Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008001

Physical Location & Seq

Genomic Coordinates Forward (+)

14225694 .. 14227686

Gene Structure 1993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTGTATTGTTTTGAGGGGAGAATCAAGGTCACATGGTTTCGCTAGGGAAAGATGTGTAACGGATGAAGTTGCATCTGATAATGTACCAAAGAAGGAGAATATTGATACTGAAATCCATGTATCGCCACATCAAACTCCTACTAATGGGGTCTGTCCACTGAAATCAGATGATAAAGGAAGCGTTCCATCTAAAGTACCTAATAAAGCATTGCAGGTGCCTGATGGTGGTATTACTGCATTGCAATCAAATCAAGAAGGAAGTGTTTCCTCATTAACATCTGAGAAGGCATCGCTGACCCCTGAGACTGGTGCCCTTGTCTTGCAATCTGGTCATGAAGGAAGCACTTCATCTAGAGTGCGTGAAAGACCGTTAGAGGATGGTTATAACTGGAGAAAATATGGCCAGAAACTTGTGAGGGGAAATATTTATGTACGAAGTTACTACAGATGTACACATCCTAAATGTCCTGTGAAGAGGCAAGTGGAACGCTCCCATAATGGGCAGCTAATAGATACCGTTTACTTTGGTCAGCATGATCATCCTAAACCTCAACTTAGTGTCCCAATAGCTGTTGGTTTTGCTGTGTCCGTTGGTGAAGAAAGAGCAGAACGGCGGTTGTTAACCAGTGGTGGAGATAAACCATTGGAGGCATGTGGCGACACACCTAAACAAACTGAGCCAGTAGATCCCCTTCAGCATTCAAATGTTGCAGAGAATGAAGCTGTGCAGGGAGTTACTACAGATGCTCAAATCCTGGATGCCCTGACTGTCACCCCTAATACTGCAGCATCAAATGTGTTGCCAGCAGCCCACAATGGTGACTCTGGCACCAAAGTAGAAGCACATGCTGTCAGCCGTGCTAGTGTTGCATGTACTAGCCCAGAACATGAAGGTAAACCTATCAAGCAACCCGATTTTGAGTCAAAAACTAAATCACGAAGAATTGATGCTGTTGCCTCTGATATGGTTGTCGATTCTGATCTGGGTCCTGAAAGAAAGATCAATGAAGAATTGATTGGTAAAGCATGTGTCCATGAAGAAGGTGATCCCCATGATACAATTGTTTGTAGAGCAAATAAACTGCAGAATGGCAAGTCAGAAAATATTCCATCAGAGCAAGAAAAGCGAAAGCCAAAAGCAGAACCTGTTCAAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009751 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043565 GO:0045893 GO:0045935 GO:0046677 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

386

Amino Acids

41.78

Weight (kDa)

