Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008001

Physical Location & Seq

Genomic Coordinates Reverse (-)

77327776 .. 77334401

Gene Structure 6626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG544000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGTTTCGCTAGGGAAAGATGTAACGGATGAAGTTGCATCTGATAATGTACCGAAGAAGGAGAATATTGATACTGAAATCCATGTATCGCCACATCAAACTCCTACTAATGGGGTCTGTCCACTGAAATCAGATGATAAAGGAAGCGCTCCATCTAAAGTACCTAATAAAGCATTGCAGGTGCCTGATGGTGGTATTACTGCATTGCAATCAAATCAAGAAGGAAGTGTTTCCTCATTAACATCTGAGAAGGCATTGCTGACCCCTGAGACTGGTGCCCTTGTCTTGCAATCTGGTCATGAAGGAAGCACTTCATCTAGAGTGCGTGAAAGACCGTTAGAGGATGGTTATAACTGGAGAAAATATGGCCAAAAACTTGTTAGGGGAAATATTTATGTACGAAGTTACTACAGATGTACACATCCTAAATGTCCTGTGAAGAGGCAAGTGGAACGCTCCCATAATGGGCAGTTAATAGATACCGTTTACTTTGGTCAGCATGATCATCCTAAACCTCAACTAAGTGTCCCAATAGCTGTTGGTTTTGCTGTGTCCGTTGGTGAAGAAAGAGCAGAACAGCGGTTGTTAACCAGTGGTGAAGATAAACCATTGGAGGCACATGGTGACACACCTAAACAAACTGAGCCAGTAGATCCCCTTCAGCATTCAAATGTTGCAGAGAATGAAGCTGTGCAGGGTGTGCTCTCTTTATCTAATAGAACTAGAGATGGTGATCCAGACCCAAAAAGACAGTATGTTAATGCTGCATTTTCTCTCTCTCTCTATATATATATATATATATATTTTTTTTTTTTCATACACGATATTCTGGTCACCTCACCTTTTTTTATTGCCCTTGGCCAAAAAAAAAAAAACAGGAAGAAGGAAAAACATAATGGAAACTCCATTCCGGTGGATAAGCCAACTGGTGAACCACGTGTTGTTGTTCAGACTATGAGTGAGGTTGATATAGTCAATGATGGGTACAGATGGCGCAAATATGGGCAAAAATTGGTAAAAGGCAATCCGAATCCCAGGTATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009751 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043565 GO:0045893 GO:0045935 GO:0046677 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

348

Amino Acids

38.79

Weight (kDa)

