNNCTG 3 cut(s) 479, 530, 680
PsuI RGATCY 3 cut(s) 111, 649, 735
RsaI GTAC 4 cut(s) 51, 415, 815, 1241
RsaNI GTAC 4 cut(s) 50, 414, 814, 1240
RseI CAYNNNNRTG 1 cut(s) 972
SaqAI TTAA 7 cut(s) 236, 324, 378, 584, 903, 1110, 1146
SatI GCNGC 3 cut(s) 273, 1014, 1084
Sau3AI GATC 8 cut(s) 111, 130, 287, 649, 735, 970, 1189, 1217
Sau96I GGNCC 1 cut(s) 1196
SchI GAGTC 3 cut(s) 253, 1058, 1145
ScrFI CCNGG 1 cut(s) 891
SduI GDGCHC 3 cut(s) 457, 624, 702
SetI ASST 9 cut(s) 100, 163, 180, 419, 454, 532, 663, 795, 1026
SfaNI GCATC 3 cut(s) 869, 884, 1025
SfcI CTRYAG 2 cut(s) 406, 874
SmiMI CAYNNNNRTG 1 cut(s) 972
SmlI CTYRAG 2 cut(s) 294, 323
SmoI CTYRAG 2 cut(s) 294, 323
SnaBI TACGTA 1 cut(s) 417
Sse9I AATT 5 cut(s) 78, 149, 371, 839, 1143
SsiI CCGC 3 cut(s) 270, 1039, 1084
SspMI CTAG 2 cut(s) 1092, 1193
StyD4I CCNGG 1 cut(s) 889
StyI CCWWGG 1 cut(s) 863
TaaI ACNGT 3 cut(s) 481, 757, 997
TaiI ACGT 3 cut(s) 419, 454, 1026
TaqI TCGA 2 cut(s) 1019, 1216
TaqII GACCGA 1 cut(s) 733
TasI AATT 5 cut(s) 78, 149, 371, 839, 1143
TatI WGTACW 1 cut(s) 49
TauI GCSGC 1 cut(s) 1086
TfiI GAWTC 3 cut(s) 4, 932, 1184
Tru1I TTAA 7 cut(s) 236, 324, 378, 584, 903, 1110, 1146
Tru9I TTAA 7 cut(s) 236, 324, 378, 584, 903, 1110, 1146
TscAI CASTG 3 cut(s) 356, 651, 760
TseFI GTSAC 3 cut(s) 171, 201, 997
TseI GCWGC 2 cut(s) 272, 1013
Tsp45I GTSAC 3 cut(s) 171, 201, 997
TspDTI ATGAA 3 cut(s) 71, 513, 1119
TspGWI ACGGA 2 cut(s) 1141, 1263
TspRI CASTG 3 cut(s) 356, 651, 760
Vha464I CTTAAG 1 cut(s) 323
VneI GTGCAC 1 cut(s) 453
XapI RAATTY 2 cut(s) 78, 371
XceI RCATGY 2 cut(s) 914, 1240
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 226
XspI CTAG 2 cut(s) 1092, 1193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.