6.18

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	126 - 182	9.8e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04880 AT2G04880
fragaria_vesca	FvH4_6g41210
malus_domestica	MD09G1121600.v1.1 MD17G1112600.v1.1
prunus_persica	Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1
pyrus_communis	pycom09g04600 pycom17g10430
rosa_chinensis	RchiOBHm_Chr2g0156771
rosa_laevigata	RLG00000020940
rosa_multiflora	Rmu_sc0008149.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092740
rosa_rugosa	Rorug02G0456100 Rorug02G0456100
rosa_samantha	Rh2AG521500 Rh2BG535000 Rh2CG506400 Rh2DG544000
rosa_wichuraiana	Rw2G043060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AarI	CACCTGC	1 cut(s)	205
Acc36I	ACCTGC	1 cut(s)	205
AccB1I	GGYRCC	3 cut(s)	217, 311, 830
AciI	CCGC	1 cut(s)	616
AclWI	GGATC	2 cut(s)	683, 1043
AcoI	YGGCCR	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	5 cut(s)	87, 198, 435, 454, 877
AfiI	CCNNNNNNNGG	5 cut(s)	146, 227, 308, 501, 1154
AgsI	TTSAA	2 cut(s)	705, 1154
AjnI	CCWGG	1 cut(s)	756
AjuI	GAANNNNNNNTTGG	2 cut(s)	1002, 1034
AleI	CACNNNNGTG	1 cut(s)	819
AluBI	AGCT	3 cut(s)	508, 572, 725
AluI	AGCT	3 cut(s)	508, 572, 725
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	2 cut(s)	683, 1043
AlwNI	CAGNNNCTG	1 cut(s)	1148
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	3 cut(s)	505, 788, 809
Asp700I	GAANNNNTTC	4 cut(s)	265, 346, 1107, 1149
AspS9I	GGNCC	1 cut(s)	989
AsuHPI	GGTGA	4 cut(s)	608, 766, 833, 1058
AvaII	GGWCC	1 cut(s)	989
BaeGI	GKGCMC	1 cut(s)	316
BaeI	ACNNNNGTAYC	2 cut(s)	1050, 1083
BalI	TGGCCA	1 cut(s)	405
BanI	GGYRCC	3 cut(s)	217, 311, 830
BarI	GAAGNNNNNNTAC	2 cut(s)	678, 710
BbvI	GCAGC	3 cut(s)	517, 800, 821
BccI	CCATC	4 cut(s)	196, 218, 374, 1120
BceAI	ACGGC	2 cut(s)	629, 843
BciT130I	CCWGG	1 cut(s)	758
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	4 cut(s)	45, 354, 864, 879
BfmI	CTRYAG	4 cut(s)	445, 741, 786, 1085
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	3 cut(s)	506, 789, 810
BlsI	GCNGC	3 cut(s)	507, 790, 811
Bme1390I	CCNGG	1 cut(s)	758
Bme18I	GGWCC	1 cut(s)	989
BmgT120I	GGNCC	1 cut(s)	989
BmiI	GGNNCC	4 cut(s)	219, 313, 832, 990
BmrFI	CCNGG	1 cut(s)	758
BmsI	GCATC	6 cut(s)	83, 299, 736, 751, 800, 940
BpmI	CTGGAG	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	981
Bsc4I	CCNNNNNNNGG	5 cut(s)	146, 227, 308, 501, 1154
Bse1I	ACTGG	4 cut(s)	313, 395, 627, 683
Bse3DI	GCAATG	2 cut(s)	209, 239
Bse8I	GATNNNNATC	1 cut(s)	981
BseBI	CCWGG	1 cut(s)	758
BseGI	GGATG	5 cut(s)	70, 385, 457, 541, 766
BseJI	GATNNNNATC	1 cut(s)	981
BseLI	CCNNNNNNNGG	5 cut(s)	146, 227, 308, 501, 1154
BseMI	GCAATG	2 cut(s)	209, 239
BseMII	CTCAG	3 cut(s)	273, 294, 669
BseNI	ACTGG	4 cut(s)	313, 395, 627, 683
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	3 cut(s)	517, 800, 821
BsgI	GTGCAG	1 cut(s)	749
BshFI	GGCC	1 cut(s)	405
BshNI	GGYRCC	3 cut(s)	217, 311, 830
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	5 cut(s)	146, 227, 308, 501, 1154
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	548
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp1407I	TGTACA	1 cut(s)	452