8.86

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	114 - 170	8.3e-24	WRKY DNA -binding domain
WRKY	PF03106	326 - 347	1.1e-06	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04880 AT2G04880
fragaria_vesca	FvH4_6g41210
malus_domestica	MD09G1121600.v1.1 MD17G1112600.v1.1
prunus_persica	Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1
pyrus_communis	pycom09g04600 pycom17g10430
rosa_chinensis	RchiOBHm_Chr2g0156771
rosa_laevigata	RLG00000020940
rosa_multiflora	Rmu_sc0008149.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092740
rosa_rugosa	Rorug02G0456100 Rorug02G0456100
rosa_samantha	Rh2AG521500 Rh2BG535000 Rh2CG506400 Rh2DG544000
rosa_wichuraiana	Rw2G043060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
AarI	CACCTGC	1 cut(s)	169
Acc36I	ACCTGC	1 cut(s)	169
AccB1I	GGYRCC	2 cut(s)	181, 275
AciI	CCGC	1 cut(s)	580
AclWI	GGATC	2 cut(s)	647, 728
AcoI	YGGCCR	2 cut(s)	367, 859
AcuI	CTGAAG	1 cut(s)	644
AcvI	CACGTG	1 cut(s)	938
AdeI	CACNNNGTG	1 cut(s)	623
AfaI	GTAC	5 cut(s)	51, 162, 399, 418, 986
AfeI	AGCGCT	1 cut(s)	148
AfiI	CCNNNNNNNGG	4 cut(s)	110, 191, 272, 465
AflIII	ACRYGT	1 cut(s)	937
AgsI	TTSAA	1 cut(s)	669
AjnI	CCWGG	1 cut(s)	1034
AluBI	AGCT	2 cut(s)	536, 689
AluI	AGCT	2 cut(s)	536, 689
Alw21I	GWGCWC	1 cut(s)	705
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	2 cut(s)	647, 728
Aor51HI	AGCGCT	1 cut(s)	148
AoxI	GGCC	2 cut(s)	367, 859
ApeKI	GCWGC	1 cut(s)	764
Asp700I	GAANNNNTTC	2 cut(s)	229, 310
AspLEI	GCGC	2 cut(s)	149, 996
AsuHPI	GGTGA	7 cut(s)	572, 608, 635, 743, 826, 831, 941
BaeGI	GKGCMC	1 cut(s)	280
BalI	TGGCCA	2 cut(s)	369, 861
BanI	GGYRCC	2 cut(s)	181, 275
BarI	GAAGNNNNNNTAC	2 cut(s)	642, 674
BbrPI	CACGTG	1 cut(s)	938
Bbv12I	GWGCWC	1 cut(s)	705
BbvI	GCAGC	1 cut(s)	751
BccI	CCATC	6 cut(s)	160, 182, 338, 722, 974, 984
BciT130I	CCWGG	1 cut(s)	1036
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	3 cut(s)	11, 318, 723
BfmI	CTRYAG	1 cut(s)	409
BfoI	RGCGCY	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	765
BlsI	GCNGC	1 cut(s)	766
Bme1390I	CCNGG	1 cut(s)	1036
BmiI	GGNNCC	2 cut(s)	183, 277
BmrFI	CCNGG	1 cut(s)	1036
BmsI	GCATC	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	376
BsaAI	YACGTR	1 cut(s)	938
BsaBI	GATNNNNATC	1 cut(s)	732
BsaJI	CCNNGG	2 cut(s)	856, 1034
BsaWI	WCCGGW	1 cut(s)	910
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 191, 272, 465
Bse1I	ACTGG	5 cut(s)	277, 359, 591, 647, 931
Bse3DI	GCAATG	3 cut(s)	173, 203, 254
Bse8I	GATNNNNATC	1 cut(s)	732
BseBI	CCWGG	1 cut(s)	1036
BseDI	CCNNGG	2 cut(s)	856, 1034
BseGI	GGATG	4 cut(s)	34, 349, 421, 505
BseJI	GATNNNNATC	1 cut(s)	732
BseLI	CCNNNNNNNGG	4 cut(s)	110, 191, 272, 465
BseMI	GCAATG	3 cut(s)	173, 203, 254
BseMII	CTCAG	3 cut(s)	237, 258, 633
BseNI	ACTGG	5 cut(s)	277, 359, 591, 647, 931
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	1 cut(s)	751
BsgI	GTGCAG	1 cut(s)	713
BshFI	GGCC	2 cut(s)	369, 861
BshNI	GGYRCC	2 cut(s)	181, 275
BsiHKAI	GWGCWC	1 cut(s)	705
BsiSI	CCGG	1 cut(s)	911
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	4 cut(s)	110, 191, 272, 465
BsmAI	GTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	2 cut(s)	369, 861