Bsp143I	GATC	5 cut(s)	538, 688, 982, 1002, 1048
BspACI	CCGC	1 cut(s)	616
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	3 cut(s)	274, 295, 670
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	4 cut(s)	219, 313, 832, 990
BspMAI	CTGCAG	2 cut(s)	790, 1089
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	2 cut(s)	683, 1043
BspT107I	GGYRCC	3 cut(s)	217, 311, 830
BsrDI	GCAATG	2 cut(s)	209, 239
BsrGI	TGTACA	1 cut(s)	452
BsrI	ACTGG	4 cut(s)	313, 395, 627, 683
BssMI	GATC	5 cut(s)	538, 688, 982, 1002, 1048
Bst2UI	CCWGG	1 cut(s)	758
Bst4CI	ACNGT	3 cut(s)	372, 520, 772
Bst6I	CTCTTC	1 cut(s)	470
BstAUI	TGTACA	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	807
BstDEI	CTNAG	4 cut(s)	282, 303, 557, 678
BstENI	CCTNNNNNAGG	1 cut(s)	1152
BstF5I	GGATG	5 cut(s)	70, 385, 457, 541, 766
BstKTI	GATC	5 cut(s)	541, 691, 985, 1005, 1051
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	5 cut(s)	538, 688, 982, 1002, 1048
BstMWI	GCNNNNNNNGC	2 cut(s)	869, 1126
BstNI	CCWGG	1 cut(s)	758
BstNSI	RCATGY	4 cut(s)	657, 851, 876, 1032
BstSCI	CCNGG	1 cut(s)	756
BstSFI	CTRYAG	4 cut(s)	445, 741, 786, 1085
BstSLI	GKGCMC	1 cut(s)	316
BstV1I	GCAGC	3 cut(s)	517, 800, 821
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
BsuRI	GGCC	1 cut(s)	405
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	5 cut(s)	70, 385, 457, 541, 766
BtsIMutI	CAGTG	2 cut(s)	158, 634
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	807
CaiI	CAGNNNCTG	1 cut(s)	1148
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	989
Csp6I	GTAC	5 cut(s)	86, 197, 434, 453, 876
CviJI	RGCY	9 cut(s)	405, 508, 572, 682, 725, 812, 858, 882, 1135
CviKI_1	RGCY	9 cut(s)	405, 508, 572, 682, 725, 812, 858, 882, 1135
CviQI	GTAC	5 cut(s)	86, 197, 434, 453, 876
DdeI	CTNAG	4 cut(s)	282, 303, 557, 678
DpnI	GATC	5 cut(s)	540, 690, 984, 1004, 1050
DpnII	GATC	5 cut(s)	538, 688, 982, 1002, 1048
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	989
Eco57I	CTGAAG	1 cut(s)	680
EcoNI	CCTNNNNNAGG	1 cut(s)	1152
EcoO109I	RGGNCCY	1 cut(s)	989
EcoRII	CCWGG	1 cut(s)	756
FaqI	GGGAC	1 cut(s)	548
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	3 cut(s)	506, 789, 810
FokI	GGATG	5 cut(s)	77, 392, 444, 528, 773
Fsp4HI	GCNGC	3 cut(s)	506, 789, 810
FspBI	CTAG	4 cut(s)	45, 354, 864, 879
GluI	GCNGC	3 cut(s)	506, 789, 810
GsuI	CTGGAG	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	405
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HinfI	GANTC	4 cut(s)	23, 824, 923, 977
HpaI	GTTAAC	1 cut(s)	624
HphI	GGTGA	4 cut(s)	608, 766, 833, 1058
Hpy166II	GTNNAC	5 cut(s)	158, 455, 523, 624, 899
Hpy188I	TCNGA	7 cut(s)	79, 169, 283, 964, 982, 1102, 1117
Hpy188III	TCNNGA	5 cut(s)	254, 335, 354, 939, 992
Hpy8I	GTNNAC	5 cut(s)	158, 455, 523, 624, 899
HpyAV	CCTTC	7 cut(s)	88, 251, 280, 332, 704, 887, 1037
HpyCH4III	ACNGT	3 cut(s)	372, 520, 772
HpyF10VI	GCNNNNNNNGC	2 cut(s)	869, 1126
HpyF3I	CTNAG	4 cut(s)	282, 303, 557, 678
Ksp22I	TGATCA	1 cut(s)	538
KspAI	GTTAAC	1 cut(s)	624
Kzo9I	GATC	5 cut(s)	538, 688, 982, 1002, 1048
LmnI	GCTCC	1 cut(s)	497
Lsp1109I	GCAGC	3 cut(s)	517, 800, 821
LweI	GCATC	6 cut(s)	83, 299, 736, 751, 800, 940