Bsp1286I	GDGCHC	2 cut(s)	280, 705
Bsp1407I	TGTACA	1 cut(s)	416
Bsp143I	GATC	3 cut(s)	502, 652, 733
BspACI	CCGC	1 cut(s)	580
BspANI	GGCC	2 cut(s)	369, 861
BspCNI	CTCAG	3 cut(s)	238, 259, 634
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	183, 277
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	2 cut(s)	647, 728
BspT107I	GGYRCC	2 cut(s)	181, 275
BsrDI	GCAATG	3 cut(s)	173, 203, 254
BsrGI	TGTACA	1 cut(s)	416
BsrI	ACTGG	5 cut(s)	277, 359, 591, 647, 931
BssECI	CCNNGG	2 cut(s)	856, 1034
BssMI	GATC	3 cut(s)	502, 652, 733
BssT1I	CCWWGG	1 cut(s)	856
Bst2UI	CCWGG	1 cut(s)	1036
Bst4CI	ACNGT	3 cut(s)	336, 484, 753
Bst6I	CTCTTC	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	700
BstAUI	TGTACA	1 cut(s)	416
BstBAI	YACGTR	1 cut(s)	938
BstDEI	CTNAG	4 cut(s)	246, 267, 521, 642
BstEII	GGTNACC	1 cut(s)	832
BstF5I	GGATG	4 cut(s)	34, 349, 421, 505
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	2 cut(s)	149, 996
BstKTI	GATC	3 cut(s)	505, 655, 736
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	3 cut(s)	502, 652, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	700
BstNI	CCWGG	1 cut(s)	1036
BstPI	GGTNACC	1 cut(s)	832
BstSCI	CCNGG	1 cut(s)	1034
BstSFI	CTRYAG	1 cut(s)	409
BstSLI	GKGCMC	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	751
BstX2I	RGATCY	1 cut(s)	652
BstXI	CCANNNNNNTGG	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	2 cut(s)	369, 861
BtsCI	GGATG	4 cut(s)	34, 349, 421, 505
BtsIMutI	CAGTG	2 cut(s)	122, 598
BveI	ACCTGC	1 cut(s)	169
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	2 cut(s)	149, 996
Csp6I	GTAC	5 cut(s)	50, 161, 398, 417, 985
CviAII	CATG	4 cut(s)	83, 299, 500, 620
CviJI	RGCY	6 cut(s)	369, 536, 646, 689, 861, 922
CviKI_1	RGCY	6 cut(s)	369, 536, 646, 689, 861, 922
CviQI	GTAC	5 cut(s)	50, 161, 398, 417, 985
DdeI	CTNAG	4 cut(s)	246, 267, 521, 642
DpnI	GATC	3 cut(s)	504, 654, 735
DpnII	GATC	3 cut(s)	502, 652, 733
DraIII	CACNNNGTG	1 cut(s)	623
EaeI	YGGCCR	2 cut(s)	367, 859
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	856
Eco47III	AGCGCT	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	644
Eco72I	CACGTG	1 cut(s)	938
Eco91I	GGTNACC	1 cut(s)	832
EcoO65I	GGTNACC	1 cut(s)	832
EcoRII	CCWGG	1 cut(s)	1034
EcoT14I	CCWWGG	1 cut(s)	856
ErhI	CCWWGG	1 cut(s)	856
FaeI	CATG	4 cut(s)	86, 302, 503, 623
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	4 cut(s)	82, 298, 499, 619
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	1 cut(s)	765
FokI	GGATG	4 cut(s)	41, 356, 408, 492
Fsp4HI	GCNGC	1 cut(s)	765
FspBI	CTAG	3 cut(s)	11, 318, 723
GlaI	GCGC	2 cut(s)	148, 995
GluI	GCNGC	1 cut(s)	765
GsuI	CTGGAG	1 cut(s)	376
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	369, 861
HapII	CCGG	1 cut(s)	911
HhaI	GCGC	2 cut(s)	149, 996
Hin1II	CATG	4 cut(s)	86, 302, 503, 623
Hin6I	GCGC	2 cut(s)	147, 994
HinP1I	GCGC	2 cut(s)	147, 994
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HinfI	GANTC	1 cut(s)	1030
HpaI	GTTAAC	1 cut(s)	588
HpaII	CCGG	1 cut(s)	911
HphI	GGTGA	7 cut(s)	572, 608, 635, 743, 826, 831, 941
Hpy166II	GTNNAC	5 cut(s)	122, 419, 487, 588, 932
Hpy188I	TCNGA	5 cut(s)	43, 133, 247, 951, 1029