MaeI	CTAG	4 cut(s)	45, 354, 864, 879
MaeIII	GTNAC	6 cut(s)	30, 58, 440, 736, 772, 821
MalI	GATC	5 cut(s)	540, 690, 984, 1004, 1050
MboI	GATC	5 cut(s)	538, 688, 982, 1002, 1048
MboII	GAAGA	5 cut(s)	487, 611, 954, 1022, 1052
MfeI	CAATTG	1 cut(s)	1062
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	1 cut(s)	316
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	3 cut(s)	945, 1013, 1062
MluNI	TGGCCA	1 cut(s)	405
MlyI	GAGTC	2 cut(s)	818, 932
MnlI	CCTC	8 cut(s)	9, 280, 370, 411, 471, 561, 643, 970
Mox20I	TGGCCA	1 cut(s)	405
MroXI	GAANNNNTTC	4 cut(s)	265, 346, 1107, 1149
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	3 cut(s)	275, 623, 1159
MslI	CAYNNNNRTG	2 cut(s)	705, 819
Msp20I	TGGCCA	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	758
MunI	CAATTG	1 cut(s)	1062
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	1 cut(s)	758
MwoI	GCNNNNNNNGC	2 cut(s)	869, 1126
NdeII	GATC	5 cut(s)	538, 688, 982, 1002, 1048
NlaIV	GGNNCC	4 cut(s)	219, 313, 832, 990
NmuCI	GTSAC	3 cut(s)	30, 772, 821
NspI	RCATGY	4 cut(s)	657, 851, 876, 1032
OliI	CACNNNNGTG	1 cut(s)	819
PagI	TCATGA	1 cut(s)	334
PaqCI	CACCTGC	1 cut(s)	205
PctI	GAATGC	1 cut(s)	700
PdmI	GAANNNNTTC	4 cut(s)	265, 346, 1107, 1149
PfeI	GAWTC	2 cut(s)	23, 977
PfoI	TCCNGGA	1 cut(s)	756
PkrI	GCNGC	3 cut(s)	507, 790, 811
PleI	GAGTC	2 cut(s)	818, 931
PpsI	GAGTC	2 cut(s)	818, 931
PpuMI	RGGWCCY	1 cut(s)	989
PsiI	TTATAA	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	989
Psp6I	CCWGG	1 cut(s)	756
PspGI	CCWGG	1 cut(s)	756
PspN4I	GGNNCC	4 cut(s)	219, 313, 832, 990
PspPI	GGNCC	1 cut(s)	989
PspPPI	RGGWCCY	1 cut(s)	989
PstI	CTGCAG	2 cut(s)	790, 1089
PstNI	CAGNNNCTG	1 cut(s)	1148
PsuI	RGATCY	1 cut(s)	688
RsaI	GTAC	5 cut(s)	87, 198, 435, 454, 877
RsaNI	GTAC	5 cut(s)	86, 197, 434, 453, 876
RseI	CAYNNNNRTG	2 cut(s)	705, 819
SaqAI	TTAA	3 cut(s)	275, 623, 1159
SatI	GCNGC	3 cut(s)	506, 789, 810
Sau3AI	GATC	5 cut(s)	538, 688, 982, 1002, 1048
Sau96I	GGNCC	1 cut(s)	989
SchI	GAGTC	2 cut(s)	818, 932
ScrFI	CCNGG	1 cut(s)	758
SduI	GDGCHC	1 cut(s)	316
SfaNI	GCATC	6 cut(s)	83, 299, 736, 751, 800, 940
SfcI	CTRYAG	4 cut(s)	445, 741, 786, 1085
SinI	GGWCC	1 cut(s)	989
SmiMI	CAYNNNNRTG	2 cut(s)	705, 819
Sse9I	AATT	3 cut(s)	945, 1013, 1062
SsiI	CCGC	1 cut(s)	616
SspI	AATATT	3 cut(s)	103, 427, 1108
SspMI	CTAG	4 cut(s)	45, 354, 864, 879
StyD4I	CCNGG	1 cut(s)	756
TaaI	ACNGT	3 cut(s)	372, 520, 772
TaqI	TCGA	1 cut(s)	975
TasI	AATT	3 cut(s)	945, 1013, 1062
TatI	WGTACW	2 cut(s)	452, 875
TfiI	GAWTC	2 cut(s)	23, 977
Tru1I	TTAA	3 cut(s)	275, 623, 1159
Tru9I	TTAA	3 cut(s)	275, 623, 1159
TscAI	CASTG	2 cut(s)	165, 634
TseFI	GTSAC	3 cut(s)	30, 772, 821
TseI	GCWGC	3 cut(s)	505, 788, 809
Tsp45I	GTSAC	3 cut(s)	30, 772, 821
TspDTI	ATGAA	7 cut(s)	81, 339, 351, 735, 906, 1023, 1053
TspGWI	ACGGA	2 cut(s)	77, 580
TspRI	CASTG	2 cut(s)	165, 634
VpaK11BI	GGWCC	1 cut(s)	989
XagI	CCTNNNNNAGG	1 cut(s)	1152
XbaI	TCTAGA	1 cut(s)	353
XceI	RCATGY	4 cut(s)	657, 851, 876, 1032
XmnI	GAANNNNTTC	4 cut(s)	265, 346, 1107, 1149
XspI	CTAG	4 cut(s)	45, 354, 864, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.