Hpy188III	TCNNGA	4 cut(s)	218, 299, 318, 737
Hpy8I	GTNNAC	5 cut(s)	122, 419, 487, 588, 932
HpyAV	CCTTC	6 cut(s)	52, 215, 244, 296, 668, 877
HpyCH4III	ACNGT	3 cut(s)	336, 484, 753
HpyCH4IV	ACGT	1 cut(s)	937
HpyCH4V	TGCA	8 cut(s)	38, 178, 203, 208, 289, 677, 694, 767
HpyF10VI	GCNNNNNNNGC	1 cut(s)	700
HpyF3I	CTNAG	4 cut(s)	246, 267, 521, 642
HpySE526I	ACGT	1 cut(s)	937
Hsp92II	CATG	4 cut(s)	86, 302, 503, 623
HspAI	GCGC	2 cut(s)	147, 994
Ksp22I	TGATCA	1 cut(s)	502
KspAI	GTTAAC	1 cut(s)	588
Kzo9I	GATC	3 cut(s)	502, 652, 733
LmnI	GCTCC	2 cut(s)	154, 461
Lsp1109I	GCAGC	1 cut(s)	751
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	3 cut(s)	11, 318, 723
MaeII	ACGT	1 cut(s)	937
MaeIII	GTNAC	4 cut(s)	22, 404, 623, 832
MalI	GATC	3 cut(s)	504, 654, 735
MboI	GATC	3 cut(s)	502, 652, 733
MboII	GAAGA	5 cut(s)	67, 451, 575, 611, 892
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	2 cut(s)	280, 705
MlsI	TGGCCA	2 cut(s)	369, 861
MluCI	AATT	1 cut(s)	1010
MluNI	TGGCCA	2 cut(s)	369, 861
MnlI	CCTC	7 cut(s)	244, 334, 435, 525, 607, 847, 955
Mox20I	TGGCCA	2 cut(s)	369, 861
MroXI	GAANNNNTTC	2 cut(s)	229, 310
MscI	TGGCCA	2 cut(s)	369, 861
MseI	TTAA	4 cut(s)	239, 473, 587, 759
MslI	CAYNNNNRTG	2 cut(s)	669, 911
Msp20I	TGGCCA	2 cut(s)	369, 861
MspA1I	CMGCKG	1 cut(s)	580
MspI	CCGG	1 cut(s)	911
MspR9I	CCNGG	1 cut(s)	1036
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	1 cut(s)	1036
MwoI	GCNNNNNNNGC	1 cut(s)	700
NdeII	GATC	3 cut(s)	502, 652, 733
NlaIII	CATG	4 cut(s)	86, 302, 503, 623
NlaIV	GGNNCC	2 cut(s)	183, 277
NmuCI	GTSAC	2 cut(s)	623, 832
PagI	TCATGA	1 cut(s)	298
PaqCI	CACCTGC	1 cut(s)	169
PctI	GAATGC	1 cut(s)	664
PdmI	GAANNNNTTC	2 cut(s)	229, 310
PfeI	GAWTC	1 cut(s)	1030
PkrI	GCNGC	1 cut(s)	766
PmaCI	CACGTG	1 cut(s)	938
PmlI	CACGTG	1 cut(s)	938
Ppu21I	YACGTR	1 cut(s)	938
PsiI	TTATAA	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	1034
PspCI	CACGTG	1 cut(s)	938
PspEI	GGTNACC	1 cut(s)	832
PspGI	CCWGG	1 cut(s)	1034
PspN4I	GGNNCC	2 cut(s)	183, 277
PsuI	RGATCY	1 cut(s)	652
RsaI	GTAC	5 cut(s)	51, 162, 399, 418, 986
RsaNI	GTAC	5 cut(s)	50, 161, 398, 417, 985
RseI	CAYNNNNRTG	2 cut(s)	669, 911
SaqAI	TTAA	4 cut(s)	239, 473, 587, 759
SatI	GCNGC	1 cut(s)	765
Sau3AI	GATC	3 cut(s)	502, 652, 733
ScrFI	CCNGG	1 cut(s)	1036
SduI	GDGCHC	2 cut(s)	280, 705
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	1 cut(s)	409
SmiMI	CAYNNNNRTG	2 cut(s)	669, 911
Sse9I	AATT	1 cut(s)	1010
SsiI	CCGC	1 cut(s)	580
SspI	AATATT	2 cut(s)	67, 391
SspMI	CTAG	3 cut(s)	11, 318, 723
StyD4I	CCNGG	1 cut(s)	1034
StyI	CCWWGG	1 cut(s)	856
TaaI	ACNGT	3 cut(s)	336, 484, 753
TaiI	ACGT	1 cut(s)	940
TasI	AATT	1 cut(s)	1010
TatI	WGTACW	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	1030
Tru1I	TTAA	4 cut(s)	239, 473, 587, 759
Tru9I	TTAA	4 cut(s)	239, 473, 587, 759
TscAI	CASTG	2 cut(s)	129, 598
TseFI	GTSAC	2 cut(s)	623, 832
TseI	GCWGC	1 cut(s)	764
Tsp45I	GTSAC	2 cut(s)	623, 832
TspDTI	ATGAA	5 cut(s)	45, 303, 315, 699, 805
TspGWI	ACGGA	2 cut(s)	41, 544
TspRI	CASTG	2 cut(s)	129, 598
XbaI	TCTAGA	1 cut(s)	317
XmnI	GAANNNNTTC	2 cut(s)	229, 310
XspI	CTAG	3 cut(s)	11, 318, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.